Clone Sequence Records
BS06434.3prime Sequence
789 bp (788 high quality bases) assembled on 2005-12-03
> BS06434.3prime
ATGGTCTAGAAAGCTTTTAGTAGGCGATTCCAGTCCTTTGATGGATCCAA
TCCAGTGCGCTGGTGATCCTAGCAAATCCAGCGGGCAATCCCAAGGTGCA
CCCGTTGGAGGCCACAAATGCGGAAATGCCCACCACGGTGGAATCCTGTT
TGGTGATCAGGGGGCTGCCGGCATCGCCAAAGCAAGTGGATCTGCCGCTG
GGCGTACGGGTGCACAGGATCTGATCGGAGACGGTGGTGGATCCGTAGAA
GGCGATACACTCGTTATTGGACATTATCTGAAGGTCGACGCATTGCAGCG
CATCGGTGAGTCCATTGCTGAAGGTGGTCACTCCCCATCCACAGACATTT
GCCCACCAGTTCTCGTAGCGCTGGGATCGATTTCTCAGTGATGGAAGGGC
CACCCGGTTGACCCGGTTGCTGAATCCGACTCGAGGAACTCGAACCAGGG
CGAGATGTTGATTACCCGTAACGTACTCACTAGTTCCCACTGTCACCGTA
AACTGGGCCTGACTCAGCCGGGTGGCTCCAAAGTAGATGGTCACTCCGGA
ACTGCCCGTTAGACACTGAGCGGATGTAAGGATCCAGGTGTCGCCTATAA
TAGTGCCACTGCACCAGATGTTGCTCTGTCCAAAGGCCATGCCCACCACA
TAGGGTGCCTGACCTTCATAAGCGGGGCTTCCATTGGTTATAATGTGATC
AGGATCCTCGGAATCCTTCTTAGCACTTCCTGCTGCGACGAGAGTGAGAC
CCAAGAAAACTACCAATAGCTTCATGTCGACTGATAACT
BS06434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-PA | 759 | CG3088-RA | 1..759 | 775..17 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-RA | 836 | CG3088-RA | 20..779 | 776..17 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9600547..9601306 | 17..776 | 3800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:09:13 has no hits.
BS06434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:51 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:01 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-PA | 1..759 | 17..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:32 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 20..779 | 17..776 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:12 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 20..779 | 17..776 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:12 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9600547..9601306 | 17..776 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:32 Download gff for
BS06434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9593647..9594406 | 17..776 | 100 | | Plus |
BS06434.5prime Sequence
789 bp (788 high quality bases) assembled on 2005-12-03
> BS06434.5prime
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACTAAAAGCTTTCTAGACC
BS06434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-PA | 759 | CG3088-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-RA | 836 | CG3088-RA | 20..779 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9600547..9601306 | 775..16 | 3800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:32:14 has no hits.
BS06434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:52 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:02 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:10 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 20..779 | 16..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:47 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 20..779 | 16..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:47 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9600547..9601306 | 16..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:10 Download gff for
BS06434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9593647..9594406 | 16..775 | 100 | | Minus |
BS06434.complete Sequence
791 bp (791 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635491
> BS06434.complete
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACTAAAAGCTTTCTAGACCAT
BS06434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-RA | 759 | CG3088-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-RA | 836 | CG3088-RA | 20..779 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9600547..9601306 | 775..16 | 3800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:41 has no hits.
BS06434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:44 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:51 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 9..768 | 16..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:14 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 21..777 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:44 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 9..768 | 16..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:35 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3088-RA | 21..777 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:35 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9600549..9601305 | 17..773 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:14 Download gff for
BS06434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9593649..9594405 | 17..773 | 100 | | Minus |
BS06434.pep Sequence
Translation from 16 to 774
> BS06434.pep
MKLLVVFLGLTLVAAGSAKKDSEDPDHIITNGSPAYEGQAPYVVGMAFGQ
SNIWCSGTIIGDTWILTSAQCLTGSSGVTIYFGATRLSQAQFTVTVGTSE
YVTGNQHLALVRVPRVGFSNRVNRVALPSLRNRSQRYENWWANVCGWGVT
TFSNGLTDALQCVDLQIMSNNECIAFYGSTTVSDQILCTRTPSGRSTCFG
DAGSPLITKQDSTVVGISAFVASNGCTLGLPAGFARITSALDWIHQRTGI
AY*
BS06434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3088-PA | 252 | CG3088-PA | 1..252 | 1..252 | 1324 | 100 | Plus |
Jon66Ci-PA | 260 | CG7118-PA | 1..259 | 1..252 | 609 | 46.6 | Plus |
Jon25Bi-PB | 266 | CG8867-PB | 1..265 | 1..252 | 607 | 46.1 | Plus |
Jon66Cii-PA | 262 | CG7170-PA | 1..261 | 1..252 | 597 | 45.5 | Plus |
Jon25Bii-PB | 276 | CG8869-PB | 43..276 | 29..252 | 594 | 47 | Plus |