Clone Sequence Records
BS06415.3prime Sequence
843 bp (804 high quality bases) assembled on 2005-12-03
> BS06415.3prime
ATGGTCTAGAAAGCTTTTAGATACCGGAAGTTTCCTTGATCCAATCGCGA
TAGTAAGTGATACGGGTGAAAGCAGCTGGTGCGCCAGACTCGCAACCATC
AGCGGATCCAAAGGAGGTGGCACCGATGAGGACACCATCGAGAGCCAATG
GGCCGCCGGAATCACCCTGGCAGGTGGAGGCCTTGTTGGTGGTGTCAACG
CAGAGGACCCTGCTGGTCACGATCAGGCTTCCGAAGGTTTCCTGGCATTT
GGAGTTGGAGATGATGGTAAGGTCCACGTACTGCAGATCGCGAGACACGG
CGGTGGCTTGGTCGGAGGTGAGACCCCATCCGGAGGCAACAGCGGTCTTT
CCCTCGTAGGTGGAGTAGCTGTTGGAGACGGCGGGCAGGCTGATCTTGTT
CACGGTAGCCGAGAAGGACACGGACGAAGTCTGGATCAGGGAGATGTCGT
TGCGGATGGTCAAAGCCAGGTAGCTTTCGTGCTGCCTAAACTTTGAGCTG
CTGACGACTTGGGTGAACTCGGGGCTAGTACGGACAGTGGCACCGTAGTA
GATGGTCACGGAGGCGGCACCGTCGGTACAGTGAGCAGCAGTCAGCACCC
ACTCGTTTCCGATGATGGAGCCACCGCACCACCAACTGCCAGCAGAGCTG
GAGAAACTAAGTCCCACCTGGTAGGGGAACTGGCCGGCAACGGCGTCCTT
GCCGTTGGTGATGCGACCGGTGATGGATGGGGTCGAGACCCTGTCACGGG
GATGTACAGGGGCAATATTGGGCAGGAGCCCAGCGGAGGCGGAGGCCAGA
GCCAGAACCAAAACTACGAAAACCTTCATGTCGACTGATAACT
BS06415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6457-PA | 813 | yip7-RA | 1..813 | 829..17 | 4065 | 100 | Minus |
CG6467-PA | 816 | Jon65Aiv-RA | 138..165 | 686..659 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 27..840 | 830..17 | 4070 | 100 | Minus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 718..324 | 475 | 75.3 | Minus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 718..324 | 475 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036111 | 570..17 | 2770 | 100 | Minus |
3L | 28110227 | 3L | 6035242..6035502 | 830..570 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 6050888..6051027 | 718..579 | 355 | 83.6 | Minus |
2L | 23513712 | 2L | 4954803..4954940 | 497..634 | 270 | 79.7 | Plus |
3L | 28110227 | 3L | 6034048..6034178 | 324..454 | 265 | 80.2 | Plus |
3L | 28110227 | 3L | 6034351..6034494 | 575..718 | 240 | 77.8 | Plus |
2L | 23513712 | 2L | 4950474..4950571 | 537..634 | 220 | 81.6 | Plus |
2L | 23513712 | 2L | 4952816..4952910 | 540..634 | 220 | 82.1 | Plus |
3R | 32079331 | 3R | 29922422..29922518 | 634..538 | 200 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:34:57 has no hits.
BS06415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:15 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:09 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6457-PA | 1..813 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:29 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..845 | 11..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:31 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..845 | 11..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:31 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035236..6035502 | 570..837 | 98 | -> | Minus |
3L | 6035559..6036116 | 11..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:29 Download gff for
BS06415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028336..6028602 | 570..837 | 98 | -> | Minus |
arm_3L | 6028659..6029216 | 11..569 | 99 | | Minus |
BS06415.5prime Sequence
843 bp (801 high quality bases) assembled on 2005-12-03
> BS06415.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCTAAAAGCTTTCTAGACC
BS06415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6457-PA | 813 | yip7-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG6467-PA | 816 | Jon65Aiv-RA | 138..165 | 160..187 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 27..840 | 16..829 | 4070 | 100 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 128..522 | 475 | 75.3 | Plus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 128..522 | 475 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036111 | 276..829 | 2770 | 100 | Plus |
3L | 28110227 | 3L | 6035242..6035502 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6050888..6051027 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954803..4954940 | 349..212 | 270 | 79.7 | Minus |
3L | 28110227 | 3L | 6034048..6034178 | 522..392 | 265 | 80.2 | Minus |
3L | 28110227 | 3L | 6034351..6034494 | 271..128 | 240 | 77.8 | Minus |
2L | 23513712 | 2L | 4950474..4950571 | 309..212 | 220 | 81.6 | Minus |
2L | 23513712 | 2L | 4952816..4952910 | 306..212 | 220 | 82.1 | Minus |
3R | 32079331 | 3R | 29922422..29922518 | 212..308 | 200 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:54:11 has no hits.
