Clone BS06429 Report

Search the DGRC for BS06429

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)37Cc-RA
Protein status:BS06429.pep: full length peptide match
Sequenced Size:862

Clone Sequence Records

BS06429.3prime Sequence

860 bp (859 high quality bases) assembled on 2005-12-03

> BS06429.3prime
ATGGTCTAGAAAGCTCTACTGCGCGATGGTCGATGGCAGATTGAGCAGCG
TGCTCTGTCCGCTGGGCAAGTAGGCGACACCACGGGACCGGGATAGCTGG
TAGGCGATATCCTCGGCGGCCTCAATACGTCGCAGCTCCACCAGACCGTC
TCCGGCCTCGCCGAATGACTTGGCCAACAGGCCAGCGGCTTCGGCATCAC
CCTCCGCCGAAATGATGGACGCCAGCTTCTGTTGCTCGGCCTTCTCCACG
ACAAAACGCGCCTTCTCCGCCTCCTGCTGGGCCACCTGCTTCATCTCGAC
GGCCAGCGTGAACTCCCGACCGAAGGTCAAGTGCGTGAGCGAGATGTCAT
CCAGAATAAAGCCGAACTGCTTGGCACGTACAGTCAGTTCCTGGGAAACG
CGCTGCGACACCATCTCACGCTGGGTGATCAGCTCGCCGGCGTCGAACTG
GGCGACCACAGCCTTCAGCACCTCAGGCGCGATGGAGGGCAGGACACGCT
CGTCGTAGTCCTGGCCGAGAATGGTGTAGATCTTGGGCAGCTGGTCTGGA
ATGGGGCGGTACAGGATTCGGAGCGTGATGTTGACATTCTGCAGATCCTT
GCTGCCCGTTATCACAGGAACGTTGCGGGGCTGGGACCGGATGTCGAAGA
TGATGGGCCGCTGCACCCATGGGATGAAGAAGTGGGTACCCTCGCCGACC
ACGTTCTCCTTGATGCCGGTGAAGCGATCGAAGATGACCGCCCGGTGGCC
GCCTTCCACATTATATAATGCCGAATTGACAACGCCACCCAAAACGGCCA
CTCCGAGGCCCATTTGGCCAATGCGATTAAAGAACTGAGCAGCCATGTCG
ACTGATAACT

BS06429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10691-PB 831 l(2)37Cc-RB 1..831 846..16 4155 100 Minus
CG10691-PA 831 l(2)37Cc-RA 1..831 846..16 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cc-RD 2022 CG10691-RD 118..948 846..16 4155 100 Minus
l(2)37Cc-RA 1325 CG10691-RA 102..932 846..16 4155 100 Minus
l(2)37Cc-RB 1327 CG10691-RB 118..948 846..16 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19123121..19123552 415..846 2160 100 Plus
2L 23513712 2L 19122419..19122819 16..416 2005 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:07:39 has no hits.

BS06429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:40 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10691-PA 1..831 16..846 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:47 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10691-PA 1..831 16..846 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:15 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..950 12..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:28 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..950 12..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:28 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19122417..19122817 12..414 99 <- Plus
2L 19123121..19123552 415..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:15 Download gff for BS06429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19122417..19122817 12..414 99 <- Plus
arm_2L 19123121..19123552 415..846 100   Plus

BS06429.5prime Sequence

860 bp (842 high quality bases) assembled on 2005-12-03

> BS06429.5prime
GAAGTTATCAGTCGACATGGCTGCTCAGTTCTTTAATCGCATTGGCCAAA
TGGGCCTCGGAGTGGCCGTTTTGGGTGGCGTTGTCAATTCGGCATTATAT
AATGTGGAAGGCGGCCACCGGGCGGTCATCTTCGATCGCTTCACCGGCAT
CAAGGAGAACGTGGTCGGCGAGGGTACCCACTTCTTCATCCCATGGGTGC
AGCGGCCCATCATCTTCGACATCCGGTCCCAGCCCCGCAACGTTCCTGTG
ATAACGGGCAGCAAGGATCTGCAGAATGTCAACATCACGCTCCGAATCCT
GTACCGCCCCATTCCAGACCAGCTGCCCAAGATCTACACCATTCTCGGCC
AGGACTACGACGAGCGTGTCCTGCCCTCCATCGCGCCTGAGGTGCTGAAG
GCTGTGGTCGCCCAGTTCGACGCCGGCGAGCTGATCACCCAGCGTGAGAT
GGTGTCGCAGCGCGTTTCCCAGGAACTGACTGTACGTGCCAAGCAGTTCG
GCTTTATTCTGGATGACATCTCGCTCACGCACTTGACCTTCGGTCGGGAG
TTCACGCTGGCCGTCGAGATGAAGCAGGTGGCCCAGCAGGAGGCGGAGAA
GGCGCGTTTTGTCGTGGAGAAGGCCGAGCAACAGAAGCTGGCGTCCATCA
TTTCGGCGGAGGGTGATGCCGAAGCCGCTGGCCTGTTGGCCAAGTCATTC
GGCGAGGCCGGAGACGGTCTGGTGGAGCTGCGACGTATTGAGGCCGCCGA
GGATATCGCCTACCAGCTATCCCGGTCCCGTGGTGTCGCCTACTTGCCCA
GCGGACAGAGCACGCTGCTCAATCTGCCATCGACCATCGCGCAGTAGAGC
TTTCTAGAAC

