Clone BS06415 Report

Search the DGRC for BS06415

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptyip7-RA
Protein status:BS06415.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06415.3prime Sequence

843 bp (804 high quality bases) assembled on 2005-12-03

> BS06415.3prime
ATGGTCTAGAAAGCTTTTAGATACCGGAAGTTTCCTTGATCCAATCGCGA
TAGTAAGTGATACGGGTGAAAGCAGCTGGTGCGCCAGACTCGCAACCATC
AGCGGATCCAAAGGAGGTGGCACCGATGAGGACACCATCGAGAGCCAATG
GGCCGCCGGAATCACCCTGGCAGGTGGAGGCCTTGTTGGTGGTGTCAACG
CAGAGGACCCTGCTGGTCACGATCAGGCTTCCGAAGGTTTCCTGGCATTT
GGAGTTGGAGATGATGGTAAGGTCCACGTACTGCAGATCGCGAGACACGG
CGGTGGCTTGGTCGGAGGTGAGACCCCATCCGGAGGCAACAGCGGTCTTT
CCCTCGTAGGTGGAGTAGCTGTTGGAGACGGCGGGCAGGCTGATCTTGTT
CACGGTAGCCGAGAAGGACACGGACGAAGTCTGGATCAGGGAGATGTCGT
TGCGGATGGTCAAAGCCAGGTAGCTTTCGTGCTGCCTAAACTTTGAGCTG
CTGACGACTTGGGTGAACTCGGGGCTAGTACGGACAGTGGCACCGTAGTA
GATGGTCACGGAGGCGGCACCGTCGGTACAGTGAGCAGCAGTCAGCACCC
ACTCGTTTCCGATGATGGAGCCACCGCACCACCAACTGCCAGCAGAGCTG
GAGAAACTAAGTCCCACCTGGTAGGGGAACTGGCCGGCAACGGCGTCCTT
GCCGTTGGTGATGCGACCGGTGATGGATGGGGTCGAGACCCTGTCACGGG
GATGTACAGGGGCAATATTGGGCAGGAGCCCAGCGGAGGCGGAGGCCAGA
GCCAGAACCAAAACTACGAAAACCTTCATGTCGACTGATAACT

BS06415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6457-PA 813 yip7-RA 1..813 829..17 4065 100 Minus
CG6467-PA 816 Jon65Aiv-RA 138..165 686..659 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
yip7-RA 904 CG6457-RA 27..840 830..17 4070 100 Minus
CG10477-RB 1039 CG10477-RB 118..512 718..324 475 75.3 Minus
CG10477-RA 1361 CG10477-RA 118..512 718..324 475 75.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6035558..6036111 570..17 2770 100 Minus
3L 28110227 3L 6035242..6035502 830..570 1305 100 Minus
3L 28110227 3L 6050888..6051027 718..579 355 83.6 Minus
2L 23513712 2L 4954803..4954940 497..634 270 79.7 Plus
3L 28110227 3L 6034048..6034178 324..454 265 80.2 Plus
3L 28110227 3L 6034351..6034494 575..718 240 77.8 Plus
2L 23513712 2L 4950474..4950571 537..634 220 81.6 Plus
2L 23513712 2L 4952816..4952910 540..634 220 82.1 Plus
3R 32079331 3R 29922422..29922518 634..538 200 80.4 Minus
Blast to na_te.dros performed on 2015-02-01 08:34:57 has no hits.

BS06415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:15 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
yip7-PA 1..813 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:09 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6457-PA 1..813 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:29 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 21..845 11..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:31 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 21..845 11..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:31 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6035236..6035502 570..837 98 -> Minus
3L 6035559..6036116 11..569 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:29 Download gff for BS06415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6028336..6028602 570..837 98 -> Minus
arm_3L 6028659..6029216 11..569 99   Minus

BS06415.5prime Sequence

843 bp (801 high quality bases) assembled on 2005-12-03

> BS06415.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCTAAAAGCTTTCTAGACC

