Clone Sequence Records
BS06432.3prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-03
> BS06432.3prime
ATGGTCTAGAAAGCTTCTAGATGTGGCCGCCCTCCTTTAGCTTGGCCACC
AGGGCATCCACGTCGGCGACGGTGGCGCCGGCCTGGCGCACAGGAGGATC
CTCCACGGAGATGACCTCGATGCGGGGCGAGGTGTCCACGCCGAGATCCT
TGGCCGTAACCTTCTTCAGCGGCTTCTTCTTGGCCTTCATGATGTTCGGC
AACGTGGCGTAGCGAGGGGTGTTCAGCCGGAGATCGGCGCTCAGCACAGC
CGGGGTCTTGGTCTTGATTGTCTCCAGGCCACCATCAATTTCACGCGTGA
TGGTCAGACCGGCGTCTGTCTTCTCGATCTTGTTGCAGAAGGTGCCCTGC
GGCCAGTCGAGCACGGCGGCGGTCATCTGGGCCGTTTGGTTGGCATCATC
GTCGATGGCCTGCTTGCCAAGGATGACCAGGTCGGCTTTTTCGTCAAGAG
CCAACTTGGCCAGAATCTTCGACACGTGGATGGGCTGCAGAAGCTCGTAC
TCGGCGGCCGGGATCTCTACGTGGACGCCGCGATCGGCGCCCATGGCCAG
GGCGGTGCGGATCACCTCCTGCGACTGGGCCGGGCCCACGGAGACGGCGA
TCACCTCCTCGGCCAGCTTTTTCTCCTTCAGCTTCACCGCCTCCTCCACG
GCGATCTCGTCGAAGGGATTCATCGAGTGCTTCACGCCCTGGGTGACCAC
GCCAGTCTTGTCGGGCTTGACGCGCACCTTGACGGCGTAGTCGATCACAC
GCTTAACTCCAACCAAAACACGCGCCATGTCGACTGATAACT
BS06432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-PA | 762 | CG7834-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
| CG7834-PB | 762 | CG7834-RB | 1..762 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 1116 | CG7834-RB | 5..767 | 778..16 | 3815 | 100 | Minus |
| CG7834-RA | 1021 | CG7834-RA | 44..806 | 778..16 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29801948..29802665 | 16..733 | 3575 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29802787..29802840 | 725..778 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:00:26 has no hits.
BS06432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:47 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-PB | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:56 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-PB | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:48 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..817 | 4..785 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:20 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..817 | 4..785 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:20 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29801937..29802659 | 4..727 | 99 | <- | Plus |
| 3R | 29802790..29802835 | 728..773 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:48 Download gff for
BS06432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25627659..25628381 | 4..727 | 99 | <- | Plus |
| arm_3R | 25628512..25628557 | 728..773 | 100 | -> | Plus |
BS06432.5prime Sequence
792 bp (759 high quality bases) assembled on 2005-12-03
> BS06432.5prime
GAAGTTATCAGTCGACATGGCGCGTGTTTTGGTTGGAGTTAAGCGTGTGA
TCGACTACGCCGTCAAGGTGCGCGTCAAGCCCGACAAGACTGGCGTGGTC
ACCCAGGGCGTGAAGCACTCGATGAATCCCTTCGACGAGATCGCCGTGGA
GGAGGCGGTGAAGCTGAAGGAGAAAAAGCTGGCCGAGGAGGTGATCGCCG
TCTCCGTGGGCCCGGCCCAGTCGCAGGAGGTGATCCGCACCGCCCTGGCC
ATGGGCGCCGATCGCGGCGTCCACGTAGAGATCCCGGCCGCCGAGTACGA
GCTTCTGCAGCCCATCCACGTGTCGAAGATTCTGGCCAAGTTGGCTCTTG
ACGAAAAAGCCGACCTGGTCATCCTTGGCAAGCAGGCCATCGACGATGAT
GCCAACCAAACGGCCCAGATGACCGCCGCCGTGCTCGACTGGCCGCAGGG
CACCTTCTGCAACAAGATCGAGAAGACAGACGCCGGTCTGACCATCACGC
GTGAAATTGATGGTGGCCTGGAGACAATCAAGACCAAGACCCCGGCTGTG
CTGAGCGCCGATCTCCGGCTGAACACCCCTCGCTACGCCACGTTGCCGAA
CATCATGAAGGCCAAGAAGAAGCCGCTGAAGAAGGTTACGGCCAAGGATC
TCGGCGTGGACACCTCGCCCCGCATCGAGGTCATCTCCGTGGAGGATCCT
CCTGTGCGCCAGGCCGGCGCCACCGTCGCCGACGTGGATGCCCTGGTGGC
CAAGCTAAAGGAGGGCGGCCACATCTAGAAGCTTTCTAGACC
BS06432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-PA | 762 | CG7834-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG7834-PB | 762 | CG7834-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 1116 | CG7834-RB | 5..767 | 17..779 | 3815 | 100 | Plus |
| CG7834-RA | 1021 | CG7834-RA | 44..806 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29801948..29802665 | 779..62 | 3575 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29802787..29802840 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:36:31 has no hits.
