Clone Sequence Records
BS06441.3prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06441.3prime
ATGGTCTAGAAAGCTTCTAAAGACGCCATCGTTTTGAGACCGGAATCTCT
GCATTGCCGAGTCGATCTGCAGACCTGGTATTTCGCATCTGTGCACCCGA
CTTTTCAGGCGAACTCTTCTTGGTCTTCGTCTTGCTCAGCGTACTGGCAT
CCTTAGCTGTAGATTCTGCCCTTCTGGGAGAGAGGGGTTGTCGCTTCAAC
TGAGTGGAACTGGTCTTGCCGAGCTTTGGCTGAGCACGGAATGATCCCTG
CCCGGCTACTTTCCTTTTGCGAGGCTGAATGACGACCGTCTTGGAGGAAT
TGGCACTGGTCTTCTTGCTGGACAGGGAGTGCCTTGGCGACACGGTCTTG
GTCTTGCCTCGTCCATGGGACATCTTCTCCACCAGCTTCTTAATTGCGTT
CTTCTCGCTCGGTGGCTGGATCTTAAGGAAAGTGTGTTTCTGGGTCAAAT
GCGCGGCAGTAATGGCATTTGCCGCTGGCGGAGACATCAATTCCAGTGTT
TCTGGCAAGGGAAACTCCATCGGACTTGGTTTGTATTTGAAAGGTTTCTT
TCCGTCGGCAGCTCCACGTGCTGCTTTAGGCCGACGAACTGGCGGAAGAT
TTCCATTCAGTTCCCTGCGCAGCCTGATGTGACGTTCCACCATCAAATCG
AAGATGGAGACTATCGGGGTATTCAGCATGGACGTCATGTCGACTGATAA
CT
BS06441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-PA | 672 | CG8838-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-RA | 973 | CG8838-RA | 105..780 | 688..13 | 3380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3357750..3358425 | 688..13 | 3380 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:55:54 has no hits.
BS06441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:02 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:15 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:07:54 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 101..786 | 5..696 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:15 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 101..786 | 5..696 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:15 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3357746..3358431 | 5..696 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:07:54 Download gff for
BS06441.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3357746..3358431 | 5..696 | 98 | | Minus |
BS06441.5prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS06441.5prime
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTTAGAAGCTTTCTAGA
CC
BS06441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-PA | 672 | CG8838-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-RA | 973 | CG8838-RA | 105..780 | 17..692 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3357750..3358425 | 17..692 | 3380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:32:07 has no hits.
BS06441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:03 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:17 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:05 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 101..786 | 9..700 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:33 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 101..786 | 9..700 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:33 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3357746..3358431 | 9..700 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:05 Download gff for
BS06441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3357746..3358431 | 9..700 | 98 | | Plus |
BS06441.complete Sequence
704 bp (704 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635494
> BS06441.complete
GAAGTTATCAGTCGACATGACGTCCATGCTGAATACCCCGATAGTCTCCA
TCTTCGATTTGATGGTGGAACGTCACATCAGGCTGCGCAGGGAACTGAAT
GGAAATCTTCCGCCAGTTCGTCGGCCTAAAGCAGCACGTGGAGCTGCCGA
CGGAAAGAAACCTTTCAAATACAAACCAAGTCCGATGGAGTTTCCCTTGC
CAGAAACACTGGAATTGATGTCTCCGCCAGCGGCAAATGCCATTACTGCC
GCGCATTTGACCCAGAAACACACTTTCCTTAAGATCCAGCCACCGAGCGA
GAAGAACGCAATTAAGAAGCTGGTGGAGAAGATGTCCCATGGACGAGGCA
AGACCAAGACCGTGTCGCCAAGGCACTCCCTGTCCAGCAAGAAGACCAGT
GCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGC
CGGGCAGGGATCATTCCGTGCTCAGCCAAAGCTCGGCAAGACCAGTTCCA
CTCAGTTGAAGCGACAACCCCTCTCTCCCAGAAGGGCAGAATCTACAGCT
AAGGATGCCAGTACGCTGAGCAAGACGAAGACCAAGAAGAGTTCGCCTGA
AAAGTCGGGTGCACAGATGCGAAATACCAGGTCTGCAGATCGACTCGGCA
ATGCAGAGATTCCGGTCTCAAAACGATGGCGTCTTTAGAAGCTTTCTAGA
CCAT
BS06441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-RA | 672 | CG8838-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-RA | 973 | CG8838-RA | 105..780 | 17..692 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3357750..3358425 | 17..692 | 3380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:39:22 has no hits.
BS06441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:19 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:41 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 63..748 | 9..700 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:15 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 105..776 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:19 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 63..748 | 9..700 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:04 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8838-RA | 105..776 | 17..688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:04 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3357750..3358421 | 17..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:15 Download gff for
BS06441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3357750..3358421 | 17..688 | 100 | | Plus |
BS06441.pep Sequence
Translation from 16 to 687
> BS06441.pep
MTSMLNTPIVSIFDLMVERHIRLRRELNGNLPPVRRPKAARGAADGKKPF
KYKPSPMEFPLPETLELMSPPAANAITAAHLTQKHTFLKIQPPSEKNAIK
KLVEKMSHGRGKTKTVSPRHSLSSKKTSANSSKTVVIQPRKRKVAGQGSF
RAQPKLGKTSSTQLKRQPLSPRRAESTAKDASTLSKTKTKKSSPEKSGAQ
MRNTRSADRLGNAEIPVSKRWRL*
BS06441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8838-PA | 223 | CG8838-PA | 1..223 | 1..223 | 1126 | 100 | Plus |
