Clone Sequence Records
BS06436.5prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06436.5prime
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGTAAAAGCTTTCTAGACC
BS06436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 669 | CG32485-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..885 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051514 | 173..685 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 3050539..3050698 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:59:16 has no hits.
BS06436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:57 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:08 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:07:07 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:43:18 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 17..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:43:18 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
3L | 3051005..3051519 | 176..691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:07 Download gff for
BS06436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
arm_3L | 3051005..3051519 | 176..691 | 99 | | Plus |
BS06436.3prime Sequence
699 bp (698 high quality bases) assembled on 2005-12-03
> BS06436.3prime
ATGGTCTAGAAAGCTTTTACATGTCCGTTGGCAGGATGTCGGGGATGAGG
TACTGGCACAGCTCCGCCTCGTCCGCCACAAACTTCACCTTCTTGGCCGT
ATTGTCGTCCAACAGTACACGTATGGCCGGCCAAATGGTGGAGAACAGAC
CGGGCGAGTTGATGATCAGACAGACGCCCAGGCGCTCCGGAAAGTGCTTG
CCCAGCAGCCAGATGAGATTCTGCACTAGCTGATAGTCCATGCAGCTGGT
GCTGAACTCGGCCAGATCGAAGACAATGCACAGGCGGTCGGTGACCTCCT
CGAAGCACTTCTTGCACGCCTCCTCCAAATTGTAGACGATGAAGCGCGTC
AGCTCGTCGATGTCCCGCTCCGAGCTGTGATTTTTGGCCGGAATGTAGAT
CACCGGACGGCCGATGCAGTCGCGGTGGCGCAGCAGGCGCGCCTTCTTGT
CCAGCTGGCTGCGGTCCATCTCGGACAGCTTGTCCACGCCGTATGTCTCA
CGCCACTTGTTGGTCTTTAGAATGGCCTGAAATGCGTCATCTGTGGTCTT
GAAGGCGCGCAGATAGCGACGCAGCGAAAAGTCATTGTGATACTGCTTTG
GATCCGCCTCCACAATCAATTTCATGCGCTCCTTGAGATCCTTGAAGTCC
TGCTCGTTAATTGGCGCCAGCTCCTCGGACGACATGTCGACTGATAACT
BS06436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 669 | CG32485-RA | 1..669 | 685..17 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..885 | 685..17 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051514 | 529..17 | 2565 | 100 | Minus |
3L | 28110227 | 3L | 3050539..3050698 | 685..526 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:07:27 has no hits.
BS06436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:40:56 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:06 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:13 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 11..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:50 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..890 | 11..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:50 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 527..685 | 100 | -> | Minus |
3L | 3051005..3051519 | 11..526 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:13 Download gff for
BS06436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 527..685 | 100 | -> | Minus |
arm_3L | 3051005..3051519 | 11..526 | 99 | | Minus |
BS06436.complete Sequence
701 bp (701 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635493
> BS06436.complete
GAAGTTATCAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGC
AGGACTTCAAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGAT
CCAAAGCAGTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTT
CAAGACCACAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGC
GTGAGACATACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTG
GACAAGAAGGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGT
GATCTACATTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGC
TGACGCGCTTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTC
GAGGAGGTCACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAG
CACCAGCTGCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGG
GCAAGCACTTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCC
GGTCTGTTCTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAA
TACGGCCAAGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGT
ACCTCATCCCCGACATCCTGCCAACGGACATGTAAAAGCTTTCTAGACCA
T
BS06436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 669 | CG32485-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-RA | 1136 | CG32485-RA | 217..885 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3051002..3051514 | 173..685 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 3050539..3050698 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:16:22 has no hits.
BS06436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:17 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:39 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 211..884 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:25 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..883 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:18 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 211..884 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:52 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32485-RA | 217..883 | 17..683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:52 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
3L | 3051005..3051512 | 176..683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:25 Download gff for
BS06436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3050539..3050697 | 17..175 | 100 | -> | Plus |
arm_3L | 3051005..3051512 | 176..683 | 100 | | Plus |
BS06436.pep Sequence
Translation from 16 to 684
> BS06436.pep
MSSEELAPINEQDFKDLKERMKLIVEADPKQYHNDFSLRRYLRAFKTTDD
AFQAILKTNKWRETYGVDKLSEMDRSQLDKKARLLRHRDCIGRPVIYIPA
KNHSSERDIDELTRFIVYNLEEACKKCFEEVTDRLCIVFDLAEFSTSCMD
YQLVQNLIWLLGKHFPERLGVCLIINSPGLFSTIWPAIRVLLDDNTAKKV
KFVADEAELCQYLIPDILPTDM*
BS06436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32485-PA | 222 | CG32485-PA | 1..222 | 1..222 | 1167 | 100 | Plus |