Clone Sequence Records
BS06404.3prime Sequence
895 bp (798 high quality bases) assembled on 2005-12-03
> BS06404.3prime
ATGGTCTAGAAAGCTTTTAATAGCCGGGTATGATGCGACCCCTCTTGCTG
GCCGTCTTTAGTTTCCGGTTCTTCTTGTCCTTGCTGCGCTTCTCCAGGTT
CTCCTGTCGCTTCTTTTGCCTCTTTTCCTTGTCGTGCTCCACCTTCTGCT
TGCGTTCAGTCCACTTGGTCTTGGACTTCTTCTTCTCCACGCGCCGCTTC
TTGATGGCCTTTTGCAGCAGCTTGGTGTCGTCCTTGACCTTCTTGCCCTC
GACCTTGTCGAATGCGTTGCGCCAGGCGATGTCCGTCTGGATCTCCGCCG
CCTTGTCCGTTTCGCCCTGTTCGCGCAGTTCGGTTAGGTGCTTCTTGGTG
TCGCGCAGCTTCTTCAGAATCTCCTTGGGGTTTTGGTGAGACTTCTTGGC
TTTGCCTCCAGGATTGGCGGCAAAGTCCACCTTGGAGTAGACGATCTTGG
CCTCCTGGTTGTAAACCGGTTGCACCTTGACCGGCTGGATCTGTTCCTTG
CTGTCCTCCGTCTCCTGTTCTGATTTCACCACGCCATTCTTCAGTTTCTG
GTGCTTGACGTTCTCGTTTTTGAGGTTTTTGGCCGAGGAGAGGAGCAGTT
TCTGGACGCCCTTGCTGCGTTTAAGCTTTTTAGATTCGCGTCGCTTCTGC
TGTCGCTCCGTTGTGGGTCCCTTTTTCTGGCGCAGCTTGTTCTTGATGGA
GGCAATGCGTGCCTCTACATCCTCGTCGTCGGAGTCTTGGTTTTTCAGTT
TTCCCTGTTGTTTCTTTTTCTTGTTTCCCGATTCCTCCGTGTCCGACAGC
AGGTACTCTTCGTAGGTCTCCTCATCTTCTTGTTTGGAGTAGGGCACTTT
GTGAATGGTCAGCAGTTCCAAGACTCGCTGATAGAACTTTTTGGT
BS06404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4510-PA | 975 | Surf6-RA | 97..975 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 177..1055 | 895..17 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903760..19904570 | 17..827 | 4055 | 100 | Plus |
| 3R | 32079331 | 3R | 19904619..19904692 | 822..895 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:56:36 has no hits.
BS06404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:52 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-PA | 97..975 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:38 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-PA | 97..975 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:40 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 176..1066 | 7..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:00 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 177..1067 | 7..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:00 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903748..19904568 | 7..825 | 99 | <- | Plus |
| 3R | 19904623..19904692 | 826..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:40 Download gff for
BS06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729470..15730290 | 7..825 | 99 | <- | Plus |
| arm_3R | 15730345..15730414 | 826..895 | 100 | | Plus |
BS06404.5prime Sequence
886 bp (764 high quality bases) assembled on 2005-12-03
> BS06404.5prime
GAAGTTATCAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGG
AGGAGTATGAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGAC
CTGCCCGCCATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGAC
CATTCACAAAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAG
AGTACCTGCTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAA
CAGGGAAAACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACG
CATTGCCTCCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGG
AGCGACAGCAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGC
GTCCAGAAACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGT
CAAGCACCAGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGG
AGGACAGCAAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAAC
CAGGAGGCCAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGG
AGGCAAAGCCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGC
TGCGCGACACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACG
GACAAGGCGGCGGAGATCCAGACGGACATCGCCTGGCGCAACGCATTCGA
CAAGGTCGAGGGCAAGAAGGTCAAGGACGACACCAAGCTGCTGCAAAAGG
CCATCAAGAAGCGGCGCGTGGAGAAGAAGAAGTCCAAGACCAAGTGGACT
GAACGCAAGCAGAAGGTGGAGCACGACAAGGAAAGA
BS06404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4510-PA | 975 | Surf6-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..948 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903867..19904570 | 884..181 | 3520 | 100 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 186..17 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:38:54 has no hits.
