Clone BS06407 Report

Search the DGRC for BS06407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptRab2-RA
Protein status:BS06407.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06407.3prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06407.3prime
ATGGTCTAGAAAGCTTCTAGCAGCAGCCACTGTTTGCTGCTCCAGCTGCT
CCTCCGGCTCCTGGGAGCGACGGGTTTGTGGGGGAGTGCTGTTGGCCGAT
CTTAATGCCGTTTGCCTCATTGTTGATGTCGAAGACACCTTCCTGGATCT
TCTCGTAAATCTCTTTGGCCGTATTTATGAACGCCTCCTCTACGTTGGCA
GCTGTGCGCGCAGAAGTCTCCATGAAGACCAGTCCGTGCTCGCGGGCGAA
GGCCTCGCCCTCCTCTTTCTTCACCTCACGCCGCGAATCCAAATCGCTCT
TGTTGCCTATCAGCATAATGACCATGTTCGAGTTCGAGTGCTGACGCGCA
TCCTCCAGCCAGGTGGTCAGGTGGTTGAAGGTCTCCCGTCGCGTGATGTC
GTACACCAGCAAGGCGCCAGCAGCTCCGCGGTAATAAGAGCGTGTGATAG
ATCTGAAAGCCTCCTGCCCAGCCGTGTCCCAGATTTGAAGCTTGATCTGC
TTGCCGTCGATGGTGATCATGCGTGCTCCGAACTCCACGCCAATGGTCAG
GTCGTGCACCGGCTGGAATCGCTTGTCCGTGAACTGGAGCAGCAGACAGG
ACTTGCCCACGCCTGTGTCTCCGATAATGATGTATTTGAACAAGTACGCG
TAGGACATGTCGACTGATAACT

BS06407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3269-PA 642 Rab2-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rab2-RB 1087 CG3269-RB 144..787 660..17 3220 100 Minus
Rab2-RA 1712 CG3269-RA 144..787 660..17 3220 100 Minus
Rab14-RD 878 CG4212-RD 105..343 637..399 310 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6698047..6698386 454..115 1700 100 Minus
2R 25286936 2R 6697413..6697575 615..453 815 100 Minus
2R 25286936 2R 6698444..6698544 117..17 505 100 Minus
2R 25286936 2R 6696882..6696940 660..602 250 94.9 Minus
2L 23513712 2L 14357540..14357688 547..399 250 77.9 Minus
2L 23513712 2L 14357385..14357450 637..572 180 84.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:31:33 has no hits.

BS06407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:59 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:46 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3269-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:33 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 144..790 14..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:43 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 144..790 14..660 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:43 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6696882..6696929 613..660 100 -> Minus
2R 6697416..6697575 453..612 100 -> Minus
2R 6698049..6698385 116..452 100 -> Minus
2R 6698446..6698547 14..115 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:33 Download gff for BS06407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2584387..2584434 613..660 100 -> Minus
arm_2R 2584921..2585080 453..612 100 -> Minus
arm_2R 2585554..2585890 116..452 100 -> Minus
arm_2R 2585951..2586052 14..115 99   Minus

BS06407.5prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06407.5prime
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCTAGAAGCTTTCTAGACC

BS06407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3269-PA 642 Rab2-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab2-RB 1087 CG3269-RB 144..787 15..658 3220 100 Plus
Rab2-RA 1712 CG3269-RA 144..787 15..658 3220 100 Plus
Rab14-RD 878 CG4212-RD 105..343 38..276 310 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6698047..6698386 221..560 1700 100 Plus
2R 25286936 2R 6697413..6697575 60..222 815 100 Plus
2R 25286936 2R 6698444..6698544 558..658 505 100 Plus
2R 25286936 2R 6696882..6696940 15..73 250 94.9 Plus
2L 23513712 2L 14357540..14357688 128..276 250 77.9 Plus
2L 23513712 2L 14357385..14357450 38..103 180 84.8 Plus
Blast to na_te.dros performed on 2015-02-13 01:08:52 has no hits.

BS06407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:00 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:48 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3269-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:31 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 144..790 15..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:02 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 144..790 15..661 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:02 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6698446..6698547 560..661 99   Plus
2R 6696882..6696929 15..62 100 -> Plus
2R 6697416..6697575 63..222 100 -> Plus
2R 6698049..6698385 223..559 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:31 Download gff for BS06407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2584387..2584434 15..62 100 -> Plus
arm_2R 2584921..2585080 63..222 100 -> Plus
arm_2R 2585554..2585890 223..559 100 -> Plus
arm_2R 2585951..2586052 560..661 99   Plus

BS06407.complete Sequence

674 bp (674 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635478

> BS06407.complete
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCTAGAAGCTTTCTAGACCAT

BS06407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rab2-RB 642 CG3269-PB 1..642 17..658 3210 100 Plus
Rab2-RA 642 CG3269-PA 1..642 17..658 3210 100 Plus
Rab14-RD 648 CG4212-PD 37..275 38..276 295 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rab2-RB 1087 CG3269-RB 144..787 15..658 3220 100 Plus
Rab2-RA 1712 CG3269-RA 144..787 15..658 3220 100 Plus
Rab14-RD 878 CG4212-RD 105..343 38..276 295 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6698047..6698386 221..560 1700 100 Plus
2R 25286936 2R 6697413..6697575 60..222 815 100 Plus
2R 25286936 2R 6698444..6698544 558..658 505 100 Plus
2R 25286936 2R 6696882..6696940 15..73 250 94.9 Plus
2L 23513712 2L 14357540..14357688 128..276 250 77.9 Plus
2L 23513712 2L 14357385..14357450 38..103 180 84.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:25:36 has no hits.

BS06407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:23 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:43 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 161..807 15..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:43 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 146..787 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:23 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 161..807 15..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:15 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
Rab2-RA 146..787 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:15 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6697416..6697575 63..222 100 -> Plus
2R 6698049..6698385 223..559 100 -> Plus
2R 6696884..6696929 17..62 100 -> Plus
2R 6698446..6698544 560..658 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:43 Download gff for BS06407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2584389..2584434 17..62 100 -> Plus
arm_2R 2584921..2585080 63..222 100 -> Plus
arm_2R 2585554..2585890 223..559 100 -> Plus
arm_2R 2585951..2586049 560..658 100   Plus

BS06407.pep Sequence

Translation from 16 to 657

> BS06407.pep
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI
DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW
LEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSA
RTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTNPSLPG
AGGAAGAANSGCC*

BS06407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rab2-PB 213 CG3269-PB 1..213 1..213 1103 100 Plus
Rab2-PA 213 CG3269-PA 1..213 1..213 1103 100 Plus
Rab14-PD 215 CG4212-PD 7..213 2..212 648 60.2 Plus
Rab14-PA 215 CG4212-PA 7..213 2..212 648 60.2 Plus
Rab14-PB 239 CG4212-PB 31..237 2..212 648 60.2 Plus