Clone Sequence Records
BS06448.3prime Sequence
507 bp (506 high quality bases) assembled on 2005-12-03
> BS06448.3prime
ATGGTCTAGAAAGCTTTTAATCATCGGATCTATCGGTTTTGCGCAGCCAG
TGGGCATTGCTGCTTTCACATCTCTTTGCTTTTGGTTCGGATGGATCAGT
GGTTAATAGGAGGGGGTCAGAAATGTCCTTTCGCTTCCAGATTCCCTGCT
TGTATTCCGGACCGTACTTGTCTTTCATACGCTGTTCAAGCTCGTACAAT
TTTAATGGTGTCCGTTTAGCCACTGTATGCATACTCCGCACATATTTGTA
CACCCCATAGCCGATGCAGGCCAGAATTAAGGGAACTACCACAAACAGCC
CCACGTTTAAACTATTCAGCTCGGGATCGCTGACCACGTGGGTGACATCG
ACGGTTTCCAGGGCAAAGGGTGGGTAAAAGAAGCGAATGATCTTATAAGT
GGCATTGGCCAAAGTATGTTTTGGAAAAGGCTTCACGATGTCCACAAACC
TCAACGACCAGTGCGAGTCCGGCGGCGGTACCGTTATATCCATGTCGACT
GATAACT
BS06448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 477 | CG32450-RA | 1..477 | 493..17 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..593 | 493..17 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 493..230 | 1320 | 100 | Minus |
3L | 28110227 | 3L | 22330216..22330429 | 230..17 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:09:02 has no hits.
BS06448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:17 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:36 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:27 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 11..493 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:59 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 11..493 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:59 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22329894..22330157 | 230..493 | 100 | -> | Minus |
3L | 22330217..22330431 | 11..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:27 Download gff for
BS06448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 230..493 | 100 | -> | Minus |
arm_3L | 22323317..22323531 | 11..229 | 98 | | Minus |
BS06448.5prime Sequence
507 bp (506 high quality bases) assembled on 2005-12-03
> BS06448.5prime
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATTAAAAGCTTT
CTAGACC
BS06448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 477 | CG32450-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..593 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 17..280 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 22330216..22330429 | 280..493 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:37:17 has no hits.
BS06448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:18 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:37 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:32 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:59:02 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:59:02 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22330217..22330431 | 281..499 | 98 | | Plus |
3L | 22329894..22330157 | 17..280 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:32 Download gff for
BS06448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 17..280 | 100 | -> | Plus |
arm_3L | 22323317..22323531 | 281..499 | 98 | | Plus |
BS06448.complete Sequence
509 bp (509 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635497
> BS06448.complete
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATTAAAAGCTTT
CTAGACCAT
BS06448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 477 | CG32450-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..593 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 17..280 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 22330216..22330429 | 280..493 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:39 has no hits.
BS06448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:52 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:59 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:18 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..591 | 17..491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:52 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:31 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..591 | 17..491 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:31 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22329894..22330157 | 17..280 | 100 | -> | Plus |
3L | 22330217..22330427 | 281..491 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:18 Download gff for
BS06448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 17..280 | 100 | -> | Plus |
arm_3L | 22323317..22323527 | 281..491 | 100 | | Plus |
BS06448.pep Sequence
Translation from 16 to 492
> BS06448.pep
MDITVPPPDSHWSLRFVDIVKPFPKHTLANATYKIIRFFYPPFALETVDV
THVVSDPELNSLNVGLFVVVPLILACIGYGVYKYVRSMHTVAKRTPLKLY
ELEQRMKDKYGPEYKQGIWKRKDISDPLLLTTDPSEPKAKRCESSNAHWL
RKTDRSDD*
BS06448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 158 | CG32450-PA | 1..158 | 1..158 | 848 | 100 | Plus |