Clone BS06436 Report

Search the DGRC for BS06436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG32485-RA
Protein status:BS06436.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06436.5prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06436.5prime
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGTAAAAGCTTTCTAGACC

BS06436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 669 CG32485-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..885 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051514 173..685 2565 100 Plus
3L 28110227 3L 3050539..3050698 17..176 800 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:59:16 has no hits.

BS06436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:57 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:08 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:07 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:18 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 17..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:18 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 17..175 100 -> Plus
3L 3051005..3051519 176..691 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:07 Download gff for BS06436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 17..175 100 -> Plus
arm_3L 3051005..3051519 176..691 99   Plus

BS06436.3prime Sequence

699 bp (698 high quality bases) assembled on 2005-12-03

> BS06436.3prime
ATGGTCTAGAAAGCTTTTACATGTCCGTTGGCAGGATGTCGGGGATGAGG
TACTGGCACAGCTCCGCCTCGTCCGCCACAAACTTCACCTTCTTGGCCGT
ATTGTCGTCCAACAGTACACGTATGGCCGGCCAAATGGTGGAGAACAGAC
CGGGCGAGTTGATGATCAGACAGACGCCCAGGCGCTCCGGAAAGTGCTTG
CCCAGCAGCCAGATGAGATTCTGCACTAGCTGATAGTCCATGCAGCTGGT
GCTGAACTCGGCCAGATCGAAGACAATGCACAGGCGGTCGGTGACCTCCT
CGAAGCACTTCTTGCACGCCTCCTCCAAATTGTAGACGATGAAGCGCGTC
AGCTCGTCGATGTCCCGCTCCGAGCTGTGATTTTTGGCCGGAATGTAGAT
CACCGGACGGCCGATGCAGTCGCGGTGGCGCAGCAGGCGCGCCTTCTTGT
CCAGCTGGCTGCGGTCCATCTCGGACAGCTTGTCCACGCCGTATGTCTCA
CGCCACTTGTTGGTCTTTAGAATGGCCTGAAATGCGTCATCTGTGGTCTT
GAAGGCGCGCAGATAGCGACGCAGCGAAAAGTCATTGTGATACTGCTTTG
GATCCGCCTCCACAATCAATTTCATGCGCTCCTTGAGATCCTTGAAGTCC
TGCTCGTTAATTGGCGCCAGCTCCTCGGACGACATGTCGACTGATAACT

BS06436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 669 CG32485-RA 1..669 685..17 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..885 685..17 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051514 529..17 2565 100 Minus
3L 28110227 3L 3050539..3050698 685..526 800 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:07:27 has no hits.

BS06436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:56 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:06 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:13 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 11..685 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:50 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..890 11..685 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:50 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 527..685 100 -> Minus
3L 3051005..3051519 11..526 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:13 Download gff for BS06436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 527..685 100 -> Minus
arm_3L 3051005..3051519 11..526 99   Minus

BS06436.complete Sequence

701 bp (701 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635493

> BS06436.complete
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGTAAAAGCTTTCTAGACCA
T

BS06436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 669 CG32485-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-RA 1136 CG32485-RA 217..885 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3051002..3051514 173..685 2565 100 Plus
3L 28110227 3L 3050539..3050698 17..176 800 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:16:22 has no hits.

BS06436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:17 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:39 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 211..884 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:25 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..883 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:18 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 211..884 17..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:52 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
CG32485-RA 217..883 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:52 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3050539..3050697 17..175 100 -> Plus
3L 3051005..3051512 176..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:25 Download gff for BS06436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3050539..3050697 17..175 100 -> Plus
arm_3L 3051005..3051512 176..683 100   Plus

BS06436.pep Sequence

Translation from 16 to 684

> BS06436.pep
MSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFSLRRYLRAFKTTDD
AFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRHRDCIGRPVIYIPA
KNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCIVFDLAEFSTSCMD
YQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPAIRVLLDDNTAKKV
KFVADEAELCQYLIPDILPTDM*

BS06436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32485-PA 222 CG32485-PA 1..222 1..222 1167 100 Plus