Clone Sequence Records
BS06429.3prime Sequence
860 bp (859 high quality bases) assembled on 2005-12-03
> BS06429.3prime
ATGGTCTAGAAAGCTCTACTGCGCGATGGTCGATGGCAGATTGAGCAGCG
TGCTCTGTCCGCTGGGCAAGTAGGCGACACCACGGGACCGGGATAGCTGG
TAGGCGATATCCTCGGCGGCCTCAATACGTCGCAGCTCCACCAGACCGTC
TCCGGCCTCGCCGAATGACTTGGCCAACAGGCCAGCGGCTTCGGCATCAC
CCTCCGCCGAAATGATGGACGCCAGCTTCTGTTGCTCGGCCTTCTCCACG
ACAAAACGCGCCTTCTCCGCCTCCTGCTGGGCCACCTGCTTCATCTCGAC
GGCCAGCGTGAACTCCCGACCGAAGGTCAAGTGCGTGAGCGAGATGTCAT
CCAGAATAAAGCCGAACTGCTTGGCACGTACAGTCAGTTCCTGGGAAACG
CGCTGCGACACCATCTCACGCTGGGTGATCAGCTCGCCGGCGTCGAACTG
GGCGACCACAGCCTTCAGCACCTCAGGCGCGATGGAGGGCAGGACACGCT
CGTCGTAGTCCTGGCCGAGAATGGTGTAGATCTTGGGCAGCTGGTCTGGA
ATGGGGCGGTACAGGATTCGGAGCGTGATGTTGACATTCTGCAGATCCTT
GCTGCCCGTTATCACAGGAACGTTGCGGGGCTGGGACCGGATGTCGAAGA
TGATGGGCCGCTGCACCCATGGGATGAAGAAGTGGGTACCCTCGCCGACC
ACGTTCTCCTTGATGCCGGTGAAGCGATCGAAGATGACCGCCCGGTGGCC
GCCTTCCACATTATATAATGCCGAATTGACAACGCCACCCAAAACGGCCA
CTCCGAGGCCCATTTGGCCAATGCGATTAAAGAACTGAGCAGCCATGTCG
ACTGATAACT
BS06429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10691-PB | 831 | l(2)37Cc-RB | 1..831 | 846..16 | 4155 | 100 | Minus |
CG10691-PA | 831 | l(2)37Cc-RA | 1..831 | 846..16 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cc-RD | 2022 | CG10691-RD | 118..948 | 846..16 | 4155 | 100 | Minus |
l(2)37Cc-RA | 1325 | CG10691-RA | 102..932 | 846..16 | 4155 | 100 | Minus |
l(2)37Cc-RB | 1327 | CG10691-RB | 118..948 | 846..16 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19123121..19123552 | 415..846 | 2160 | 100 | Plus |
2L | 23513712 | 2L | 19122419..19122819 | 16..416 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:07:39 has no hits.
BS06429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:40 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10691-PA | 1..831 | 16..846 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:47 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10691-PA | 1..831 | 16..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:15 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..950 | 12..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:28 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..950 | 12..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:28 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19122417..19122817 | 12..414 | 99 | <- | Plus |
2L | 19123121..19123552 | 415..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:15 Download gff for
BS06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19122417..19122817 | 12..414 | 99 | <- | Plus |
arm_2L | 19123121..19123552 | 415..846 | 100 | | Plus |
BS06429.5prime Sequence
860 bp (842 high quality bases) assembled on 2005-12-03
> BS06429.5prime
GAAGTTATCAGTCGACATGGCTGCTCAGTTCTTTAATCGCATTGGCCAAA
TGGGCCTCGGAGTGGCCGTTTTGGGTGGCGTTGTCAATTCGGCATTATAT
AATGTGGAAGGCGGCCACCGGGCGGTCATCTTCGATCGCTTCACCGGCAT
CAAGGAGAACGTGGTCGGCGAGGGTACCCACTTCTTCATCCCATGGGTGC
AGCGGCCCATCATCTTCGACATCCGGTCCCAGCCCCGCAACGTTCCTGTG
ATAACGGGCAGCAAGGATCTGCAGAATGTCAACATCACGCTCCGAATCCT
GTACCGCCCCATTCCAGACCAGCTGCCCAAGATCTACACCATTCTCGGCC
AGGACTACGACGAGCGTGTCCTGCCCTCCATCGCGCCTGAGGTGCTGAAG
GCTGTGGTCGCCCAGTTCGACGCCGGCGAGCTGATCACCCAGCGTGAGAT
GGTGTCGCAGCGCGTTTCCCAGGAACTGACTGTACGTGCCAAGCAGTTCG
GCTTTATTCTGGATGACATCTCGCTCACGCACTTGACCTTCGGTCGGGAG
TTCACGCTGGCCGTCGAGATGAAGCAGGTGGCCCAGCAGGAGGCGGAGAA
GGCGCGTTTTGTCGTGGAGAAGGCCGAGCAACAGAAGCTGGCGTCCATCA
TTTCGGCGGAGGGTGATGCCGAAGCCGCTGGCCTGTTGGCCAAGTCATTC
GGCGAGGCCGGAGACGGTCTGGTGGAGCTGCGACGTATTGAGGCCGCCGA
GGATATCGCCTACCAGCTATCCCGGTCCCGTGGTGTCGCCTACTTGCCCA
GCGGACAGAGCACGCTGCTCAATCTGCCATCGACCATCGCGCAGTAGAGC
TTTCTAGAAC
BS06429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10691-PB | 831 | l(2)37Cc-RB | 1..831 | 17..847 | 4155 | 100 | Plus |
CG10691-PA | 831 | l(2)37Cc-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cc-RD | 2022 | CG10691-RD | 118..948 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RA | 1325 | CG10691-RA | 102..932 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RB | 1327 | CG10691-RB | 118..948 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19123121..19123552 | 448..17 | 2160 | 100 | Minus |
2L | 23513712 | 2L | 19122419..19122819 | 847..447 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:32:08 has no hits.
