Clone BS06408 Report

Search the DGRC for BS06408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3955-RA
Protein status:BS06408.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06408.3prime Sequence

628 bp (627 high quality bases) assembled on 2005-11-08

> BS06408.3prime
ATGGTCTAGAAAGCTTCTATTGCAGCTTGAGGAGAACGTGGTCGGCGTGC
CGTTTGTACAGGACCAGCGACATGTTGACCAGAAAGGGGGCGGCCAGCCA
AAACAGCCGTGTGCCGATGCCCGTGTCCTCGCGATGGAAGATCCCGGATG
CAGCTCCTCGACCCGTATTACAAAAGGACTCCTCGCAGCAGGAAGTGCAG
GAATAGAGCTTGGTCCGCTCGCCAATGATGATGCAGCCGGGCTCACAGTT
GGCAGTACATCGCCGGTCCAGGGACCACATCTTGGGCGAACTGGTGGAGT
TCTCCGTGCTGGTGGTGTACGAGAACCGCTTGACCATGCAGATGAACTCC
TCGCCCTGGCACTTTTTCATCAGTGCGGAATCGTTCCGGACCGCCACATC
CACGCAGGCCTCCCCATCATCCATCGTGTGGCAGGCAAAGCACCACAGTT
TGTTCACCCTTTCGATGGCTGCCGCCGTGCGGTGAATGTGCCCGCTGGTC
AGCGAGGTACTGGGTCCGGGTCCGGGTGAACTGGTGCCTGTCACATTATT
CACACAGGCTGTGAACACGATGGACGAACTGGTCAGCAGGAAGTAGAGCA
ACGTGACGAAGGGCCGGATCATGTCGAC

BS06408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 606 CG3955-RA 1..606 622..17 3005 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..720 622..17 3015 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128192..13128510 17..335 1580 99.7 Plus
2R 25286936 2R 13128577..13128788 333..544 1060 100 Plus
2R 25286936 2R 13128860..13128938 544..622 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:27:06 has no hits.

BS06408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:01 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..622 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:50 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..622 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:49:32 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..726 9..628 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:56 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..726 9..628 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:56 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13128186..13128509 9..334 98 <- Plus
2R 13128579..13128787 335..543 100 <- Plus
2R 13128860..13128940 544..628 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:49:32 Download gff for BS06408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9015691..9016014 9..334 98 <- Plus
arm_2R 9016084..9016292 335..543 100 <- Plus
arm_2R 9016365..9016445 544..628 95   Plus

BS06408.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-03

> BS06408.5prime
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAATAGAAGCTTTCTAGACC

BS06408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 606 CG3955-RA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..720 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128192..13128510 622..304 1595 100 Minus
2R 25286936 2R 13128577..13128788 306..95 1060 100 Minus
2R 25286936 2R 13128860..13128938 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:54:20 has no hits.

BS06408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:02 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:51 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:55 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..630 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:26:26 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..630 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:26:26 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13128186..13128509 305..630 99 <- Minus
2R 13128579..13128787 96..304 100 <- Minus
2R 13128860..13128942 9..95 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:55 Download gff for BS06408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9015691..9016014 305..630 99 <- Minus
arm_2R 9016084..9016292 96..304 100 <- Minus
arm_2R 9016365..9016447 9..95 95   Minus

BS06408.complete Sequence

638 bp (638 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635479

> BS06408.complete
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAATAGAAGCTTTCTAGACCAT

BS06408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 606 CG3955-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..720 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128192..13128510 622..304 1595 100 Minus
2R 25286936 2R 13128577..13128788 306..95 1060 100 Minus
2R 25286936 2R 13128860..13128938 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:21 has no hits.

BS06408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:42 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:07 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..728 9..630 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:18 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 115..720 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:42 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..728 9..630 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:44 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 115..720 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:44 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13128192..13128509 305..622 100 <- Minus
2R 13128579..13128787 96..304 100 <- Minus
2R 13128860..13128938 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:18 Download gff for BS06408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9016084..9016292 96..304 100 <- Minus
arm_2R 9016365..9016443 17..95 100   Minus
arm_2R 9015697..9016014 305..622 100 <- Minus

BS06408.pep Sequence

Translation from 16 to 621

> BS06408.pep
MIRPFVTLLYFLLTSSSIVFTACVNNVTGTSSPGPGPSTSLTSGHIHRTA
AAIERVNKLWCFACHTMDDGEACVDVAVRNDSALMKKCQGEEFICMVKRF
SYTTSTENSTSSPKMWSLDRRCTANCEPGCIIIGERTKLYSCTSCCEESF
CNTGRGAASGIFHREDTGIGTRLFWLAAPFLVNMSLVLYKRHAGHVLLKL
Q*

BS06408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 201 CG3955-PA 1..201 1..201 1080 100 Plus