Clone Sequence Records
BS06433.3prime Sequence
639 bp (638 high quality bases) assembled on 2005-12-03
> BS06433.3prime
ATGGTCTAGAAAGCTTTCAATTCTCCGAAAGTTGCTTGTGCAGTTTTGGA
ACATAGTCGTCGTACTGGGCTTGGTAGAAAGTTCCAGCAATGGGATTGCC
CAACTCGTGATTGATGGCAAACTTGGCGGCACTGAATTTGGGGCGATCCT
TGCGGGATCTCTTGCTCACGCGCTCCTCGTCGAACTCAAGTTTGCCGGAC
TGCTTGTACAGCAGGAAGACGTAGCGATGCAGACCCGTGCCCTGGGGCGG
GCCGGAGCCAATGTACTCGGCGATGGGCTCACCACTTGCCAAGTCGTTGC
CGGCGATGTTGGCCAGAATCCAGTGCTTGAACTCGCGGAACTTGGGCTCC
GCTCGGCTGGGGGCATCGGGATCCGTCATAATGAGCGTGTAGAACTCCCC
GGGCTGCGCGTCCCACTCCACGACTGGCTGATCCTTAACCTGGGTGGGCG
TTAGCTCCACTCCATCCTTGGCCACCAGGTTGTTGCTGTACGTGACCTTT
AACAACTGGTTCGGCGGCTCGGGAATAACGTCGGGTACCACCTGGTGGGA
TCTGAAAACCTCCTCCACGGAGCCAGCTTGAACGGCCAGTAGGCAGCCCA
CCAATGGCAGTAGCACTCGCAGCATGTCGACTGATAACT
BS06433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 609 | CG17919-RA | 1..609 | 625..17 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..701 | 625..17 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345010 | 499..17 | 2415 | 100 | Minus |
3R | 32079331 | 3R | 6344121..6344251 | 625..495 | 655 | 100 | Minus |
3R | 32079331 | 3R | 22466273..22466447 | 374..200 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:39:27 has no hits.
BS06433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:49 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:19:59 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:46 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..708 | 10..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:15 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..708 | 10..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:15 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344121..6344249 | 497..625 | 100 | -> | Minus |
3R | 6344531..6345017 | 10..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:46 Download gff for
BS06433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 497..625 | 100 | -> | Minus |
arm_3R | 2170253..2170739 | 10..496 | 99 | | Minus |
BS06433.5prime Sequence
639 bp (638 high quality bases) assembled on 2005-12-03
> BS06433.5prime
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATTGAAAGCTTTCTAGACC
BS06433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 609 | CG17919-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..701 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345010 | 143..625 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 6344121..6344251 | 17..147 | 655 | 100 | Plus |
3R | 32079331 | 3R | 22466273..22466447 | 268..442 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:53:00 has no hits.
BS06433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:50 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:00 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:02 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..708 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:34 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..708 | 17..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:34 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344121..6344249 | 17..145 | 100 | -> | Plus |
3R | 6344531..6345017 | 146..632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:02 Download gff for
BS06433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 17..145 | 100 | -> | Plus |
arm_3R | 2170253..2170739 | 146..632 | 99 | | Plus |
BS06433.complete Sequence
641 bp (641 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635490
> BS06433.complete
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATTGAAAGCTTTCTAGACCAT
BS06433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 609 | CG17919-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..701 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345010 | 143..625 | 2415 | 100 | Plus |
3R | 32079331 | 3R | 6344121..6344251 | 17..147 | 655 | 100 | Plus |
3R | 32079331 | 3R | 22466273..22466447 | 268..442 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:10 has no hits.
BS06433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:17 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:15 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 91..706 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:21 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..700 | 17..624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:17 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 91..706 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:05 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..700 | 17..624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:05 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344121..6344249 | 17..145 | 100 | -> | Plus |
3R | 6344531..6345009 | 146..624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:21 Download gff for
BS06433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 17..145 | 100 | -> | Plus |
arm_3R | 2170253..2170731 | 146..624 | 100 | | Plus |
BS06433.pep Sequence
Translation from 16 to 624
> BS06433.pep
MLRVLLPLVGCLLAVQAGSVEEVFRSHQVVPDVIPEPPNQLLKVTYSNNL
VAKDGVELTPTQVKDQPVVEWDAQPGEFYTLIMTDPDAPSRAEPKFREFK
HWILANIAGNDLASGEPIAEYIGSGPPQGTGLHRYVFLLYKQSGKLEFDE
ERVSKRSRKDRPKFSAAKFAINHELGNPIAGTFYQAQYDDYVPKLHKQLS
EN*
BS06433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 202 | CG17919-PA | 1..202 | 1..202 | 1061 | 100 | Plus |
CG10298-PA | 187 | CG10298-PA | 8..184 | 24..200 | 564 | 57.6 | Plus |
CG6180-PA | 257 | CG6180-PA | 76..255 | 20..199 | 544 | 56.7 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..171 | 29..195 | 465 | 51.5 | Plus |
CG7054-PA | 179 | CG7054-PA | 4..177 | 29..199 | 457 | 50.3 | Plus |