Clone Sequence Records
BS06411.3prime Sequence
900 bp (811 high quality bases) assembled on 2005-12-03
> BS06411.3prime
ATGGTCTAGAAAGCTTCTAAACCACGTTTTTGACGTCGCGCGGTATGCGA
TTGGTAAGCAGCTCGGCGGGCATAAAGCCGGAGTCGCCCAGGTACTTGAT
GGACACGTTGCCGGATGGACTGATGGTCAGCCAGGTGATGGAAGCGTGAT
TAATGTTAATCCGTAGCCAACCCTCGGCGGGGAACTGCAGGGCTCGGCAG
ACAAAGTAGCGGATCACGTTGCCGTGTCCCACGATCAGGGTATAGCTCTC
CTTCTCTTGGTCGGGATAGGCGCGGTGGAAGTATCGGCGAAAGCCGGCCT
CTATGCGCGATCCGTCGCGAAGGAACTGAGATGCCTCCGGCTTCCAGTGG
CCGACTGGCGGCTGGGGCGGAATAGGCGCTCCTTCACGCAGGAAGGCACA
GTTCACCACTTTCTCTTTTTCGAAATCGATCTGCTTGAGAATAATATCGG
AAGTCTCCTGGGCCCGCACCATTGTGGAGGCTACTACCTTGTCCCACTTG
ATGCCCAGCTCGCAGAGCCGTTTCCCAGTAAACTCCGCCTGCTTGCGGCC
GCGCTCCGTGAGATGATGCGTGTCATCCGAGTCACCCACGTCCAGATACT
CGCCATGCCGCACTAGGATAATGTGGCGCGCCTTCTTGGCCTTCGCCTTC
TCAAGCTCCGCGTTGTAGCGGTTCTCCTCCTCCGGCTGGCTGTTTCGCAG
TGGACGCACGAGGGCCCGTGGCTCCCGGCAATCCCAGTTGGTGTCCCAAA
GGGCCCACGGATCCACCGGCTTATCACTGTGCGTCCACGAGTTCTGCACG
ACCGTCTGCGGGTCCCGCAGCCGCTGTAGGTAGTAAGCCGCCAGTCCGGC
TCCTGTGCCGCACACGAAGCTAGTCAACTTTCGCATGTCGACTGATAACT
BS06411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14816-PA | 870 | CG14816-RA | 1..870 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 36..905 | 886..17 | 4350 | 100 | Minus |
Pgam5-RB | 1097 | CG14816-RB | 36..902 | 886..17 | 4295 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873530 | 329..886 | 2790 | 100 | Plus |
X | 23542271 | X | 1872595..1872906 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:21:53 has no hits.
BS06411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:07 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..870 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:58 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..870 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:04 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..905 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:46 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..905 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:46 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872595..1872906 | 17..328 | 100 | <- | Plus |
X | 1872973..1873530 | 329..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:04 Download gff for
BS06411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766628..1766939 | 17..328 | 100 | <- | Plus |
arm_X | 1767006..1767563 | 329..886 | 100 | | Plus |
BS06411.5prime Sequence
875 bp (831 high quality bases) assembled on 2005-12-03
> BS06411.5prime
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAA
BS06411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14816-PA | 870 | CG14816-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 36..894 | 17..875 | 4295 | 100 | Plus |
Pgam5-RB | 1097 | CG14816-RB | 36..891 | 17..875 | 4240 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873530 | 574..17 | 2790 | 100 | Minus |
X | 23542271 | X | 1872606..1872906 | 875..575 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:05:53 has no hits.
BS06411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:07 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:18:59 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:07 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..890 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:29 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..890 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:29 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872610..1872906 | 575..871 | 100 | <- | Minus |
X | 1872973..1873530 | 17..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:07 Download gff for
BS06411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766643..1766939 | 575..871 | 100 | <- | Minus |
arm_X | 1767006..1767563 | 17..574 | 100 | | Minus |
BS06411.complete Sequence
902 bp (902 high quality bases) assembled on 2005-12-09
> BS06411.complete
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAAACGTGGTTTAGAAGCTTTCTAGACC
AT
BS06411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 870 | CG14816-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Pgam5-RB | 867 | CG14816-PB | 1..867 | 17..886 | 4270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 36..905 | 17..886 | 4350 | 100 | Plus |
Pgam5-RB | 1097 | CG14816-RB | 36..902 | 17..886 | 4270 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873530 | 574..17 | 2790 | 100 | Minus |
X | 23542271 | X | 1872595..1872906 | 886..575 | 1560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:31 has no hits.
BS06411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:25 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:47 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 1..877 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:21 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..905 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:25 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 1..877 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:51 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..905 | 17..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:51 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872595..1872906 | 575..886 | 100 | <- | Minus |
X | 1872973..1873530 | 17..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:21 Download gff for
BS06411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766628..1766939 | 575..886 | 100 | <- | Minus |
arm_X | 1767006..1767563 | 17..574 | 100 | | Minus |
BS06411.pep Sequence
Translation from 16 to 885
> BS06411.pep
MRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWDTN
WDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYLDV
GDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDIIL
KQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAGFR
RYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHASI
TWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVV*
BS06411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-PA | 289 | CG14816-PA | 1..289 | 1..289 | 1553 | 100 | Plus |
Pgam5-PB | 288 | CG14816-PB | 1..288 | 1..289 | 1536 | 99.7 | Plus |
Pgam5-2-PA | 280 | CG15874-PA | 8..277 | 2..287 | 573 | 44.2 | Plus |