Clone Sequence Records
BS06435.3prime Sequence
852 bp (818 high quality bases) assembled on 2005-12-03
> BS06435.3prime
ATGGTCTAGAAAGCTTTTAGCCACTCCTTGCGGACGTCATCTGCTCCAGC
ATGCGGTAGTAGCAGTACCGGCTATCGTAGTCCAGATCGTACCAGAAGTT
CACGGCGATGCACTTGTGGCTTTGGGACACATGGTGGAACCAGTAGTTGG
GCAGGTATAGGATGTCTCCCGCGTGAACACGTACTTTCAGAGGCTTGGCC
CGGGCGTACTCCGGATATTTGGCCAGGTCGGGTGACAAGGGATCAACGCT
GACCCATTCTGTGAACTGATCGCTGCCTTCCTCATCCCTCAACGGTTCAA
TGTAGAACTGACCACTATCTGAGGTCTTGTAAACGCCTGTAGGGTAAATT
CCTCGCGGTACGCAGCTAAGCTGGTGCGGCGGGATGAGAACGAAGTCCTT
GTGACCGGATATCACGCAGTACACGTTCTCGTATGGATCCTTGTGCATGG
AGGTAACGGCGCGCTCGTCGCCCAGCCAAAAGTTAACAGCATCAGGCGGT
TTGTTAAAGGACTGCTGCGCAAAGTCGAGATCACTGACCCGCAGATCAGC
AGCCAGTTCCGGTAGGTCCACACTGAGGTTAGAGTTCTGCTTTTGTATGT
AGTGGACAGCACCAGTGGGATCATCCAGGCGGCGGACCACCTCGGACAGC
TTCATTTTCGTCTCCAGCGGCAAAACGAAGTACTCCTGTCCATTTTGAGT
GGCCAAGCCGTCGGCATAGCCATTCGGGGTGATTGCCACATCCACGCTCC
TGTCCCCGAGAGCCTCGATCAGGTACTTTGGCGTCCATTTGCCAATCGCG
GGCCAATTGAGTGCCTTGCGAATGACCACCGGCTGGTTTTTGGAGTAGAA
TT
BS06435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-PA | 951 | CG10133-RA | 116..951 | 852..17 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-RA | 1097 | CG10133-RA | 140..975 | 852..17 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13449309..13450144 | 17..852 | 4180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:55:53 has no hits.
BS06435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:54 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-PA | 116..951 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:03 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-PA | 116..951 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:31 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 140..978 | 14..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:53 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 140..978 | 14..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:53 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13449306..13450144 | 14..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:31 Download gff for
BS06435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13442406..13443244 | 14..852 | 99 | | Plus |
BS06435.5prime Sequence
923 bp (815 high quality bases) assembled on 2005-12-03
> BS06435.5prime
GAAGTTATCAGTCGACATGTCCGAGGTCGAAAGAGCTCTGGATGTTCTGC
TCCAGGAAGCGGAGGAGCTGTGCATCGGGAGCAGCGTAGTGGAGCTGGAC
AGGATTCCAACCGCCTTGGAGTTTTGTCGGGAATTCTACTCCAAAAACCA
GCCGGTGGTCATTCGCAAGGCACTCAATTGGCCCGCGATTGGCAAATGGA
CGCCAAAGTACCTGATCGAGGCTCTCGGGGACAGGAGCGTGGATGTGGCA
ATCACCCCGAATGGCTATGCCGACGGCTTGGCCACTCAAAATGGACAGGA
GTACTTCGTTTTGCCGCTGGAGACGAAAATGAAGCTGTCCGAGGTGGTCC
GCCGCCTGGATGATCCCACTGGTGCTGTCCACTACATACAAAAGCAGAAC
TCTAACCTCAGTGTGGACCTACCGGAACTGGCTGCTGATCTGCGGGTCAG
TGATCTCGACTTTGCGCAGCAGTCCTTTAACAAACCGCCTGATGCTGTTA
ACTTTTGGCTGGGCGACGAGCGCGCCGTTACCTCCATGCACAAGGATCCA
TACGAGAACGTGTACTGCGTGATATCCGGTCACAAGGACTTCGTTCTCAT
CCCGCCGCACCAGCTTAGCTGCGTACCGCGAGGAATTTACCCTACAGGCG
TTTACAAGACCTCAGATAGTGGTCAGTTCTACATTGAACCGTTGAGGGAT
GAGGAAGGCAGCGATCAGTTCACAGAATGGGTCAGCGTTGATCCCTTGTC
ACCCGACCTGGCCAAATATCCGGAGTACGCCCGGGCCAAGCCTCTGAAAG
TACGTGTTCACGCGGGAGACATCCTATACCTGCCCAACTACTGGGTTCAC
CATGTGTCCCAAAGCCACAAGTGCATCGCCGTGAACTTCTGGTACGATCT
GGACTACGATAGCCGGTACTGCT
BS06435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-PA | 951 | CG10133-RA | 1..907 | 17..923 | 4485 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-RA | 1097 | CG10133-RA | 24..931 | 16..923 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13449353..13450260 | 923..16 | 4510 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:32:12 has no hits.
