Clone Sequence Records
BS06407.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06407.3prime
ATGGTCTAGAAAGCTTCTAGCAGCAGCCACTGTTTGCTGCTCCAGCTGCT
CCTCCGGCTCCTGGGAGCGACGGGTTTGTGGGGGAGTGCTGTTGGCCGAT
CTTAATGCCGTTTGCCTCATTGTTGATGTCGAAGACACCTTCCTGGATCT
TCTCGTAAATCTCTTTGGCCGTATTTATGAACGCCTCCTCTACGTTGGCA
GCTGTGCGCGCAGAAGTCTCCATGAAGACCAGTCCGTGCTCGCGGGCGAA
GGCCTCGCCCTCCTCTTTCTTCACCTCACGCCGCGAATCCAAATCGCTCT
TGTTGCCTATCAGCATAATGACCATGTTCGAGTTCGAGTGCTGACGCGCA
TCCTCCAGCCAGGTGGTCAGGTGGTTGAAGGTCTCCCGTCGCGTGATGTC
GTACACCAGCAAGGCGCCAGCAGCTCCGCGGTAATAAGAGCGTGTGATAG
ATCTGAAAGCCTCCTGCCCAGCCGTGTCCCAGATTTGAAGCTTGATCTGC
TTGCCGTCGATGGTGATCATGCGTGCTCCGAACTCCACGCCAATGGTCAG
GTCGTGCACCGGCTGGAATCGCTTGTCCGTGAACTGGAGCAGCAGACAGG
ACTTGCCCACGCCTGTGTCTCCGATAATGATGTATTTGAACAAGTACGCG
TAGGACATGTCGACTGATAACT
BS06407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3269-PA | 642 | Rab2-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..787 | 660..17 | 3220 | 100 | Minus |
Rab2-RA | 1712 | CG3269-RA | 144..787 | 660..17 | 3220 | 100 | Minus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 637..399 | 310 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 454..115 | 1700 | 100 | Minus |
2R | 25286936 | 2R | 6697413..6697575 | 615..453 | 815 | 100 | Minus |
2R | 25286936 | 2R | 6698444..6698544 | 117..17 | 505 | 100 | Minus |
2R | 25286936 | 2R | 6696882..6696940 | 660..602 | 250 | 94.9 | Minus |
2L | 23513712 | 2L | 14357540..14357688 | 547..399 | 250 | 77.9 | Minus |
2L | 23513712 | 2L | 14357385..14357450 | 637..572 | 180 | 84.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:31:33 has no hits.
BS06407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:39:59 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:46 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3269-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:33 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..790 | 14..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:43 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..790 | 14..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:43 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6696882..6696929 | 613..660 | 100 | -> | Minus |
2R | 6697416..6697575 | 453..612 | 100 | -> | Minus |
2R | 6698049..6698385 | 116..452 | 100 | -> | Minus |
2R | 6698446..6698547 | 14..115 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:33 Download gff for
BS06407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2584387..2584434 | 613..660 | 100 | -> | Minus |
arm_2R | 2584921..2585080 | 453..612 | 100 | -> | Minus |
arm_2R | 2585554..2585890 | 116..452 | 100 | -> | Minus |
arm_2R | 2585951..2586052 | 14..115 | 99 | | Minus |
BS06407.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06407.5prime
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCTAGAAGCTTTCTAGACC
BS06407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3269-PA | 642 | Rab2-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..787 | 15..658 | 3220 | 100 | Plus |
Rab2-RA | 1712 | CG3269-RA | 144..787 | 15..658 | 3220 | 100 | Plus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 38..276 | 310 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 221..560 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 6697413..6697575 | 60..222 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6698444..6698544 | 558..658 | 505 | 100 | Plus |
2R | 25286936 | 2R | 6696882..6696940 | 15..73 | 250 | 94.9 | Plus |
2L | 23513712 | 2L | 14357540..14357688 | 128..276 | 250 | 77.9 | Plus |
2L | 23513712 | 2L | 14357385..14357450 | 38..103 | 180 | 84.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:08:52 has no hits.
BS06407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:00 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:48 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3269-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:31 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..790 | 15..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:02 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..790 | 15..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:02 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6698446..6698547 | 560..661 | 99 | | Plus |
2R | 6696882..6696929 | 15..62 | 100 | -> | Plus |
2R | 6697416..6697575 | 63..222 | 100 | -> | Plus |
2R | 6698049..6698385 | 223..559 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:31 Download gff for
BS06407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2584387..2584434 | 15..62 | 100 | -> | Plus |
arm_2R | 2584921..2585080 | 63..222 | 100 | -> | Plus |
arm_2R | 2585554..2585890 | 223..559 | 100 | -> | Plus |
arm_2R | 2585951..2586052 | 560..661 | 99 | | Plus |
BS06407.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635478
> BS06407.complete
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCTAGAAGCTTTCTAGACCAT
BS06407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 642 | CG3269-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
Rab2-RA | 642 | CG3269-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Rab14-RD | 648 | CG4212-PD | 37..275 | 38..276 | 295 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..787 | 15..658 | 3220 | 100 | Plus |
Rab2-RA | 1712 | CG3269-RA | 144..787 | 15..658 | 3220 | 100 | Plus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 38..276 | 295 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 221..560 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 6697413..6697575 | 60..222 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6698444..6698544 | 558..658 | 505 | 100 | Plus |
2R | 25286936 | 2R | 6696882..6696940 | 15..73 | 250 | 94.9 | Plus |
2L | 23513712 | 2L | 14357540..14357688 | 128..276 | 250 | 77.9 | Plus |
2L | 23513712 | 2L | 14357385..14357450 | 38..103 | 180 | 84.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:36 has no hits.
BS06407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:23 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:43 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 161..807 | 15..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:43 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 146..787 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:23 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 161..807 | 15..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:15 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 146..787 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:15 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6697416..6697575 | 63..222 | 100 | -> | Plus |
2R | 6698049..6698385 | 223..559 | 100 | -> | Plus |
2R | 6696884..6696929 | 17..62 | 100 | -> | Plus |
2R | 6698446..6698544 | 560..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:43 Download gff for
BS06407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2584389..2584434 | 17..62 | 100 | -> | Plus |
arm_2R | 2584921..2585080 | 63..222 | 100 | -> | Plus |
arm_2R | 2585554..2585890 | 223..559 | 100 | -> | Plus |
arm_2R | 2585951..2586049 | 560..658 | 100 | | Plus |
BS06407.pep Sequence
Translation from 16 to 657
> BS06407.pep
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI
DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW
LEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSA
RTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTNPSLPG
AGGAAGAANSGCC*
BS06407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-PB | 213 | CG3269-PB | 1..213 | 1..213 | 1103 | 100 | Plus |
Rab2-PA | 213 | CG3269-PA | 1..213 | 1..213 | 1103 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 7..213 | 2..212 | 648 | 60.2 | Plus |
Rab14-PA | 215 | CG4212-PA | 7..213 | 2..212 | 648 | 60.2 | Plus |
Rab14-PB | 239 | CG4212-PB | 31..237 | 2..212 | 648 | 60.2 | Plus |