Clone Sequence Records
BS06444.3prime Sequence
723 bp (722 high quality bases) assembled on 2005-12-03
> BS06444.3prime
ATGGTCTAGAAAGCTTCTACTTCTGACCCAGATGCAGCTTGCCCAACAGG
GCGTTGGCCTGCTGTCCGGCAGACTCCTGGGCCTGTCCGGCCGCATCCTG
GACGGTCTTCTCGACGGACTGGCGCTTCTGGTCGACATACTGGTTGGCCT
CCTGCAGCTTCTGGTCCACCGTTTGACTGGTCTGCTTCAGTGCCCCATCG
ATGGCGCCCTCCGCCTGCTTCAGCTTCTGGTCCGCCACGTTCTCGGCGGC
CTTCACGCTCTTGTTGATGGCGTCGTTGGCCGCCTTCTTGGTCTGGTCCA
CCGCATTGGCGGCCGCTCGCTGGGAGGCCTCCGCCACATTGGCCGCCACC
TGCTTGGAGTTCTGGGCCACGGCCGCCGCCTGGGCCACCGTGTTGTCCAC
CGCCTGCTTGCCTTGGTTGACGGCTCCGGCGGCACGGTTCACACCCTGGT
CAATCGCCTGTCCAGCCTTCTGAGCCTCCGCGGTGGCCAGAGCAGCGGCT
TCCTTGGCCGTGCTGGCGGCCAACTGCTCGGCCTCGCCCTTGGTCTGCTG
TACGGACTGGCCCACCTTCTTGGCCTGCTCCTCGGCTAGCTTCTGGGCCT
CGGCAGCCTTCTCGTTGGCCAGCTTCTCGGCCTCATCCTTCTTCTTGCTG
AAGAGGTTGGCGGTCTTGTCACCGAAGTTCTTCAAGGAAGCTGAAATCGA
GCTGAACATGTCGACTGATAACT
BS06444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PA | 693 | CG1648-RA | 1..693 | 709..17 | 3465 | 100 | Minus |
CG1648-PB | 699 | CG1648-RB | 26..699 | 690..17 | 3370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..889 | 709..16 | 3470 | 100 | Minus |
CG1648-RA | 1047 | CG1648-RA | 196..889 | 709..16 | 3470 | 100 | Minus |
CG1648-RB | 884 | CG1648-RB | 52..726 | 690..16 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811477..9811969 | 16..508 | 2465 | 100 | Plus |
2R | 25286936 | 2R | 9812482..9812667 | 508..693 | 930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 247..183 | 109 | 63.1 | Minus |
BS06444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:08 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:24 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:10 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..896 | 8..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:05 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..896 | 8..714 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:05 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9811470..9811968 | 8..507 | 99 | <- | Plus |
2R | 9812482..9812664 | 508..690 | 100 | <- | Plus |
2R | 9819840..9819863 | 691..714 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:10 Download gff for
BS06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698975..5699473 | 8..507 | 99 | <- | Plus |
arm_2R | 5699987..5700169 | 508..690 | 100 | <- | Plus |
arm_2R | 5707345..5707368 | 691..714 | 91 | | Plus |
BS06444.5prime Sequence
723 bp (722 high quality bases) assembled on 2005-12-03
> BS06444.5prime
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGTAGAAGCTTTCTAGACC
BS06444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PA | 693 | CG1648-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG1648-PB | 699 | CG1648-RB | 26..699 | 36..709 | 3370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..889 | 17..710 | 3470 | 100 | Plus |
CG1648-RA | 1047 | CG1648-RA | 196..889 | 17..710 | 3470 | 100 | Plus |
CG1648-RB | 884 | CG1648-RB | 52..726 | 36..710 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811477..9811969 | 710..218 | 2465 | 100 | Minus |
2R | 25286936 | 2R | 9812482..9812667 | 218..33 | 930 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 479..543 | 109 | 63.1 | Plus |
BS06444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:09 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:26 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:21 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..896 | 12..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:14 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..896 | 12..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:14 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9811470..9811968 | 219..718 | 99 | <- | Minus |
2R | 9812482..9812664 | 36..218 | 100 | <- | Minus |
2R | 9819840..9819863 | 12..35 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:21 Download gff for
BS06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698975..5699473 | 219..718 | 99 | <- | Minus |
arm_2R | 5699987..5700169 | 36..218 | 100 | <- | Minus |
arm_2R | 5707345..5707368 | 12..35 | 91 | | Minus |
BS06444.complete Sequence
725 bp (725 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635496
> BS06444.complete
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGTAGAAGCTTTCTAGACCAT
BS06444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 693 | CG1648-PC | 1..693 | 17..709 | 3465 | 100 | Plus |
CG1648-RA | 693 | CG1648-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG1648-RB | 699 | CG1648-PB | 26..699 | 36..709 | 3370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..889 | 17..710 | 3470 | 100 | Plus |
CG1648-RA | 1047 | CG1648-RA | 196..889 | 17..710 | 3470 | 100 | Plus |
CG1648-RB | 884 | CG1648-RB | 52..726 | 36..710 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811477..9811969 | 710..218 | 2465 | 100 | Minus |
2R | 25286936 | 2R | 9812482..9812667 | 218..33 | 930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 479..543 | 109 | 63.1 | Plus |
BS06444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:23 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:44 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 189..894 | 12..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:02 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 201..888 | 22..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:23 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 189..894 | 12..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:07 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 201..888 | 22..709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:07 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9811478..9811968 | 219..709 | 100 | <- | Minus |
2R | 9812482..9812675 | 26..218 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:02 Download gff for
BS06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698983..5699473 | 219..709 | 100 | <- | Minus |
arm_2R | 5699987..5700180 | 26..218 | 97 | | Minus |
BS06444.pep Sequence
Translation from 16 to 708
> BS06444.pep
MFSSISASLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKKVG
QSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVNQG
KQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAINK
SVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQSVE
KTVQDAAGQAQESAGQQANALLGKLHLGQK*
BS06444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PC | 230 | CG1648-PC | 1..230 | 1..230 | 1096 | 100 | Plus |
CG1648-PA | 230 | CG1648-PA | 1..230 | 1..230 | 1096 | 100 | Plus |
CG1648-PB | 232 | CG1648-PB | 10..232 | 8..230 | 1065 | 100 | Plus |
CG45076-PH | 619 | CG45076-PH | 331..545 | 23..218 | 154 | 26 | Plus |
CG45076-PA | 619 | CG45076-PA | 331..545 | 23..218 | 154 | 26 | Plus |
CG45076-PH | 619 | CG45076-PH | 356..562 | 19..221 | 151 | 28.8 | Plus |