Clone BS06444 Report

Search the DGRC for BS06444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1648-RA
Protein status:BS06444.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06444.3prime Sequence

723 bp (722 high quality bases) assembled on 2005-12-03

> BS06444.3prime
ATGGTCTAGAAAGCTTCTACTTCTGACCCAGATGCAGCTTGCCCAACAGG
GCGTTGGCCTGCTGTCCGGCAGACTCCTGGGCCTGTCCGGCCGCATCCTG
GACGGTCTTCTCGACGGACTGGCGCTTCTGGTCGACATACTGGTTGGCCT
CCTGCAGCTTCTGGTCCACCGTTTGACTGGTCTGCTTCAGTGCCCCATCG
ATGGCGCCCTCCGCCTGCTTCAGCTTCTGGTCCGCCACGTTCTCGGCGGC
CTTCACGCTCTTGTTGATGGCGTCGTTGGCCGCCTTCTTGGTCTGGTCCA
CCGCATTGGCGGCCGCTCGCTGGGAGGCCTCCGCCACATTGGCCGCCACC
TGCTTGGAGTTCTGGGCCACGGCCGCCGCCTGGGCCACCGTGTTGTCCAC
CGCCTGCTTGCCTTGGTTGACGGCTCCGGCGGCACGGTTCACACCCTGGT
CAATCGCCTGTCCAGCCTTCTGAGCCTCCGCGGTGGCCAGAGCAGCGGCT
TCCTTGGCCGTGCTGGCGGCCAACTGCTCGGCCTCGCCCTTGGTCTGCTG
TACGGACTGGCCCACCTTCTTGGCCTGCTCCTCGGCTAGCTTCTGGGCCT
CGGCAGCCTTCTCGTTGGCCAGCTTCTCGGCCTCATCCTTCTTCTTGCTG
AAGAGGTTGGCGGTCTTGTCACCGAAGTTCTTCAAGGAAGCTGAAATCGA
GCTGAACATGTCGACTGATAACT

BS06444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-PA 693 CG1648-RA 1..693 709..17 3465 100 Minus
CG1648-PB 699 CG1648-RB 26..699 690..17 3370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-RC 1392 CG1648-RC 196..889 709..16 3470 100 Minus
CG1648-RA 1047 CG1648-RA 196..889 709..16 3470 100 Minus
CG1648-RB 884 CG1648-RB 52..726 690..16 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9811477..9811969 16..508 2465 100 Plus
2R 25286936 2R 9812482..9812667 508..693 930 100 Plus
Blast to na_te.dros performed 2015-02-10 21:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2933..2997 247..183 109 63.1 Minus

BS06444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:08 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:24 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:10 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 191..896 8..714 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:05 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 191..896 8..714 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:05 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9811470..9811968 8..507 99 <- Plus
2R 9812482..9812664 508..690 100 <- Plus
2R 9819840..9819863 691..714 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:10 Download gff for BS06444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5698975..5699473 8..507 99 <- Plus
arm_2R 5699987..5700169 508..690 100 <- Plus
arm_2R 5707345..5707368 691..714 91   Plus

BS06444.5prime Sequence

723 bp (722 high quality bases) assembled on 2005-12-03

> BS06444.5prime
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGTAGAAGCTTTCTAGACC

BS06444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-PA 693 CG1648-RA 1..693 17..709 3465 100 Plus
CG1648-PB 699 CG1648-RB 26..699 36..709 3370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-RC 1392 CG1648-RC 196..889 17..710 3470 100 Plus
CG1648-RA 1047 CG1648-RA 196..889 17..710 3470 100 Plus
CG1648-RB 884 CG1648-RB 52..726 36..710 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9811477..9811969 710..218 2465 100 Minus
2R 25286936 2R 9812482..9812667 218..33 930 100 Minus
Blast to na_te.dros performed 2015-02-12 19:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2933..2997 479..543 109 63.1 Plus

BS06444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:09 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:26 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:21 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 191..896 12..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:14 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 191..896 12..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:14 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9811470..9811968 219..718 99 <- Minus
2R 9812482..9812664 36..218 100 <- Minus
2R 9819840..9819863 12..35 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:21 Download gff for BS06444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5698975..5699473 219..718 99 <- Minus
arm_2R 5699987..5700169 36..218 100 <- Minus
arm_2R 5707345..5707368 12..35 91   Minus

BS06444.complete Sequence

725 bp (725 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635496

> BS06444.complete
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGTAGAAGCTTTCTAGACCAT

BS06444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-RC 693 CG1648-PC 1..693 17..709 3465 100 Plus
CG1648-RA 693 CG1648-PA 1..693 17..709 3465 100 Plus
CG1648-RB 699 CG1648-PB 26..699 36..709 3370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-RC 1392 CG1648-RC 196..889 17..710 3470 100 Plus
CG1648-RA 1047 CG1648-RA 196..889 17..710 3470 100 Plus
CG1648-RB 884 CG1648-RB 52..726 36..710 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9811477..9811969 710..218 2465 100 Minus
2R 25286936 2R 9812482..9812667 218..33 930 100 Minus
Blast to na_te.dros performed 2014-11-27 13:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2933..2997 479..543 109 63.1 Plus

BS06444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:23 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:44 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 189..894 12..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:02 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 201..888 22..709 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:23 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 189..894 12..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:07 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1648-RA 201..888 22..709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:07 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9811478..9811968 219..709 100 <- Minus
2R 9812482..9812675 26..218 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:02 Download gff for BS06444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5698983..5699473 219..709 100 <- Minus
arm_2R 5699987..5700180 26..218 97   Minus

BS06444.pep Sequence

Translation from 16 to 708

> BS06444.pep
MFSSISASLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKKVG
QSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVNQG
KQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAINK
SVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQSVE
KTVQDAAGQAQESAGQQANALLGKLHLGQK*

BS06444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1648-PC 230 CG1648-PC 1..230 1..230 1096 100 Plus
CG1648-PA 230 CG1648-PA 1..230 1..230 1096 100 Plus
CG1648-PB 232 CG1648-PB 10..232 8..230 1065 100 Plus
CG45076-PH 619 CG45076-PH 331..545 23..218 154 26 Plus
CG45076-PA 619 CG45076-PA 331..545 23..218 154 26 Plus
CG45076-PH 619 CG45076-PH 356..562 19..221 151 28.8 Plus