BS06404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:53 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:40 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-PA | 1..868 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:42 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..947 | 8..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:31 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 73..948 | 8..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:31 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903865..19904568 | 183..885 | 99 | <- | Minus |
| 3R | 19904623..19904796 | 8..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:42 Download gff for
BS06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729587..15730290 | 183..885 | 99 | <- | Minus |
| arm_3R | 15730345..15730518 | 8..182 | 97 | | Minus |
BS06404.complete Sequence
1007 bp (1007 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635477
> BS06404.complete
GAAGTTATCAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGG
AGGAGTATGAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGAC
CTGCCCGCCATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGAC
CATTCACAAAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAG
AGTACCTGCTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAA
CAGGGAAAACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACG
CATTGCCTCCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGG
AGCGACAGCAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGC
GTCCAGAAACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGT
CAAGCACCAGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGG
AGGACAGCAAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAAC
CAGGAGGCCAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGG
AGGCAAAGCCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGC
TGCGCGACACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACG
GACAAGGCGGCGGAGATCCAGACGGACATCGCCTGGCGCAACGCATTCGA
CAAGGTCGAGGGCAAGAAGGTCAAGGACGACACCAAGCTGCTGCAAAAGG
CCATCAAGAAGCGGCGCGTGGAGAAGAAGAAGTCCAAGACCAAGTGGACT
GAACGCAAGCAGAAGGTGGAGCACGACAAGGAAAAGAGGCAAAAGAAGCG
ACAGGAGAACCTGGAGAAGCGCAGCAAGGACAAGAAGAACCGGAAACTAA
AGACGGCCAGCAAGAGGGGTCGCATCATACCCGGCTATTAAAAGCTTTCT
AGACCAT
BS06404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 975 | CG4510-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..1055 | 17..991 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903760..19904570 | 991..181 | 4055 | 100 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 186..17 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:21:47 has no hits.
BS06404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:39 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:04 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..1066 | 8..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:59 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 80..1052 | 17..989 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:39 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..1066 | 8..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:54 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 81..1053 | 17..989 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:54 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903762..19904568 | 183..989 | 100 | <- | Minus |
| 3R | 19904623..19904788 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:59 Download gff for
BS06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729484..15730290 | 183..989 | 100 | <- | Minus |
| arm_3R | 15730345..15730510 | 17..182 | 100 | | Minus |
BS06404.pep Sequence
Translation from 16 to 990
> BS06404.pep
MTQAEIVKCLREEYEIEHNKDQKPEKEDLPAITKKFYQRVLELLTIHKVP
YSKQEDEETYEEYLLSDTEESGNKKKKQQGKLKNQDSDDEDVEARIASIK
NKLRQKKGPTTERQQKRRESKKLKRSKGVQKLLLSSAKNLKNENVKHQKL
KNGVVKSEQETEDSKEQIQPVKVQPVYNQEAKIVYSKVDFAANPGGKAKK
SHQNPKEILKKLRDTKKHLTELREQGETDKAAEIQTDIAWRNAFDKVEGK
KVKDDTKLLQKAIKKRRVEKKKSKTKWTERKQKVEHDKEKRQKKRQENLE
KRSKDKKNRKLKTASKRGRIIPGY*
BS06404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-PA | 324 | CG4510-PA | 1..324 | 1..324 | 1649 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1374..1659 | 7..321 | 182 | 23.5 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1374..1659 | 7..321 | 182 | 23.5 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1328..1619 | 12..316 | 168 | 21.3 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1328..1619 | 12..316 | 168 | 21.3 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1323..1570 | 56..316 | 159 | 23.8 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1323..1570 | 56..316 | 159 | 23.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 446..747 | 11..312 | 154 | 15.6 | Plus |
| eIF5B-PD | 1090 | CG10840-PD | 74..376 | 21..317 | 154 | 21.1 | Plus |
