Clone BS06411 Report

Search the DGRC for BS06411

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptPgam5-RA
Protein status:BS06411.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06411.3prime Sequence

900 bp (811 high quality bases) assembled on 2005-12-03

> BS06411.3prime
ATGGTCTAGAAAGCTTCTAAACCACGTTTTTGACGTCGCGCGGTATGCGA
TTGGTAAGCAGCTCGGCGGGCATAAAGCCGGAGTCGCCCAGGTACTTGAT
GGACACGTTGCCGGATGGACTGATGGTCAGCCAGGTGATGGAAGCGTGAT
TAATGTTAATCCGTAGCCAACCCTCGGCGGGGAACTGCAGGGCTCGGCAG
ACAAAGTAGCGGATCACGTTGCCGTGTCCCACGATCAGGGTATAGCTCTC
CTTCTCTTGGTCGGGATAGGCGCGGTGGAAGTATCGGCGAAAGCCGGCCT
CTATGCGCGATCCGTCGCGAAGGAACTGAGATGCCTCCGGCTTCCAGTGG
CCGACTGGCGGCTGGGGCGGAATAGGCGCTCCTTCACGCAGGAAGGCACA
GTTCACCACTTTCTCTTTTTCGAAATCGATCTGCTTGAGAATAATATCGG
AAGTCTCCTGGGCCCGCACCATTGTGGAGGCTACTACCTTGTCCCACTTG
ATGCCCAGCTCGCAGAGCCGTTTCCCAGTAAACTCCGCCTGCTTGCGGCC
GCGCTCCGTGAGATGATGCGTGTCATCCGAGTCACCCACGTCCAGATACT
CGCCATGCCGCACTAGGATAATGTGGCGCGCCTTCTTGGCCTTCGCCTTC
TCAAGCTCCGCGTTGTAGCGGTTCTCCTCCTCCGGCTGGCTGTTTCGCAG
TGGACGCACGAGGGCCCGTGGCTCCCGGCAATCCCAGTTGGTGTCCCAAA
GGGCCCACGGATCCACCGGCTTATCACTGTGCGTCCACGAGTTCTGCACG
ACCGTCTGCGGGTCCCGCAGCCGCTGTAGGTAGTAAGCCGCCAGTCCGGC
TCCTGTGCCGCACACGAAGCTAGTCAACTTTCGCATGTCGACTGATAACT

BS06411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14816-PA 870 CG14816-RA 1..870 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 36..905 886..17 4350 100 Minus
Pgam5-RB 1097 CG14816-RB 36..902 886..17 4295 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873530 329..886 2790 100 Plus
X 23542271 X 1872595..1872906 17..328 1560 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:21:53 has no hits.

BS06411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:07 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..870 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:58 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..870 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:04 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..905 17..886 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:46 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..905 17..886 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:46 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1872595..1872906 17..328 100 <- Plus
X 1872973..1873530 329..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:04 Download gff for BS06411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766628..1766939 17..328 100 <- Plus
arm_X 1767006..1767563 329..886 100   Plus

BS06411.5prime Sequence

875 bp (831 high quality bases) assembled on 2005-12-03

> BS06411.5prime
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAA

BS06411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14816-PA 870 CG14816-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 36..894 17..875 4295 100 Plus
Pgam5-RB 1097 CG14816-RB 36..891 17..875 4240 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873530 574..17 2790 100 Minus
X 23542271 X 1872606..1872906 875..575 1505 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:05:53 has no hits.

BS06411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:07 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:59 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:07 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..890 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:29 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..890 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:29 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1872610..1872906 575..871 100 <- Minus
X 1872973..1873530 17..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:07 Download gff for BS06411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766643..1766939 575..871 100 <- Minus
arm_X 1767006..1767563 17..574 100   Minus

BS06411.complete Sequence

902 bp (902 high quality bases) assembled on 2005-12-09

> BS06411.complete
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAAACGTGGTTTAGAAGCTTTCTAGACC
AT

BS06411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 870 CG14816-PA 1..870 17..886 4350 100 Plus
Pgam5-RB 867 CG14816-PB 1..867 17..886 4270 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 36..905 17..886 4350 100 Plus
Pgam5-RB 1097 CG14816-RB 36..902 17..886 4270 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873530 574..17 2790 100 Minus
X 23542271 X 1872595..1872906 886..575 1560 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:59:31 has no hits.

BS06411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:25 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:47 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 1..877 13..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:21 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..905 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:25 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 1..877 13..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:51 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..905 17..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:51 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
X 1872595..1872906 575..886 100 <- Minus
X 1872973..1873530 17..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:21 Download gff for BS06411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766628..1766939 575..886 100 <- Minus
arm_X 1767006..1767563 17..574 100   Minus

BS06411.pep Sequence

Translation from 16 to 885

> BS06411.pep
MRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWDTN
WDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYLDV
GDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDIIL
KQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAGFR
RYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHASI
TWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVV*

BS06411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-PA 289 CG14816-PA 1..289 1..289 1553 100 Plus
Pgam5-PB 288 CG14816-PB 1..288 1..289 1536 99.7 Plus
Pgam5-2-PA 280 CG15874-PA 8..277 2..287 573 44.2 Plus