Clone BS06412 Report

Search the DGRC for BS06412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG5762-RA
Protein status:BS06412.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06412.3prime Sequence

633 bp (632 high quality bases) assembled on 2005-12-03

> BS06412.3prime
ATGGTCTAGAAAGCTTTTAGAATAAGAACTGACGTTTTCGGGTGCTGTAG
GCGTTTGACAACCGGAGAGATACAATGGGTGGTGGACAGCTATCGGTGGC
ACGAGCAAATTTGTTGCGTTGGATCATCGCCGCATTGGTGTCCCATTGGT
TGATAAAGGCACGGGCCTCGTCGTCACATGGCTTTGCCGTACTCGGTCTT
TCTTCCTGGGCTCGGCGGCGTCGAGGAGCCTCAGTTTCCATCGACTCCAG
AAAGTCCCGTCTACGATTTCGTTTGGTCGCCACACTGTCCGGGAAATTAA
CCCAGGTGCACTCGTACTTGCGCTTCTCCAGTTCGCGCGGATGGTACTGC
TCGTTATCGAAGCGTTCCTGATCGTCCCCGACCGAGATGCGTCCGTGGCC
CTCGTCCTGCTCCCACATGGAGCGTCGCTTGTTCTTCTTGTACACATCCG
CTTTCTCCCGCTCCCTGAGTATCTGATCGTCTGGCAGGTATTGGCTGCCC
ACTCTGGGCCGCTGGGAACGCCTGGCAATGTGACGCGTTGAGGCGCATTC
GATCCGCGCACGGAGGAGCTCGATGCAACGGTTCACCATCATCCGAGTGC
CACCGTGGATGTTAACCATGTCGACTGATAACT

BS06412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-PA 603 CG5762-RA 1..603 619..17 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-RA 921 CG5762-RA 133..736 619..16 3020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24361137..24361551 205..619 2075 100 Plus
3R 32079331 3R 24360890..24361082 16..208 965 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:26:55 has no hits.

BS06412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:09 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:01 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:43 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 126..743 7..628 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:45 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 126..743 7..628 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:45 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24360881..24361079 7..205 98 <- Plus
3R 24361138..24361558 206..628 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:43 Download gff for BS06412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20186603..20186801 7..205 98 <- Plus
arm_3R 20186860..20187280 206..628 99   Plus

BS06412.5prime Sequence

633 bp (632 high quality bases) assembled on 2005-12-03

> BS06412.5prime
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCTAAAAGCTTTCTAGACC

BS06412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-PA 603 CG5762-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-RA 921 CG5762-RA 133..736 17..620 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24361137..24361551 431..17 2075 100 Minus
3R 32079331 3R 24360890..24361082 620..428 965 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:37:07 has no hits.

BS06412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:10 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:02 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:16 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 126..743 8..629 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:58 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 126..743 8..629 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:58 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24360881..24361079 431..629 98 <- Minus
3R 24361138..24361558 8..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:16 Download gff for BS06412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20186603..20186801 431..629 98 <- Minus
arm_3R 20186860..20187280 8..430 99   Minus

BS06412.complete Sequence

635 bp (635 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635482

> BS06412.complete
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCTAAAAGCTTTCTAGACCAT

BS06412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-RA 603 CG5762-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-RA 921 CG5762-RA 133..736 17..620 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24361137..24361551 431..17 2075 100 Minus
3R 32079331 3R 24360890..24361082 620..428 965 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:09 has no hits.

BS06412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:26 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:48 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 132..749 8..629 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:43 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 133..733 17..617 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:27 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 132..749 8..629 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:06 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5762-RA 133..733 17..617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:06 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24360893..24361079 431..617 100 <- Minus
3R 24361138..24361551 17..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:43 Download gff for BS06412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20186615..20186801 431..617 100 <- Minus
arm_3R 20186860..20187273 17..430 100   Minus

BS06412.pep Sequence

Translation from 16 to 618

> BS06412.pep
MVNIHGGTRMMVNRCIELLRARIECASTRHIARRSQRPRVGSQYLPDDQI
LREREKADVYKKNKRRSMWEQDEGHGRISVGDDQERFDNEQYHPRELEKR
KYECTWVNFPDSVATKRNRRRDFLESMETEAPRRRRAQEERPSTAKPCDD
EARAFINQWDTNAAMIQRNKFARATDSCPPPIVSLRLSNAYSTRKRQFLF
*

BS06412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5762-PA 200 CG5762-PA 1..200 1..200 1063 100 Plus