Clone BS06419 Report

Search the DGRC for BS06419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCpr57A-RA
Protein status:BS06419.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06419.3prime Sequence

585 bp (584 high quality bases) assembled on 2005-12-03

> BS06419.3prime
ATGGTCTAGAAAGCTTCTACGGATGGTACTGTCCATCTTCGATCTCTCCA
TGCTCAGATTGAGCGGCCAGCGCCAGACGCTGTGCCTCCTGTTGGCGTCC
AATGGCCGCGTGCTCGGCAGCGATCCGCTCGAAGGCGCTCAGGTGCTTCT
GGGTGGCATGTGCAACGGCGGCGCTGGCATGGGGGGCATTTGCTAGTGCA
ACTTGGCCTGGCGTGTGGTTGGCATGCTCTTGCGCAATCCGATTGTAGGC
CGCGAAGTGCCTTTGCTTGGCTGCCTGGACGGCGGCGCTGTCCTCCAGTT
TGTGGCTAAGCTGAGGATGGAAACCATGCTCATCCGCCACATACTGTACG
GTGCGCACCTGGTTCTTTGGGTCCACATAGGAGAAAGCACCGCGGATCAC
ACCCGATCCATCGGACACCTCGGTATGCTGGCGATCCACATGGCCGGGAG
CACGGCCAGCTTGGTAGCTGAACACATACGGACTTGCTGGAACCTTCGGT
TCCGGGGTGACCAGATGGGACACATCGGCCGCAGCGACTGCCAGCAAACA
AACGACCAAAACTATAAACATGTCGACTGATAACT

BS06419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18066-PA 555 CG18066-RA 1..555 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..605 572..17 2780 100 Minus
Cpr57A-RB 1488 CG18066-RB 50..605 572..17 2780 100 Minus
Cpr57A-RA 656 CG18066-RA 50..605 572..17 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 199..557 1795 100 Plus
2R 25286936 2R 20549379..20549561 17..199 915 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:00:48 has no hits.

BS06419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:21 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:19 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:52 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..605 17..579 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:27 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..605 17..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:27 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20549379..20549561 17..199 100 <- Plus
2R 20549632..20549988 200..556 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:52 Download gff for BS06419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436884..16437066 17..199 100 <- Plus
arm_2R 16437137..16437493 200..556 100 <- Plus

BS06419.5prime Sequence

585 bp (584 high quality bases) assembled on 2005-12-03

> BS06419.5prime
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGTAGAAGCTTTCTAGACC

BS06419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18066-PA 555 CG18066-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..605 16..571 2780 100 Plus
Cpr57A-RB 1488 CG18066-RB 50..605 16..571 2780 100 Plus
Cpr57A-RA 656 CG18066-RA 50..605 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 389..31 1795 100 Minus
2R 25286936 2R 20549379..20549561 571..389 915 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:39:25 has no hits.

BS06419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:22 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:20 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18066-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:39 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..605 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:14 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 43..605 9..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:14 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20549379..20549561 389..571 100 <- Minus
2R 20549632..20549988 32..388 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:39 Download gff for BS06419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436884..16437066 389..571 100 <- Minus
arm_2R 16437137..16437493 32..388 100 <- Minus

BS06419.complete Sequence

587 bp (587 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635485

> BS06419.complete
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGTAGAAGCTTTCTAGACCAT

BS06419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr57A-RB 555 CG18066-PB 1..555 17..571 2775 100 Plus
Cpr57A-RA 555 CG18066-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57d-RB 1488 CG30150-RB 50..605 16..571 2780 100 Plus
Cpr57A-RB 1488 CG18066-RB 50..605 16..571 2780 100 Plus
Cpr57A-RA 656 CG18066-RA 50..605 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20549631..20549989 389..31 1795 100 Minus
2R 25286936 2R 20549379..20549561 571..389 915 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:47:50 has no hits.

BS06419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:33 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RB 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:59 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57d-RB 18..580 9..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:15 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 57..605 23..571 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:34 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57d-RB 18..580 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:05 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr57A-RA 57..605 23..571 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:05 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20549379..20549561 389..571 100 <- Minus
2R 20549632..20549996 23..388 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:15 Download gff for BS06419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16436884..16437066 389..571 100 <- Minus
arm_2R 16437137..16437501 23..388 98   Minus

BS06419.pep Sequence

Translation from 16 to 570

> BS06419.pep
MFIVLVVCLLAVAAADVSHLVTPEPKVPASPYVFSYQAGRAPGHVDRQHT
EVSDGSGVIRGAFSYVDPKNQVRTVQYVADEHGFHPQLSHKLEDSAAVQA
AKQRHFAAYNRIAQEHANHTPGQVALANAPHASAAVAHATQKHLSAFERI
AAEHAAIGRQQEAQRLALAAQSEHGEIEDGQYHP*

BS06419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr57A-PB 184 CG18066-PB 1..184 1..184 949 100 Plus
Cpr57A-PA 184 CG18066-PA 1..184 1..184 949 100 Plus