BS06429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10691-PB 831 l(2)37Cc-RB 1..831 17..847 4155 100 Plus
CG10691-PA 831 l(2)37Cc-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cc-RD 2022 CG10691-RD 118..948 17..847 4155 100 Plus
l(2)37Cc-RA 1325 CG10691-RA 102..932 17..847 4155 100 Plus
l(2)37Cc-RB 1327 CG10691-RB 118..948 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19123121..19123552 448..17 2160 100 Minus
2L 23513712 2L 19122419..19122819 847..447 2005 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:32:08 has no hits.

BS06429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:41 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10691-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:49 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10691-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:55 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..950 17..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:23 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..950 17..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:23 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19122417..19122817 449..851 99 <- Minus
2L 19123121..19123552 17..448 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:55 Download gff for BS06429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19122417..19122817 449..851 99 <- Minus
arm_2L 19123121..19123552 17..448 100   Minus

BS06429.complete Sequence

862 bp assembled on 2008-08-15

GenBank Submission: FJ635487

> BS06429.complete
GAAGTTATCAGTCGACATGGCTGCTCAGTTCTTTAATCGCATTGGCCAAA
TGGGCCTCGGAGTGGCCGTTTTGGGTGGCGTTGTCAATTCGGCATTATAT
AATGTGGAAGGCGGCCACCGGGCGGTCATCTTCGATCGCTTCACCGGCAT
CAAGGAGAACGTGGTCGGCGAGGGTACCCACTTCTTCATCCCATGGGTGC
AGCGGCCCATCATCTTCGACATCCGGTCCCAGCCCCGCAACGTTCCTGTG
ATAACGGGCAGCAAGGATCTGCAGAATGTCAACATCACGCTCCGAATCCT
GTACCGCCCCATTCCAGACCAGCTGCCCAAGATCTACACCATTCTCGGCC
AGGACTACGACGAGCGTGTCCTGCCCTCCATCGCGCCTGAGGTGCTGAAG
GCTGTGGTCGCCCAGTTCGACGCCGGCGAGCTGATCACCCAGCGTGAGAT
GGTGTCGCAGCGCGTTTCCCAGGAACTGACTGTACGTGCCAAGCAGTTCG
GCTTTATTCTGGATGACATCTCGCTCACGCACTTGACCTTCGGTCGGGAG
TTCACGCTGGCCGTCGAGATGAAGCAGGTGGCCCAGCAGGAGGCGGAGAA
GGCGCGTTTTGTCGTGGAGAAGGCCGAGCAACAGAAGCTGGCGTCCATCA
TTTCGGCGGAGGGTGATGCCGAAGCCGCTGGCCTGTTGGCCAAGTCATTC
GGCGAGGCCGGAGACGGTCTGGTGGAGCTGCGACGTATTGAGGCCGCCGA
GGATATCGCCTACCAGCTATCCCGGTCCCGTGGTGTCGCCTACTTGCCCA
GCGGACAGAGCACGCTGCTCAATCTGCCATCGACCATCGCGCAGTAGAGC
TTTCTAGACCAT

BS06429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cc-RD 831 CG10691-PD 1..831 17..847 4155 100 Plus
l(2)37Cc-RA 831 CG10691-PA 1..831 17..847 4155 100 Plus
l(2)37Cc-RB 831 CG10691-PB 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cc-RD 2022 CG10691-RD 118..948 17..847 4155 100 Plus
l(2)37Cc-RA 1325 CG10691-RA 102..932 17..847 4155 100 Plus
l(2)37Cc-RB 1327 CG10691-RB 118..948 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19123121..19123552 448..17 2160 100 Minus
2L 23513712 2L 19122419..19122819 847..447 2005 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:38:24 has no hits.

BS06429.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:50 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RA 102..934 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:52 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..946 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:22 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RA 102..930 17..845 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:48 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cc-RB 118..946 17..845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:48 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19122421..19122817 449..845 100 <- Minus
2L 19123121..19123552 17..448 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:52 Download gff for BS06429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19122421..19122817 449..845 100 <- Minus
arm_2L 19123121..19123552 17..448 100   Minus

BS06429.pep Sequence

Translation from 16 to 846

> BS06429.pep
MAAQFFNRIGQMGLGVAVLGGVVNSALYNVEGGHRAVIFDRFTGIKENVV
GEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIP
DQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRV
SQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKARFVV
EKAEQQKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQ
LSRSRGVAYLPSGQSTLLNLPSTIAQ*

BS06429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cc-PD 276 CG10691-PD 1..276 1..276 1370 100 Plus
l(2)37Cc-PA 276 CG10691-PA 1..276 1..276 1370 100 Plus
l(2)37Cc-PB 276 CG10691-PB 1..276 1..276 1370 100 Plus
Phb2-PF 299 CG15081-PF 21..283 12..270 644 50.6 Plus
Phb2-PA 299 CG15081-PA 21..283 12..270 644 50.6 Plus