Clone BS06410 Report

Search the DGRC for BS06410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG2789-RA
Protein status:BS06410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06410.3prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS06410.3prime
ATGGTCTAGAAAGCTTTTAACTCGACTTAGCGTGGCTGCTAGAGGGCTTC
TCCTCGTCCTTGGGCGCCTGCTCCTTCTCCGGGTTCAGCTTCCAGATGGC
GTAGTTCAGAGCCGTCGCGAATCCCAGCCAGGCGACGTAGGGTACGAAGA
GCAATCCAGCGGTCTTGTTCACTCGGTAGAACAGAACGCCGCAGGCGGAC
GCGGCGGCCGTGAGTGCAACTATGTCAATAAGGCCGCCCTTGATGTTGTG
CTGCCCGAAGAAAATGGGCGTCCACGCCCAGTTCAAGGCCAGCTGGGTGC
CGTACGCGATCAGGGGCAGTTTGGCCGCCTCGCCGGCGAAGCCTCCGCCA
TCACGCCACACCAGGTAGGAGCCGTAGCCCATTCCCGCGTACAAGGAGAT
CCACATCGGCGCAAAGACCGAGTTGGGCGGCTTGAAGGACGGGAACTTAA
GGTTGGCGTACCAGCTCTGGAGATGCTGCCTGGTCAGCCGCCCGTTATAG
ATGCCGCCCAGATTGGGCAGAATCACGGCCCCGGCGATGCGGAGAATGTT
TCCAGCACACGGACGATCAGCCATGTCGACTGATAACT

BS06410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 558 CG2789-RA 1..558 574..17 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..645 574..17 2790 100 Minus
rempA-RC 5308 CG11838-RC 273..612 235..574 1700 100 Plus
rempA-RC 5308 CG11838-RC 1..214 22..235 1070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 574..235 1700 100 Minus
2L 23513712 2L 560097..560315 235..17 1095 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:44:33 has no hits.

BS06410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:05 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..574 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:55 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..574 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:56 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 13..574 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:11 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 13..574 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:11 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 559699..560037 236..574 100 -> Minus
2L 560097..560317 13..235 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:56 Download gff for BS06410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 236..574 100 -> Minus
arm_2L 560097..560317 13..235 99   Minus

BS06410.5prime Sequence

588 bp (587 high quality bases) assembled on 2005-12-03

> BS06410.5prime
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTTAAAAGCTTTCTAGACC

BS06410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 558 CG2789-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..645 17..574 2790 100 Plus
rempA-RC 5308 CG11838-RC 273..612 356..17 1700 100 Minus
rempA-RC 5308 CG11838-RC 1..214 569..356 1070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 17..356 1700 100 Plus
2L 23513712 2L 560097..560315 356..574 1095 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:52:21 has no hits.

BS06410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:06 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..574 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:57 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-PA 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:27 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 17..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:48 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..647 17..578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:48 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 560097..560317 356..578 99   Plus
2L 559699..560037 17..355 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:27 Download gff for BS06410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 17..355 100 -> Plus
arm_2L 560097..560317 356..578 99   Plus

BS06410.complete Sequence

590 bp (590 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635481

> BS06410.complete
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTTAAAAGCTTTCTAGACCAT

BS06410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 558 CG2789-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-RA 853 CG2789-RA 88..645 17..574 2790 100 Plus
rempA-RC 5308 CG11838-RC 273..612 356..17 1700 100 Minus
rempA-RC 5308 CG11838-RC 1..214 569..356 1070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 559699..560038 17..356 1700 100 Plus
2L 23513712 2L 560097..560315 356..574 1095 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:56:40 has no hits.

BS06410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:24 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:45 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 89..648 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:04 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..643 17..572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:24 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 89..648 17..578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:47 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2789-RA 88..643 17..572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:47 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 559699..560037 17..355 100 -> Plus
2L 560097..560313 356..572 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:04 Download gff for BS06410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 559699..560037 17..355 100 -> Plus
arm_2L 560097..560313 356..572 100   Plus

BS06410.pep Sequence

Translation from 16 to 573

> BS06410.pep
MADRPCAGNILRIAGAVILPNLGGIYNGRLTRQHLQSWYANLKFPSFKPP
NSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWA
WTPIFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLFVPYVAWL
GFATALNYAIWKLNPEKEQAPKDEEKPSSSHAKSS*

BS06410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2789-PA 185 CG2789-PA 1..185 1..185 993 100 Plus