Clone BS06418 Report

Search the DGRC for BS06418

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG5703-RA
Protein status:BS06418.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06418.3prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06418.3prime
ATGGTCTAGAAAGCTTCTACAGACCGGCCTGCAGACCAAAGCCAGGACCC
TTGGGCTCCTCGCTCAGGGAAGTGGGCTCGCCCTTTGGCTCGCTGGCAAA
GCGTCCGTTGCGTGGCCCAGGGGGCGATATCTTATCCGCCTTCAGGTCGT
TCAGGATGTCCTGCATGTCCTTGGATGTCAGATCCTCATAGTAGTCATCG
TTGATCGCCACCATTGGCGCATTGACACAGGCGCCCAAGCACTCGACCTC
CGAGATGGTGAACTTCCTGTCCTTGGTGGTGTCGCCGACGCCGATGCCCA
GCTGCTTCTTGCAGGTCTCCAGGATGTCGTCCGATCCGCGGAGCCAGCAT
GGTGTGGTGGTGCACACCTGGATGTGATACTTGCCAGTGGGCTTGCGCAT
GAACATCGTATAGAAAGTGGCCACCTCGTAGACGCGCATATTGGGCAACT
GGAGAATCTCGGCCACCTTGTGCATGGCAGAGATTGGCAGCCAGCCGTAC
TGGCGCTGTGCCAGATCAAGCAGCGGGATCATGGCGCCGCGCTTGTGCCC
CTCCGGATAGATGCTGAGTATGGCCTCCACGCGCTTCTTGTTCTCCGCCG
TGAACTCGAACGGGATGTTGGGATTATCCTCCGGTGTGTCGCGATGGACG
AACAGATTGTCGCTGGCCCGGGCACTGCTGGTGGCAATTGCCCGGATGTT
GGCGCGCACGGCGGCCAGTGTTTTGGAGGCACAGTTTGTCAGCATGTCGA
CTGATAACT

BS06418.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PA 729 CG5703-RA 1..729 745..17 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..831 745..16 3650 100 Minus
CG5703-RA 1064 CG5703-RA 260..989 745..16 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 707..187 2605 100 Minus
X 23542271 X 17633263..17633434 187..16 860 100 Minus
X 23542271 X 17632422..17632460 745..707 195 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:26:42 has no hits.

BS06418.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:19 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:15 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..745 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:41 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 16..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:42 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 16..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:42 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17632420..17632460 707..748 97 -> Minus
X 17632590..17633108 188..706 100 -> Minus
X 17633263..17633434 16..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:41 Download gff for BS06418.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526453..17526493 707..748 97 -> Minus
arm_X 17526623..17527141 188..706 100 -> Minus
arm_X 17527296..17527467 16..187 100   Minus

BS06418.5prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-03

> BS06418.5prime
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGTAGAAGCT
TTCTAGACC

BS06418.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PA 729 CG5703-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..831 17..746 3650 100 Plus
CG5703-RA 1064 CG5703-RA 260..989 17..746 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 55..575 2605 100 Plus
X 23542271 X 17633263..17633434 575..746 860 100 Plus
X 23542271 X 17632422..17632460 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:05:40 has no hits.

BS06418.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:20 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:17 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:05 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 14..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:27 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 14..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:27 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17633263..17633434 575..746 100   Plus
X 17632420..17632460 14..55 97 -> Plus
X 17632590..17633108 56..574 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:05 Download gff for BS06418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526453..17526493 14..55 97 -> Plus
arm_X 17526623..17527141 56..574 100 -> Plus
arm_X 17527296..17527467 575..746 100   Plus

BS06418.complete Sequence

761 bp (761 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635484

> BS06418.complete
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGTAGAAGCT
TTCTAGACCAT

BS06418.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 729 CG5703-PB 1..729 17..745 3645 100 Plus
CG5703-RA 729 CG5703-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..831 17..746 3650 100 Plus
CG5703-RA 1064 CG5703-RA 260..989 17..746 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 55..575 2605 100 Plus
X 23542271 X 17633263..17633434 575..746 860 100 Plus
X 23542271 X 17632422..17632460 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:03 has no hits.

BS06418.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:32 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:43 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 14..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:51 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 260..988 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:32 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..989 14..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:47 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 260..988 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:47 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
X 17632422..17632460 17..55 100 -> Plus
X 17632590..17633108 56..574 100 -> Plus
X 17633263..17633433 575..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:51 Download gff for BS06418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526455..17526493 17..55 100 -> Plus
arm_X 17526623..17527141 56..574 100 -> Plus
arm_X 17527296..17527466 575..745 100   Plus

BS06418.pep Sequence

Translation from 16 to 744

> BS06418.pep
MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTA
ENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQL
PNMRVYEVATFYTMFMRKPTGKYHIQVCTTTPCWLRGSDDILETCKKQLG
IGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILND
LKADKISPPGPRNGRFASEPKGEPTSLSEEPKGPGFGLQAGL*

BS06418.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PB 242 CG5703-PB 1..242 1..242 1276 100 Plus
CG5703-PA 242 CG5703-PA 1..242 1..242 1276 100 Plus
CG6485-PA 238 CG6485-PA 32..227 44..239 600 55.6 Plus