Clone Sequence Records
BS06419.3prime Sequence
585 bp (584 high quality bases) assembled on 2005-12-03
> BS06419.3prime
ATGGTCTAGAAAGCTTCTACGGATGGTACTGTCCATCTTCGATCTCTCCA
TGCTCAGATTGAGCGGCCAGCGCCAGACGCTGTGCCTCCTGTTGGCGTCC
AATGGCCGCGTGCTCGGCAGCGATCCGCTCGAAGGCGCTCAGGTGCTTCT
GGGTGGCATGTGCAACGGCGGCGCTGGCATGGGGGGCATTTGCTAGTGCA
ACTTGGCCTGGCGTGTGGTTGGCATGCTCTTGCGCAATCCGATTGTAGGC
CGCGAAGTGCCTTTGCTTGGCTGCCTGGACGGCGGCGCTGTCCTCCAGTT
TGTGGCTAAGCTGAGGATGGAAACCATGCTCATCCGCCACATACTGTACG
GTGCGCACCTGGTTCTTTGGGTCCACATAGGAGAAAGCACCGCGGATCAC
ACCCGATCCATCGGACACCTCGGTATGCTGGCGATCCACATGGCCGGGAG
CACGGCCAGCTTGGTAGCTGAACACATACGGACTTGCTGGAACCTTCGGT
TCCGGGGTGACCAGATGGGACACATCGGCCGCAGCGACTGCCAGCAAACA
AACGACCAAAACTATAAACATGTCGACTGATAACT
BS06419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18066-PA | 555 | CG18066-RA | 1..555 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp57d-RB | 1488 | CG30150-RB | 50..605 | 572..17 | 2780 | 100 | Minus |
Cpr57A-RB | 1488 | CG18066-RB | 50..605 | 572..17 | 2780 | 100 | Minus |
Cpr57A-RA | 656 | CG18066-RA | 50..605 | 572..17 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20549631..20549989 | 199..557 | 1795 | 100 | Plus |
2R | 25286936 | 2R | 20549379..20549561 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:00:48 has no hits.
BS06419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:21 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18066-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:19 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18066-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:52 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 43..605 | 17..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:27 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 43..605 | 17..579 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:27 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20549379..20549561 | 17..199 | 100 | <- | Plus |
2R | 20549632..20549988 | 200..556 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:52 Download gff for
BS06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16436884..16437066 | 17..199 | 100 | <- | Plus |
arm_2R | 16437137..16437493 | 200..556 | 100 | <- | Plus |
BS06419.5prime Sequence
585 bp (584 high quality bases) assembled on 2005-12-03
> BS06419.5prime
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGTAGAAGCTTTCTAGACC
BS06419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18066-PA | 555 | CG18066-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp57d-RB | 1488 | CG30150-RB | 50..605 | 16..571 | 2780 | 100 | Plus |
Cpr57A-RB | 1488 | CG18066-RB | 50..605 | 16..571 | 2780 | 100 | Plus |
Cpr57A-RA | 656 | CG18066-RA | 50..605 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20549631..20549989 | 389..31 | 1795 | 100 | Minus |
2R | 25286936 | 2R | 20549379..20549561 | 571..389 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:39:25 has no hits.
BS06419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:22 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18066-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:20 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18066-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:39 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 43..605 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:14 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 43..605 | 9..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:14 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20549379..20549561 | 389..571 | 100 | <- | Minus |
2R | 20549632..20549988 | 32..388 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:39 Download gff for
BS06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16436884..16437066 | 389..571 | 100 | <- | Minus |
arm_2R | 16437137..16437493 | 32..388 | 100 | <- | Minus |
BS06419.complete Sequence
587 bp (587 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635485
> BS06419.complete
GAAGTTATCAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAG
TCGCTGCGGCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCA
GCAAGTCCGTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGT
GGATCGCCAGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTG
CTTTCTCCTATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTG
GCGGATGAGCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAG
CGCCGCCGTCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGA
TTGCGCAAGAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAAT
GCCCCCCATGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAG
CGCCTTCGAGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGG
AGGCACAGCGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAA
GATGGACAGTACCATCCGTAGAAGCTTTCTAGACCAT
BS06419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr57A-RB | 555 | CG18066-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
Cpr57A-RA | 555 | CG18066-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp57d-RB | 1488 | CG30150-RB | 50..605 | 16..571 | 2780 | 100 | Plus |
Cpr57A-RB | 1488 | CG18066-RB | 50..605 | 16..571 | 2780 | 100 | Plus |
Cpr57A-RA | 656 | CG18066-RA | 50..605 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20549631..20549989 | 389..31 | 1795 | 100 | Minus |
2R | 25286936 | 2R | 20549379..20549561 | 571..389 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:50 has no hits.
BS06419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:33 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RB | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:59 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp57d-RB | 18..580 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:15 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 57..605 | 23..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:34 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp57d-RB | 18..580 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:05 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr57A-RA | 57..605 | 23..571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:05 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20549379..20549561 | 389..571 | 100 | <- | Minus |
2R | 20549632..20549996 | 23..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:15 Download gff for
BS06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16436884..16437066 | 389..571 | 100 | <- | Minus |
arm_2R | 16437137..16437501 | 23..388 | 98 | | Minus |
BS06419.pep Sequence
Translation from 16 to 570
> BS06419.pep
MFIVLVVCLLAVAAADVSHLVTPEPKVPASPYVFSYQAGRAPGHVDRQHT
EVSDGSGVIRGAFSYVDPKNQVRTVQYVADEHGFHPQLSHKLEDSAAVQA
AKQRHFAAYNRIAQEHANHTPGQVALANAPHASAAVAHATQKHLSAFERI
AAEHAAIGRQQEAQRLALAAQSEHGEIEDGQYHP*
BS06419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr57A-PB | 184 | CG18066-PB | 1..184 | 1..184 | 949 | 100 | Plus |
Cpr57A-PA | 184 | CG18066-PA | 1..184 | 1..184 | 949 | 100 | Plus |