BS06415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6457-PA 813 yip7-RA 1..813 17..829 4065 100 Plus
CG6467-PA 816 Jon65Aiv-RA 138..165 160..187 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
yip7-RA 904 CG6457-RA 27..840 16..829 4070 100 Plus
CG10477-RB 1039 CG10477-RB 118..512 128..522 475 75.3 Plus
CG10477-RA 1361 CG10477-RA 118..512 128..522 475 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6035558..6036111 276..829 2770 100 Plus
3L 28110227 3L 6035242..6035502 16..276 1305 100 Plus
3L 28110227 3L 6050888..6051027 128..267 355 83.6 Plus
2L 23513712 2L 4954803..4954940 349..212 270 79.7 Minus
3L 28110227 3L 6034048..6034178 522..392 265 80.2 Minus
3L 28110227 3L 6034351..6034494 271..128 240 77.8 Minus
2L 23513712 2L 4950474..4950571 309..212 220 81.6 Minus
2L 23513712 2L 4952816..4952910 306..212 220 82.1 Minus
3R 32079331 3R 29922422..29922518 212..308 200 80.4 Plus
Blast to na_te.dros performed on 2015-02-12 00:54:11 has no hits.

BS06415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:16 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
yip7-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:11 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6457-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:53 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 21..845 9..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:25:54 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 21..845 9..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:25:54 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6035236..6035502 9..276 98 -> Plus
3L 6035559..6036116 277..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:53 Download gff for BS06415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6028336..6028602 9..276 98 -> Plus
arm_3L 6028659..6029216 277..835 99   Plus

BS06415.complete Sequence

845 bp (845 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635483

> BS06415.complete
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCTAAAAGCTTTCTAGACCAT

BS06415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
yip7-RA 813 CG6457-PA 1..813 17..829 4065 100 Plus
CG10477-RB 819 CG10477-PB 112..506 128..522 475 74.7 Plus
CG10477-RA 819 CG10477-PA 112..506 128..522 475 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
yip7-RA 904 CG6457-RA 27..840 16..829 4070 100 Plus
CG10477-RB 1039 CG10477-RB 118..512 128..522 475 74.7 Plus
CG10477-RA 1361 CG10477-RA 118..512 128..522 475 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6035558..6036111 276..829 2770 100 Plus
3L 28110227 3L 6035242..6035502 16..276 1305 100 Plus
3L 28110227 3L 6050888..6051027 128..267 355 83.6 Plus
2L 23513712 2L 4954803..4954940 349..212 270 79.7 Minus
3L 28110227 3L 6034048..6034178 522..392 265 80.2 Minus
3L 28110227 3L 6034351..6034494 271..128 240 77.8 Minus
2L 23513712 2L 4950474..4950571 309..212 220 81.6 Minus
2L 23513712 2L 4952816..4952910 306..212 220 82.1 Minus
3R 32079331 3R 29922422..29922518 212..308 200 80.4 Plus
3R 32079331 3R 30489174..30489270 212..308 200 80.4 Plus
3R 32079331 3R 29924311..29924407 308..212 185 79.4 Minus
3R 32079331 3R 30487621..30487717 308..212 185 79.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:30:30 has no hits.

BS06415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:28 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:50 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 7..831 9..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:59 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 28..838 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:28 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 7..831 9..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:07 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
yip7-RA 28..838 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:07 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6035243..6035502 17..276 100 -> Plus
3L 6035559..6036109 277..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:59 Download gff for BS06415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6028343..6028602 17..276 100 -> Plus
arm_3L 6028659..6029209 277..827 100   Plus

BS06415.pep Sequence

Translation from 16 to 828

> BS06415.pep
MKVFVVLVLALASASAGLLPNIAPVHPRDRVSTPSITGRITNGKDAVAGQ
FPYQVGLSFSSSAGSWWCGGSIIGNEWVLTAAHCTDGAASVTIYYGATVR
TSPEFTQVVSSSKFRQHESYLALTIRNDISLIQTSSVSFSATVNKISLPA
VSNSYSTYEGKTAVASGWGLTSDQATAVSRDLQYVDLTIISNSKCQETFG
SLIVTSRVLCVDTTNKASTCQGDSGGPLALDGVLIGATSFGSADGCESGA
PAAFTRITYYRDWIKETSGI*

BS06415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
yip7-PA 270 CG6457-PA 1..270 1..270 1378 100 Plus
CG10477-PB 272 CG10477-PB 1..270 1..270 950 66.7 Plus
CG10477-PA 272 CG10477-PA 1..270 1..270 950 66.7 Plus
Jon65Aiii-PA 274 CG6483-PA 1..272 1..270 922 63.2 Plus
Jon65Aiv-PA 271 CG6467-PA 1..271 1..270 736 55.3 Plus