Clone Sequence Records
BS06412.3prime Sequence
633 bp (632 high quality bases) assembled on 2005-12-03
> BS06412.3prime
ATGGTCTAGAAAGCTTTTAGAATAAGAACTGACGTTTTCGGGTGCTGTAG
GCGTTTGACAACCGGAGAGATACAATGGGTGGTGGACAGCTATCGGTGGC
ACGAGCAAATTTGTTGCGTTGGATCATCGCCGCATTGGTGTCCCATTGGT
TGATAAAGGCACGGGCCTCGTCGTCACATGGCTTTGCCGTACTCGGTCTT
TCTTCCTGGGCTCGGCGGCGTCGAGGAGCCTCAGTTTCCATCGACTCCAG
AAAGTCCCGTCTACGATTTCGTTTGGTCGCCACACTGTCCGGGAAATTAA
CCCAGGTGCACTCGTACTTGCGCTTCTCCAGTTCGCGCGGATGGTACTGC
TCGTTATCGAAGCGTTCCTGATCGTCCCCGACCGAGATGCGTCCGTGGCC
CTCGTCCTGCTCCCACATGGAGCGTCGCTTGTTCTTCTTGTACACATCCG
CTTTCTCCCGCTCCCTGAGTATCTGATCGTCTGGCAGGTATTGGCTGCCC
ACTCTGGGCCGCTGGGAACGCCTGGCAATGTGACGCGTTGAGGCGCATTC
GATCCGCGCACGGAGGAGCTCGATGCAACGGTTCACCATCATCCGAGTGC
CACCGTGGATGTTAACCATGTCGACTGATAACT
BS06412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-PA | 603 | CG5762-RA | 1..603 | 619..17 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-RA | 921 | CG5762-RA | 133..736 | 619..16 | 3020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24361137..24361551 | 205..619 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 24360890..24361082 | 16..208 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:26:55 has no hits.
BS06412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:09 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:01 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:43 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 126..743 | 7..628 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:45 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 126..743 | 7..628 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:45 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24360881..24361079 | 7..205 | 98 | <- | Plus |
3R | 24361138..24361558 | 206..628 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:43 Download gff for
BS06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20186603..20186801 | 7..205 | 98 | <- | Plus |
arm_3R | 20186860..20187280 | 206..628 | 99 | | Plus |
BS06412.5prime Sequence
633 bp (632 high quality bases) assembled on 2005-12-03
> BS06412.5prime
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCTAAAAGCTTTCTAGACC
BS06412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-PA | 603 | CG5762-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-RA | 921 | CG5762-RA | 133..736 | 17..620 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24361137..24361551 | 431..17 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 24360890..24361082 | 620..428 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:37:07 has no hits.
BS06412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:10 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:02 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:16 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 126..743 | 8..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:58 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 126..743 | 8..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:58 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24360881..24361079 | 431..629 | 98 | <- | Minus |
3R | 24361138..24361558 | 8..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:16 Download gff for
BS06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20186603..20186801 | 431..629 | 98 | <- | Minus |
arm_3R | 20186860..20187280 | 8..430 | 99 | | Minus |
BS06412.complete Sequence
635 bp (635 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635482
> BS06412.complete
GAAGTTATCAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGG
TGAACCGTTGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACG
CGTCACATTGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCT
GCCAGACGATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGA
AGAACAAGCGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATC
TCGGTCGGGGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCG
CGAACTGGAGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACA
GTGTGGCGACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAA
ACTGAGGCTCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGC
AAAGCCATGTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCA
ATGCGGCGATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGT
CCACCACCCATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAA
ACGTCAGTTCTTATTCTAAAAGCTTTCTAGACCAT
BS06412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-RA | 603 | CG5762-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-RA | 921 | CG5762-RA | 133..736 | 17..620 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24361137..24361551 | 431..17 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 24360890..24361082 | 620..428 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:33:09 has no hits.
BS06412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:26 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:48 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 132..749 | 8..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:43 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 133..733 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:27 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 132..749 | 8..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:06 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5762-RA | 133..733 | 17..617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:06 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24360893..24361079 | 431..617 | 100 | <- | Minus |
3R | 24361138..24361551 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:43 Download gff for
BS06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20186615..20186801 | 431..617 | 100 | <- | Minus |
arm_3R | 20186860..20187273 | 17..430 | 100 | | Minus |
BS06412.pep Sequence
Translation from 16 to 618
> BS06412.pep
MVNIHGGTRMMVNRCIELLRARIECASTRHIARRSQRPRVGSQYLPDDQI
LREREKADVYKKNKRRSMWEQDEGHGRISVGDDQERFDNEQYHPRELEKR
KYECTWVNFPDSVATKRNRRRDFLESMETEAPRRRRAQEERPSTAKPCDD
EARAFINQWDTNAAMIQRNKFARATDSCPPPIVSLRLSNAYSTRKRQFLF
*
BS06412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5762-PA | 200 | CG5762-PA | 1..200 | 1..200 | 1063 | 100 | Plus |