Clone Sequence Records
BS06409.3prime Sequence
420 bp (419 high quality bases) assembled on 2005-12-03
> BS06409.3prime
ATGGTCTAGAAAGCTTCTAAGAGCTTCTTAGCGATTGAACAAGAGTCCTT
GTGGCACACTCACCCACTCCCGCAGCGGTGACCATGGGAAAGTCCTCCTC
CAGGACCTCCACTTGCCCCCGATCCTTGAGATTGATGTGCAGTCGGCCCA
GATGATGCTTCTGTCTTAAGTGCATGTAAATGGCGCCGATGATGAGCAGA
AGGGCGATGAAAATGGCGCCCGTACTCAGGACTTGGCGAGTGCAGCAGGA
CCTTCGAGTCCATCGTTTCCGCTTACGACTTTCCCCGGACATTGACAGCG
CTTCGGCATATTCCTGATGCTCCACCACCTTGGACTCATCCGTTTCCACA
TCATCCTCACTGTATTTGGCCAATTCCGCCACACTGCTGCTGCATGTGGG
CTCCATGTCGACTGATAACT
BS06409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PD | 390 | CG14823-RD | 1..390 | 406..17 | 1950 | 100 | Minus |
CG14823-PA | 792 | CG14823-RA | 1..343 | 406..64 | 1715 | 100 | Minus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 406..64 | 1715 | 100 | Minus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 406..64 | 1715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RD | 1108 | CG14823-RD | 66..461 | 411..16 | 1965 | 99.7 | Minus |
CG14823-RB | 974 | CG14823-RB | 66..417 | 411..60 | 1730 | 99.4 | Minus |
CG14823-RA | 2098 | CG14823-RA | 66..413 | 411..64 | 1725 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066774 | 411..16 | 1965 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:11:43 has no hits.
BS06409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:03 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PD | 1..390 | 17..406 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:52 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PD | 1..390 | 17..406 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:09 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 11..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:00 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 11..414 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:00 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066777 | 11..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:09 Download gff for
BS06409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059877 | 11..414 | 99 | | Minus |
BS06409.5prime Sequence
420 bp (419 high quality bases) assembled on 2005-12-03
> BS06409.5prime
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTTAGAAGCTTTCTAGACC
BS06409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PD | 390 | CG14823-RD | 1..390 | 17..406 | 1950 | 100 | Plus |
CG14823-PA | 792 | CG14823-RA | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RD | 1108 | CG14823-RD | 66..461 | 12..407 | 1965 | 99.7 | Plus |
CG14823-RB | 974 | CG14823-RB | 66..417 | 12..363 | 1730 | 99.4 | Plus |
CG14823-RA | 2098 | CG14823-RA | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066774 | 12..407 | 1965 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:48:32 has no hits.
BS06409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:04 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PD | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:54 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PD | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:47 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:39 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 9..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:39 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066777 | 9..412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:47 Download gff for
BS06409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059877 | 9..412 | 99 | | Plus |
BS06409.complete Sequence
422 bp (422 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635480
> BS06409.complete
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTTAGAAGCTTTCTAGACCAT
BS06409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RD | 390 | CG14823-PD | 1..390 | 17..406 | 1950 | 100 | Plus |
CG14823-RB | 351 | CG14823-PB | 1..347 | 17..363 | 1720 | 99.7 | Plus |
CG14823-RA | 792 | CG14823-PA | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RD | 1108 | CG14823-RD | 66..461 | 12..407 | 1965 | 99.7 | Plus |
CG14823-RB | 974 | CG14823-RB | 66..417 | 12..363 | 1730 | 99.4 | Plus |
CG14823-RA | 2098 | CG14823-RA | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066774 | 12..407 | 1965 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:03:21 has no hits.
BS06409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:43 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:09 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:32 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 71..460 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:44 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 62..464 | 9..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:38 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RD | 71..460 | 17..406 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:38 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066384..7066773 | 17..406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:32 Download gff for
BS06409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059484..7059873 | 17..406 | 100 | | Plus |
BS06409.pep Sequence
Translation from 16 to 405
> BS06409.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVGECATRTLVQSLRSS*
BS06409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PD | 129 | CG14823-PD | 1..129 | 1..129 | 655 | 100 | Plus |
CG14823-PB | 116 | CG14823-PB | 1..116 | 1..116 | 584 | 98.3 | Plus |
CG14823-PA | 263 | CG14823-PA | 1..114 | 1..114 | 582 | 100 | Plus |