BS06429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:41 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10691-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:49 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10691-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:55 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..950 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:23 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..950 | 17..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:23 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19122417..19122817 | 449..851 | 99 | <- | Minus |
2L | 19123121..19123552 | 17..448 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:55 Download gff for
BS06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19122417..19122817 | 449..851 | 99 | <- | Minus |
arm_2L | 19123121..19123552 | 17..448 | 100 | | Minus |
BS06429.complete Sequence
862 bp assembled on 2008-08-15
GenBank Submission: FJ635487
> BS06429.complete
GAAGTTATCAGTCGACATGGCTGCTCAGTTCTTTAATCGCATTGGCCAAA
TGGGCCTCGGAGTGGCCGTTTTGGGTGGCGTTGTCAATTCGGCATTATAT
AATGTGGAAGGCGGCCACCGGGCGGTCATCTTCGATCGCTTCACCGGCAT
CAAGGAGAACGTGGTCGGCGAGGGTACCCACTTCTTCATCCCATGGGTGC
AGCGGCCCATCATCTTCGACATCCGGTCCCAGCCCCGCAACGTTCCTGTG
ATAACGGGCAGCAAGGATCTGCAGAATGTCAACATCACGCTCCGAATCCT
GTACCGCCCCATTCCAGACCAGCTGCCCAAGATCTACACCATTCTCGGCC
AGGACTACGACGAGCGTGTCCTGCCCTCCATCGCGCCTGAGGTGCTGAAG
GCTGTGGTCGCCCAGTTCGACGCCGGCGAGCTGATCACCCAGCGTGAGAT
GGTGTCGCAGCGCGTTTCCCAGGAACTGACTGTACGTGCCAAGCAGTTCG
GCTTTATTCTGGATGACATCTCGCTCACGCACTTGACCTTCGGTCGGGAG
TTCACGCTGGCCGTCGAGATGAAGCAGGTGGCCCAGCAGGAGGCGGAGAA
GGCGCGTTTTGTCGTGGAGAAGGCCGAGCAACAGAAGCTGGCGTCCATCA
TTTCGGCGGAGGGTGATGCCGAAGCCGCTGGCCTGTTGGCCAAGTCATTC
GGCGAGGCCGGAGACGGTCTGGTGGAGCTGCGACGTATTGAGGCCGCCGA
GGATATCGCCTACCAGCTATCCCGGTCCCGTGGTGTCGCCTACTTGCCCA
GCGGACAGAGCACGCTGCTCAATCTGCCATCGACCATCGCGCAGTAGAGC
TTTCTAGACCAT
BS06429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cc-RD | 831 | CG10691-PD | 1..831 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RA | 831 | CG10691-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RB | 831 | CG10691-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cc-RD | 2022 | CG10691-RD | 118..948 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RA | 1325 | CG10691-RA | 102..932 | 17..847 | 4155 | 100 | Plus |
l(2)37Cc-RB | 1327 | CG10691-RB | 118..948 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19123121..19123552 | 448..17 | 2160 | 100 | Minus |
2L | 23513712 | 2L | 19122419..19122819 | 847..447 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:38:24 has no hits.
BS06429.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:41:50 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RA | 102..934 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:52 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..946 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:22 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RA | 102..930 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:48 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)37Cc-RB | 118..946 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:48 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19122421..19122817 | 449..845 | 100 | <- | Minus |
2L | 19123121..19123552 | 17..448 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:52 Download gff for
BS06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19122421..19122817 | 449..845 | 100 | <- | Minus |
arm_2L | 19123121..19123552 | 17..448 | 100 | | Minus |
BS06429.pep Sequence
Translation from 16 to 846
> BS06429.pep
MAAQFFNRIGQMGLGVAVLGGVVNSALYNVEGGHRAVIFDRFTGIKENVV
GEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIP
DQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRV
SQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKARFVV
EKAEQQKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQ
LSRSRGVAYLPSGQSTLLNLPSTIAQ*
BS06429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)37Cc-PD | 276 | CG10691-PD | 1..276 | 1..276 | 1370 | 100 | Plus |
l(2)37Cc-PA | 276 | CG10691-PA | 1..276 | 1..276 | 1370 | 100 | Plus |
l(2)37Cc-PB | 276 | CG10691-PB | 1..276 | 1..276 | 1370 | 100 | Plus |
Phb2-PF | 299 | CG15081-PF | 21..283 | 12..270 | 644 | 50.6 | Plus |
Phb2-PA | 299 | CG15081-PA | 21..283 | 12..270 | 644 | 50.6 | Plus |