BS06432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:48 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:57 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:41 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..817 | 10..791 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:29 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..817 | 10..791 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:29 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29801937..29802659 | 68..791 | 99 | <- | Minus |
| 3R | 29802790..29802835 | 22..67 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:41 Download gff for
BS06432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25627659..25628381 | 68..791 | 99 | <- | Minus |
| arm_3R | 25628512..25628557 | 22..67 | 100 | -> | Minus |
BS06432.complete Sequence
794 bp (794 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635489
> BS06432.complete
GAAGTTATCAGTCGACATGGCGCGTGTTTTGGTTGGAGTTAAGCGTGTGA
TCGACTACGCCGTCAAGGTGCGCGTCAAGCCCGACAAGACTGGCGTGGTC
ACCCAGGGCGTGAAGCACTCGATGAATCCCTTCGACGAGATCGCCGTGGA
GGAGGCGGTGAAGCTGAAGGAGAAAAAGCTGGCCGAGGAGGTGATCGCCG
TCTCCGTGGGCCCGGCCCAGTCGCAGGAGGTGATCCGCACCGCCCTGGCC
ATGGGCGCCGATCGCGGCGTCCACGTAGAGATCCCGGCCGCCGAGTACGA
GCTTCTGCAGCCCATCCACGTGTCGAAGATTCTGGCCAAGTTGGCTCTTG
ACGAAAAAGCCGACCTGGTCATCCTTGGCAAGCAGGCCATCGACGATGAT
GCCAACCAAACGGCCCAGATGACCGCCGCCGTGCTCGACTGGCCGCAGGG
CACCTTCTGCAACAAGATCGAGAAGACAGACGCCGGTCTGACCATCACGC
GTGAAATTGATGGTGGCCTGGAGACAATCAAGACCAAGACCCCGGCTGTG
CTGAGCGCCGATCTCCGGCTGAACACCCCTCGCTACGCCACGTTGCCGAA
CATCATGAAGGCCAAGAAGAAGCCGCTGAAGAAGGTTACGGCCAAGGATC
TCGGCGTGGACACCTCGCCCCGCATCGAGGTCATCTCCGTGGAGGATCCT
CCTGTGCGCCAGGCCGGCGCCACCGTCGCCGACGTGGATGCCCTGGTGGC
CAAGCTAAAGGAGGGCGGCCACATCTAGAAGCTTTCTAGACCAT
BS06432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 762 | CG7834-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG7834-RA | 762 | CG7834-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 1116 | CG7834-RB | 5..767 | 17..779 | 3815 | 100 | Plus |
| CG7834-RA | 1021 | CG7834-RA | 44..806 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29801948..29802665 | 779..62 | 3575 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29802787..29802840 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:44:05 has no hits.
BS06432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:57 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:51 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RB | 1..778 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:31 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 44..805 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:58 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RB | 1..778 | 14..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:02 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 44..805 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:02 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29801949..29802659 | 68..778 | 100 | <- | Minus |
| 3R | 29802790..29802840 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:31 Download gff for
BS06432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25627671..25628381 | 68..778 | 100 | <- | Minus |
| arm_3R | 25628512..25628562 | 17..67 | 100 | | Minus |
BS06432.pep Sequence
Translation from 16 to 777
> BS06432.pep
MARVLVGVKRVIDYAVKVRVKPDKTGVVTQGVKHSMNPFDEIAVEEAVKL
KEKKLAEEVIAVSVGPAQSQEVIRTALAMGADRGVHVEIPAAEYELLQPI
HVSKILAKLALDEKADLVILGKQAIDDDANQTAQMTAAVLDWPQGTFCNK
IEKTDAGLTITREIDGGLETIKTKTPAVLSADLRLNTPRYATLPNIMKAK
KKPLKKVTAKDLGVDTSPRIEVISVEDPPVRQAGATVADVDALVAKLKEG
GHI*
BS06432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-PB | 253 | CG7834-PB | 1..253 | 1..253 | 1252 | 100 | Plus |
| CG7834-PA | 253 | CG7834-PA | 1..253 | 1..253 | 1252 | 100 | Plus |
