Clone BS06433 Report

Search the DGRC for BS06433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG17919-RA
Protein status:BS06433.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06433.3prime Sequence

639 bp (638 high quality bases) assembled on 2005-12-03

> BS06433.3prime
ATGGTCTAGAAAGCTTTCAATTCTCCGAAAGTTGCTTGTGCAGTTTTGGA
ACATAGTCGTCGTACTGGGCTTGGTAGAAAGTTCCAGCAATGGGATTGCC
CAACTCGTGATTGATGGCAAACTTGGCGGCACTGAATTTGGGGCGATCCT
TGCGGGATCTCTTGCTCACGCGCTCCTCGTCGAACTCAAGTTTGCCGGAC
TGCTTGTACAGCAGGAAGACGTAGCGATGCAGACCCGTGCCCTGGGGCGG
GCCGGAGCCAATGTACTCGGCGATGGGCTCACCACTTGCCAAGTCGTTGC
CGGCGATGTTGGCCAGAATCCAGTGCTTGAACTCGCGGAACTTGGGCTCC
GCTCGGCTGGGGGCATCGGGATCCGTCATAATGAGCGTGTAGAACTCCCC
GGGCTGCGCGTCCCACTCCACGACTGGCTGATCCTTAACCTGGGTGGGCG
TTAGCTCCACTCCATCCTTGGCCACCAGGTTGTTGCTGTACGTGACCTTT
AACAACTGGTTCGGCGGCTCGGGAATAACGTCGGGTACCACCTGGTGGGA
TCTGAAAACCTCCTCCACGGAGCCAGCTTGAACGGCCAGTAGGCAGCCCA
CCAATGGCAGTAGCACTCGCAGCATGTCGACTGATAACT

BS06433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 609 CG17919-RA 1..609 625..17 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..701 625..17 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345010 499..17 2415 100 Minus
3R 32079331 3R 6344121..6344251 625..495 655 100 Minus
3R 32079331 3R 22466273..22466447 374..200 215 74.9 Minus
Blast to na_te.dros performed on 2015-02-11 22:39:27 has no hits.

BS06433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:49 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:59 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:46 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..708 10..625 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:15 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..708 10..625 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:15 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6344121..6344249 497..625 100 -> Minus
3R 6344531..6345017 10..496 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:46 Download gff for BS06433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 497..625 100 -> Minus
arm_3R 2170253..2170739 10..496 99   Minus

BS06433.5prime Sequence

639 bp (638 high quality bases) assembled on 2005-12-03

> BS06433.5prime
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATTGAAAGCTTTCTAGACC

BS06433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 609 CG17919-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..701 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345010 143..625 2415 100 Plus
3R 32079331 3R 6344121..6344251 17..147 655 100 Plus
3R 32079331 3R 22466273..22466447 268..442 215 74.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:53:00 has no hits.

BS06433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:50 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:00 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:02 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..708 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:34 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..708 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:34 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6344121..6344249 17..145 100 -> Plus
3R 6344531..6345017 146..632 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:02 Download gff for BS06433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 17..145 100 -> Plus
arm_3R 2170253..2170739 146..632 99   Plus

BS06433.complete Sequence

641 bp (641 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635490

> BS06433.complete
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATTGAAAGCTTTCTAGACCAT

BS06433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 609 CG17919-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..701 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345010 143..625 2415 100 Plus
3R 32079331 3R 6344121..6344251 17..147 655 100 Plus
3R 32079331 3R 22466273..22466447 268..442 215 74.9 Plus
Blast to na_te.dros performed on 2014-11-26 16:11:10 has no hits.

BS06433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:17 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:15 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 91..706 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:21 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..700 17..624 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:17 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 91..706 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:05 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..700 17..624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:05 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6344121..6344249 17..145 100 -> Plus
3R 6344531..6345009 146..624 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:21 Download gff for BS06433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 17..145 100 -> Plus
arm_3R 2170253..2170731 146..624 100   Plus

BS06433.pep Sequence

Translation from 16 to 624

> BS06433.pep
MLRVLLPLVGCLLAVQAGSVEEVFRSHQVVPDVIPEPPNQLLKVTYSNNL
VAKDGVELTPTQVKDQPVVEWDAQPGEFYTLIMTDPDAPSRAEPKFREFK
HWILANIAGNDLASGEPIAEYIGSGPPQGTGLHRYVFLLYKQSGKLEFDE
ERVSKRSRKDRPKFSAAKFAINHELGNPIAGTFYQAQYDDYVPKLHKQLS
EN*

BS06433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 202 CG17919-PA 1..202 1..202 1061 100 Plus
CG10298-PA 187 CG10298-PA 8..184 24..200 564 57.6 Plus
CG6180-PA 257 CG6180-PA 76..255 20..199 544 56.7 Plus
Pebp1-PA 176 CG18594-PA 6..171 29..195 465 51.5 Plus
CG7054-PA 179 CG7054-PA 4..177 29..199 457 50.3 Plus