Clone BS06434 Report

Search the DGRC for BS06434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG3088-RA
Protein status:BS06434.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06434.3prime Sequence

789 bp (788 high quality bases) assembled on 2005-12-03

> BS06434.3prime
ATGGTCTAGAAAGCTTTTAGTAGGCGATTCCAGTCCTTTGATGGATCCAA
TCCAGTGCGCTGGTGATCCTAGCAAATCCAGCGGGCAATCCCAAGGTGCA
CCCGTTGGAGGCCACAAATGCGGAAATGCCCACCACGGTGGAATCCTGTT
TGGTGATCAGGGGGCTGCCGGCATCGCCAAAGCAAGTGGATCTGCCGCTG
GGCGTACGGGTGCACAGGATCTGATCGGAGACGGTGGTGGATCCGTAGAA
GGCGATACACTCGTTATTGGACATTATCTGAAGGTCGACGCATTGCAGCG
CATCGGTGAGTCCATTGCTGAAGGTGGTCACTCCCCATCCACAGACATTT
GCCCACCAGTTCTCGTAGCGCTGGGATCGATTTCTCAGTGATGGAAGGGC
CACCCGGTTGACCCGGTTGCTGAATCCGACTCGAGGAACTCGAACCAGGG
CGAGATGTTGATTACCCGTAACGTACTCACTAGTTCCCACTGTCACCGTA
AACTGGGCCTGACTCAGCCGGGTGGCTCCAAAGTAGATGGTCACTCCGGA
ACTGCCCGTTAGACACTGAGCGGATGTAAGGATCCAGGTGTCGCCTATAA
TAGTGCCACTGCACCAGATGTTGCTCTGTCCAAAGGCCATGCCCACCACA
TAGGGTGCCTGACCTTCATAAGCGGGGCTTCCATTGGTTATAATGTGATC
AGGATCCTCGGAATCCTTCTTAGCACTTCCTGCTGCGACGAGAGTGAGAC
CCAAGAAAACTACCAATAGCTTCATGTCGACTGATAACT

BS06434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-PA 759 CG3088-RA 1..759 775..17 3795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-RA 836 CG3088-RA 20..779 776..17 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9600547..9601306 17..776 3800 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:09:13 has no hits.

BS06434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:51 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:01 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-PA 1..759 17..775 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:32 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 20..779 17..776 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:12 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 20..779 17..776 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:12 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9600547..9601306 17..776 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:32 Download gff for BS06434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9593647..9594406 17..776 100   Plus

BS06434.5prime Sequence

789 bp (788 high quality bases) assembled on 2005-12-03

> BS06434.5prime
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACTAAAAGCTTTCTAGACC

BS06434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-PA 759 CG3088-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-RA 836 CG3088-RA 20..779 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9600547..9601306 775..16 3800 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:32:14 has no hits.

BS06434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:52 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:02 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:10 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 20..779 16..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:47 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 20..779 16..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:47 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9600547..9601306 16..775 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:10 Download gff for BS06434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9593647..9594406 16..775 100   Minus

BS06434.complete Sequence

791 bp (791 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635491

> BS06434.complete
GAAGTTATCAGTCGACATGAAGCTATTGGTAGTTTTCTTGGGTCTCACTC
TCGTCGCAGCAGGAAGTGCTAAGAAGGATTCCGAGGATCCTGATCACATT
ATAACCAATGGAAGCCCCGCTTATGAAGGTCAGGCACCCTATGTGGTGGG
CATGGCCTTTGGACAGAGCAACATCTGGTGCAGTGGCACTATTATAGGCG
ACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCGGAGTG
ACCATCTACTTTGGAGCCACCCGGCTGAGTCAGGCCCAGTTTACGGTGAC
AGTGGGAACTAGTGAGTACGTTACGGGTAATCAACATCTCGCCCTGGTTC
GAGTTCCTCGAGTCGGATTCAGCAACCGGGTCAACCGGGTGGCCCTTCCA
TCACTGAGAAATCGATCCCAGCGCTACGAGAACTGGTGGGCAAATGTCTG
TGGATGGGGAGTGACCACCTTCAGCAATGGACTCACCGATGCGCTGCAAT
GCGTCGACCTTCAGATAATGTCCAATAACGAGTGTATCGCCTTCTACGGA
TCCACCACCGTCTCCGATCAGATCCTGTGCACCCGTACGCCCAGCGGCAG
ATCCACTTGCTTTGGCGATGCCGGCAGCCCCCTGATCACCAAACAGGATT
CCACCGTGGTGGGCATTTCCGCATTTGTGGCCTCCAACGGGTGCACCTTG
GGATTGCCCGCTGGATTTGCTAGGATCACCAGCGCACTGGATTGGATCCA
TCAAAGGACTGGAATCGCCTACTAAAAGCTTTCTAGACCAT

BS06434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-RA 759 CG3088-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-RA 836 CG3088-RA 20..779 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9600547..9601306 775..16 3800 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:41 has no hits.

BS06434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:44 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:51 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 9..768 16..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:14 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 21..777 17..773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:44 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 9..768 16..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:35 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
CG3088-RA 21..777 17..773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:35 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9600549..9601305 17..773 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:14 Download gff for BS06434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9593649..9594405 17..773 100   Minus

BS06434.pep Sequence

Translation from 16 to 774

> BS06434.pep
MKLLVVFLGLTLVAAGSAKKDSEDPDHIITNGSPAYEGQAPYVVGMAFGQ
SNIWCSGTIIGDTWILTSAQCLTGSSGVTIYFGATRLSQAQFTVTVGTSE
YVTGNQHLALVRVPRVGFSNRVNRVALPSLRNRSQRYENWWANVCGWGVT
TFSNGLTDALQCVDLQIMSNNECIAFYGSTTVSDQILCTRTPSGRSTCFG
DAGSPLITKQDSTVVGISAFVASNGCTLGLPAGFARITSALDWIHQRTGI
AY*

BS06434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3088-PA 252 CG3088-PA 1..252 1..252 1324 100 Plus
Jon66Ci-PA 260 CG7118-PA 1..259 1..252 609 46.6 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..252 607 46.1 Plus
Jon66Cii-PA 262 CG7170-PA 1..261 1..252 597 45.5 Plus
Jon25Bii-PB 276 CG8869-PB 43..276 29..252 594 47 Plus