Clone BS06409 Report

Search the DGRC for BS06409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG14823-RD
Protein status:BS06409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06409.3prime Sequence

420 bp (419 high quality bases) assembled on 2005-12-03

> BS06409.3prime
ATGGTCTAGAAAGCTTCTAAGAGCTTCTTAGCGATTGAACAAGAGTCCTT
GTGGCACACTCACCCACTCCCGCAGCGGTGACCATGGGAAAGTCCTCCTC
CAGGACCTCCACTTGCCCCCGATCCTTGAGATTGATGTGCAGTCGGCCCA
GATGATGCTTCTGTCTTAAGTGCATGTAAATGGCGCCGATGATGAGCAGA
AGGGCGATGAAAATGGCGCCCGTACTCAGGACTTGGCGAGTGCAGCAGGA
CCTTCGAGTCCATCGTTTCCGCTTACGACTTTCCCCGGACATTGACAGCG
CTTCGGCATATTCCTGATGCTCCACCACCTTGGACTCATCCGTTTCCACA
TCATCCTCACTGTATTTGGCCAATTCCGCCACACTGCTGCTGCATGTGGG
CTCCATGTCGACTGATAACT

BS06409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 390 CG14823-RD 1..390 406..17 1950 100 Minus
CG14823-PA 792 CG14823-RA 1..343 406..64 1715 100 Minus
CG14823-PB 351 CG14823-RB 1..343 406..64 1715 100 Minus
CG14823-PC 351 CG14823-RC 1..343 406..64 1715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..461 411..16 1965 99.7 Minus
CG14823-RB 974 CG14823-RB 66..417 411..60 1730 99.4 Minus
CG14823-RA 2098 CG14823-RA 66..413 411..64 1725 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066774 411..16 1965 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 19:11:43 has no hits.

BS06409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:03 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..406 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:52 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:09 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 11..414 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:00 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 11..414 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:00 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7066375..7066777 11..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:09 Download gff for BS06409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059475..7059877 11..414 99   Minus

BS06409.5prime Sequence

420 bp (419 high quality bases) assembled on 2005-12-03

> BS06409.5prime
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTTAGAAGCTTTCTAGACC

BS06409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 390 CG14823-RD 1..390 17..406 1950 100 Plus
CG14823-PA 792 CG14823-RA 1..343 17..359 1715 100 Plus
CG14823-PB 351 CG14823-RB 1..343 17..359 1715 100 Plus
CG14823-PC 351 CG14823-RC 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..461 12..407 1965 99.7 Plus
CG14823-RB 974 CG14823-RB 66..417 12..363 1730 99.4 Plus
CG14823-RA 2098 CG14823-RA 66..413 12..359 1725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066774 12..407 1965 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:48:32 has no hits.

BS06409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:04 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..406 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:54 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-PD 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:57:47 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:39 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:39 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7066375..7066777 9..412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:57:47 Download gff for BS06409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059475..7059877 9..412 99   Plus

BS06409.complete Sequence

422 bp (422 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635480

> BS06409.complete
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGGTGAGTGTGCCACAAGGACTCTTGTTCAATCGCTAAGAAGC
TCTTAGAAGCTTTCTAGACCAT

BS06409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 390 CG14823-PD 1..390 17..406 1950 100 Plus
CG14823-RB 351 CG14823-PB 1..347 17..363 1720 99.7 Plus
CG14823-RA 792 CG14823-PA 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-RD 1108 CG14823-RD 66..461 12..407 1965 99.7 Plus
CG14823-RB 974 CG14823-RB 66..417 12..363 1730 99.4 Plus
CG14823-RA 2098 CG14823-RA 66..413 12..359 1725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7066379..7066774 12..407 1965 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:03:21 has no hits.

BS06409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:43 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:56:09 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:32 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 71..460 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:44 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 62..464 9..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:38 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
CG14823-RD 71..460 17..406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:38 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7066384..7066773 17..406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:32 Download gff for BS06409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7059484..7059873 17..406 100   Plus

BS06409.pep Sequence

Translation from 16 to 405

> BS06409.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVGECATRTLVQSLRSS*

BS06409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14823-PD 129 CG14823-PD 1..129 1..129 655 100 Plus
CG14823-PB 116 CG14823-PB 1..116 1..116 584 98.3 Plus
CG14823-PA 263 CG14823-PA 1..114 1..114 582 100 Plus