BS06435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:55 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:04 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:08 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 21..931 | 13..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:42 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 21..931 | 13..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:42 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13449353..13450263 | 13..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:08 Download gff for
BS06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13442453..13443363 | 13..923 | 99 | | Minus |
BS06435.complete Sequence
983 bp (983 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635492
> BS06435.complete
GAAGTTATCAGTCGACATGTCCGAGGTCGAAAGAGCTCTGGATGTTCTGC
TCCAGGAAGCGGAGGAGCTGTGCATCGGGAGCAGCGTAGTGGAGCTGGAC
AGGATTCCAACCGCCTTGGAGTTTTGTCGGGAATTCTACTCCAAAAACCA
GCCGGTGGTCATTCGCAAGGCACTCAATTGGCCCGCGATTGGCAAATGGA
CGCCAAAGTACCTGATCGAGGCTCTCGGGGACAGGAGCGTGGATGTGGCA
ATCACCCCGAATGGCTATGCCGACGGCTTGGCCACTCAAAATGGACAGGA
GTACTTCGTTTTGCCGCTGGAGACGAAAATGAAGCTGTCCGAGGTGGTCC
GCCGCCTGGATGATCCCACTGGTGCTGTCCACTACATACAAAAGCAGAAC
TCTAACCTCAGTGTGGACCTACCGGAACTGGCTGCTGATCTGCGGGTCAG
TGATCTCGACTTTGCGCAGCAGTCCTTTAACAAACCGCCTGATGCTGTTA
ACTTTTGGCTGGGCGACGAGCGCGCCGTTACCTCCATGCACAAGGATCCA
TACGAGAACGTGTACTGCGTGATATCCGGTCACAAGGACTTCGTTCTCAT
CCCGCCGCACCAGCTTAGCTGCGTACCGCGAGGAATTTACCCTACAGGCG
TTTACAAGACCTCAGATAGTGGTCAGTTCTACATTGAACCGTTGAGGGAT
GAGGAAGGCAGCGATCAGTTCACAGAATGGGTCAGCGTTGATCCCTTGTC
ACCCGACCTGGCCAAATATCCGGAGTACGCCCGGGCCAAGCCTCTGAAAG
TACGTGTTCACGCGGGAGACATCCTATACCTGCCCAACTACTGGTTCCAC
CATGTGTCCCAAAGCCACAAGTGCATCGCCGTGAACTTCTGGTACGATCT
GGACTACGATAGCCGGTACTGCTACTACCGCATGCTGGAGCAGATGACGT
CCGCAAGGAGTGGCTAAAAGCTTTCTAGACCAT
BS06435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-RA | 951 | CG10133-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-RA | 1097 | CG10133-RA | 24..975 | 16..967 | 4760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13449309..13450260 | 967..16 | 4760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:10 has no hits.
BS06435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:16 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:37 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 101..1058 | 13..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:23 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 25..973 | 17..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:16 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 101..1058 | 13..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:52 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10133-RA | 25..973 | 17..965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:52 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13449311..13450259 | 17..965 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:23 Download gff for
BS06435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13442411..13443359 | 17..965 | 100 | | Minus |
BS06435.pep Sequence
Translation from 16 to 966
> BS06435.pep
MSEVERALDVLLQEAEELCIGSSVVELDRIPTALEFCREFYSKNQPVVIR
KALNWPAIGKWTPKYLIEALGDRSVDVAITPNGYADGLATQNGQEYFVLP
LETKMKLSEVVRRLDDPTGAVHYIQKQNSNLSVDLPELAADLRVSDLDFA
QQSFNKPPDAVNFWLGDERAVTSMHKDPYENVYCVISGHKDFVLIPPHQL
SCVPRGIYPTGVYKTSDSGQFYIEPLRDEEGSDQFTEWVSVDPLSPDLAK
YPEYARAKPLKVRVHAGDILYLPNYWFHHVSQSHKCIAVNFWYDLDYDSR
YCYYRMLEQMTSARSG*
BS06435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10133-PA | 316 | CG10133-PA | 1..316 | 1..316 | 1691 | 100 | Plus |
| CG13902-PC | 394 | CG13902-PC | 162..394 | 31..294 | 204 | 24.7 | Plus |
| CG13902-PB | 401 | CG13902-PB | 169..401 | 31..294 | 204 | 24.7 | Plus |
