Clone Sequence Records
BS06418.3prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06418.3prime
ATGGTCTAGAAAGCTTCTACAGACCGGCCTGCAGACCAAAGCCAGGACCC
TTGGGCTCCTCGCTCAGGGAAGTGGGCTCGCCCTTTGGCTCGCTGGCAAA
GCGTCCGTTGCGTGGCCCAGGGGGCGATATCTTATCCGCCTTCAGGTCGT
TCAGGATGTCCTGCATGTCCTTGGATGTCAGATCCTCATAGTAGTCATCG
TTGATCGCCACCATTGGCGCATTGACACAGGCGCCCAAGCACTCGACCTC
CGAGATGGTGAACTTCCTGTCCTTGGTGGTGTCGCCGACGCCGATGCCCA
GCTGCTTCTTGCAGGTCTCCAGGATGTCGTCCGATCCGCGGAGCCAGCAT
GGTGTGGTGGTGCACACCTGGATGTGATACTTGCCAGTGGGCTTGCGCAT
GAACATCGTATAGAAAGTGGCCACCTCGTAGACGCGCATATTGGGCAACT
GGAGAATCTCGGCCACCTTGTGCATGGCAGAGATTGGCAGCCAGCCGTAC
TGGCGCTGTGCCAGATCAAGCAGCGGGATCATGGCGCCGCGCTTGTGCCC
CTCCGGATAGATGCTGAGTATGGCCTCCACGCGCTTCTTGTTCTCCGCCG
TGAACTCGAACGGGATGTTGGGATTATCCTCCGGTGTGTCGCGATGGACG
AACAGATTGTCGCTGGCCCGGGCACTGCTGGTGGCAATTGCCCGGATGTT
GGCGCGCACGGCGGCCAGTGTTTTGGAGGCACAGTTTGTCAGCATGTCGA
CTGATAACT
BS06418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PA | 729 | CG5703-RA | 1..729 | 745..17 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..831 | 745..16 | 3650 | 100 | Minus |
CG5703-RA | 1064 | CG5703-RA | 260..989 | 745..16 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 707..187 | 2605 | 100 | Minus |
X | 23542271 | X | 17633263..17633434 | 187..16 | 860 | 100 | Minus |
X | 23542271 | X | 17632422..17632460 | 745..707 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:26:42 has no hits.
BS06418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:19 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:15 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..745 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:41 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 16..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:42 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 16..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:42 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17632420..17632460 | 707..748 | 97 | -> | Minus |
X | 17632590..17633108 | 188..706 | 100 | -> | Minus |
X | 17633263..17633434 | 16..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:41 Download gff for
BS06418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526453..17526493 | 707..748 | 97 | -> | Minus |
arm_X | 17526623..17527141 | 188..706 | 100 | -> | Minus |
arm_X | 17527296..17527467 | 16..187 | 100 | | Minus |
BS06418.5prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-03
> BS06418.5prime
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGTAGAAGCT
TTCTAGACC
BS06418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PA | 729 | CG5703-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..831 | 17..746 | 3650 | 100 | Plus |
CG5703-RA | 1064 | CG5703-RA | 260..989 | 17..746 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 55..575 | 2605 | 100 | Plus |
X | 23542271 | X | 17633263..17633434 | 575..746 | 860 | 100 | Plus |
X | 23542271 | X | 17632422..17632460 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:05:40 has no hits.
BS06418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:20 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:17 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:05 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 14..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:27 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 14..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:27 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17633263..17633434 | 575..746 | 100 | | Plus |
X | 17632420..17632460 | 14..55 | 97 | -> | Plus |
X | 17632590..17633108 | 56..574 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:05 Download gff for
BS06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526453..17526493 | 14..55 | 97 | -> | Plus |
arm_X | 17526623..17527141 | 56..574 | 100 | -> | Plus |
arm_X | 17527296..17527467 | 575..746 | 100 | | Plus |
BS06418.complete Sequence
761 bp (761 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635484
> BS06418.complete
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGTAGAAGCT
TTCTAGACCAT
BS06418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 729 | CG5703-PB | 1..729 | 17..745 | 3645 | 100 | Plus |
CG5703-RA | 729 | CG5703-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..831 | 17..746 | 3650 | 100 | Plus |
CG5703-RA | 1064 | CG5703-RA | 260..989 | 17..746 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 55..575 | 2605 | 100 | Plus |
X | 23542271 | X | 17633263..17633434 | 575..746 | 860 | 100 | Plus |
X | 23542271 | X | 17632422..17632460 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:03 has no hits.
BS06418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:32 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:43 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 14..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:51 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 260..988 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:32 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..989 | 14..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:47 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 260..988 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:47 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17632422..17632460 | 17..55 | 100 | -> | Plus |
X | 17632590..17633108 | 56..574 | 100 | -> | Plus |
X | 17633263..17633433 | 575..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:51 Download gff for
BS06418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526455..17526493 | 17..55 | 100 | -> | Plus |
arm_X | 17526623..17527141 | 56..574 | 100 | -> | Plus |
arm_X | 17527296..17527466 | 575..745 | 100 | | Plus |
BS06418.pep Sequence
Translation from 16 to 744
> BS06418.pep
MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTA
ENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQL
PNMRVYEVATFYTMFMRKPTGKYHIQVCTTTPCWLRGSDDILETCKKQLG
IGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILND
LKADKISPPGPRNGRFASEPKGEPTSLSEEPKGPGFGLQAGL*
BS06418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PB | 242 | CG5703-PB | 1..242 | 1..242 | 1276 | 100 | Plus |
CG5703-PA | 242 | CG5703-PA | 1..242 | 1..242 | 1276 | 100 | Plus |
CG6485-PA | 238 | CG6485-PA | 32..227 | 44..239 | 600 | 55.6 | Plus |