Clone Sequence Records
BS06410.3prime Sequence
588 bp (587 high quality bases) assembled on 2005-12-03
> BS06410.3prime
ATGGTCTAGAAAGCTTTTAACTCGACTTAGCGTGGCTGCTAGAGGGCTTC
TCCTCGTCCTTGGGCGCCTGCTCCTTCTCCGGGTTCAGCTTCCAGATGGC
GTAGTTCAGAGCCGTCGCGAATCCCAGCCAGGCGACGTAGGGTACGAAGA
GCAATCCAGCGGTCTTGTTCACTCGGTAGAACAGAACGCCGCAGGCGGAC
GCGGCGGCCGTGAGTGCAACTATGTCAATAAGGCCGCCCTTGATGTTGTG
CTGCCCGAAGAAAATGGGCGTCCACGCCCAGTTCAAGGCCAGCTGGGTGC
CGTACGCGATCAGGGGCAGTTTGGCCGCCTCGCCGGCGAAGCCTCCGCCA
TCACGCCACACCAGGTAGGAGCCGTAGCCCATTCCCGCGTACAAGGAGAT
CCACATCGGCGCAAAGACCGAGTTGGGCGGCTTGAAGGACGGGAACTTAA
GGTTGGCGTACCAGCTCTGGAGATGCTGCCTGGTCAGCCGCCCGTTATAG
ATGCCGCCCAGATTGGGCAGAATCACGGCCCCGGCGATGCGGAGAATGTT
TCCAGCACACGGACGATCAGCCATGTCGACTGATAACT
BS06410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-PA | 558 | CG2789-RA | 1..558 | 574..17 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-RA | 853 | CG2789-RA | 88..645 | 574..17 | 2790 | 100 | Minus |
rempA-RC | 5308 | CG11838-RC | 273..612 | 235..574 | 1700 | 100 | Plus |
rempA-RC | 5308 | CG11838-RC | 1..214 | 22..235 | 1070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 559699..560038 | 574..235 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 560097..560315 | 235..17 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:44:33 has no hits.
BS06410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:05 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-PA | 1..558 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:55 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-PA | 1..558 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:56 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..647 | 13..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:11 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..647 | 13..574 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:11 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 559699..560037 | 236..574 | 100 | -> | Minus |
2L | 560097..560317 | 13..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:56 Download gff for
BS06410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 559699..560037 | 236..574 | 100 | -> | Minus |
arm_2L | 560097..560317 | 13..235 | 99 | | Minus |
BS06410.5prime Sequence
588 bp (587 high quality bases) assembled on 2005-12-03
> BS06410.5prime
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTTAAAAGCTTTCTAGACC
BS06410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-PA | 558 | CG2789-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-RA | 853 | CG2789-RA | 88..645 | 17..574 | 2790 | 100 | Plus |
rempA-RC | 5308 | CG11838-RC | 273..612 | 356..17 | 1700 | 100 | Minus |
rempA-RC | 5308 | CG11838-RC | 1..214 | 569..356 | 1070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 559699..560038 | 17..356 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 560097..560315 | 356..574 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:52:21 has no hits.
BS06410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:06 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-PA | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:57 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-PA | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:27 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..647 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:48 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..647 | 17..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:48 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 560097..560317 | 356..578 | 99 | | Plus |
2L | 559699..560037 | 17..355 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:27 Download gff for
BS06410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 559699..560037 | 17..355 | 100 | -> | Plus |
arm_2L | 560097..560317 | 356..578 | 99 | | Plus |
BS06410.complete Sequence
590 bp (590 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635481
> BS06410.complete
GAAGTTATCAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCC
GCATCGCCGGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGG
CGGCTGACCAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCC
GTCCTTCAAGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGT
ACGCGGGAATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGC
TTCGCCGGCGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCT
GGCCTTGAACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCA
AGGGCGGCCTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGC
GGCGTTCTGTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACC
CTACGTCGCCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGA
AGCTGAACCCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCT
AGCAGCCACGCTAAGTCGAGTTAAAAGCTTTCTAGACCAT
BS06410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-RA | 558 | CG2789-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-RA | 853 | CG2789-RA | 88..645 | 17..574 | 2790 | 100 | Plus |
rempA-RC | 5308 | CG11838-RC | 273..612 | 356..17 | 1700 | 100 | Minus |
rempA-RC | 5308 | CG11838-RC | 1..214 | 569..356 | 1070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 559699..560038 | 17..356 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 560097..560315 | 356..574 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:56:40 has no hits.
BS06410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:24 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:45 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 89..648 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:04 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..643 | 17..572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:24 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 89..648 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:47 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2789-RA | 88..643 | 17..572 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:47 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 559699..560037 | 17..355 | 100 | -> | Plus |
2L | 560097..560313 | 356..572 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:04 Download gff for
BS06410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 559699..560037 | 17..355 | 100 | -> | Plus |
arm_2L | 560097..560313 | 356..572 | 100 | | Plus |
BS06410.pep Sequence
Translation from 16 to 573
> BS06410.pep
MADRPCAGNILRIAGAVILPNLGGIYNGRLTRQHLQSWYANLKFPSFKPP
NSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWA
WTPIFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLFVPYVAWL
GFATALNYAIWKLNPEKEQAPKDEEKPSSSHAKSS*
BS06410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2789-PA | 185 | CG2789-PA | 1..185 | 1..185 | 993 | 100 | Plus |