BS06415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:16 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:11 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6457-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:53 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..845 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:25:54 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..845 | 9..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:25:54 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035236..6035502 | 9..276 | 98 | -> | Plus |
3L | 6035559..6036116 | 277..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:53 Download gff for
BS06415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028336..6028602 | 9..276 | 98 | -> | Plus |
arm_3L | 6028659..6029216 | 277..835 | 99 | | Plus |
BS06415.complete Sequence
845 bp (845 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635483
> BS06415.complete
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCTAAAAGCTTTCTAGACCAT
BS06415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 813 | CG6457-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG10477-RB | 819 | CG10477-PB | 112..506 | 128..522 | 475 | 74.7 | Plus |
CG10477-RA | 819 | CG10477-PA | 112..506 | 128..522 | 475 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 27..840 | 16..829 | 4070 | 100 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 128..522 | 475 | 74.7 | Plus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 128..522 | 475 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036111 | 276..829 | 2770 | 100 | Plus |
3L | 28110227 | 3L | 6035242..6035502 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6050888..6051027 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954803..4954940 | 349..212 | 270 | 79.7 | Minus |
3L | 28110227 | 3L | 6034048..6034178 | 522..392 | 265 | 80.2 | Minus |
3L | 28110227 | 3L | 6034351..6034494 | 271..128 | 240 | 77.8 | Minus |
2L | 23513712 | 2L | 4950474..4950571 | 309..212 | 220 | 81.6 | Minus |
2L | 23513712 | 2L | 4952816..4952910 | 306..212 | 220 | 82.1 | Minus |
3R | 32079331 | 3R | 29922422..29922518 | 212..308 | 200 | 80.4 | Plus |
3R | 32079331 | 3R | 30489174..30489270 | 212..308 | 200 | 80.4 | Plus |
3R | 32079331 | 3R | 29924311..29924407 | 308..212 | 185 | 79.4 | Minus |
3R | 32079331 | 3R | 30487621..30487717 | 308..212 | 185 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:30 has no hits.
BS06415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:28 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:50 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 7..831 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:59 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 28..838 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:28 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 7..831 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:07 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 28..838 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:07 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035243..6035502 | 17..276 | 100 | -> | Plus |
3L | 6035559..6036109 | 277..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:59 Download gff for
BS06415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028343..6028602 | 17..276 | 100 | -> | Plus |
arm_3L | 6028659..6029209 | 277..827 | 100 | | Plus |
BS06415.pep Sequence
Translation from 16 to 828
> BS06415.pep
MKVFVVLVLALASASAGLLPNIAPVHPRDRVSTPSITGRITNGKDAVAGQ
FPYQVGLSFSSSAGSWWCGGSIIGNEWVLTAAHCTDGAASVTIYYGATVR
TSPEFTQVVSSSKFRQHESYLALTIRNDISLIQTSSVSFSATVNKISLPA
VSNSYSTYEGKTAVASGWGLTSDQATAVSRDLQYVDLTIISNSKCQETFG
SLIVTSRVLCVDTTNKASTCQGDSGGPLALDGVLIGATSFGSADGCESGA
PAAFTRITYYRDWIKETSGI*
BS06415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-PA | 270 | CG6457-PA | 1..270 | 1..270 | 1378 | 100 | Plus |
CG10477-PB | 272 | CG10477-PB | 1..270 | 1..270 | 950 | 66.7 | Plus |
CG10477-PA | 272 | CG10477-PA | 1..270 | 1..270 | 950 | 66.7 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 1..272 | 1..270 | 922 | 63.2 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..270 | 736 | 55.3 | Plus |