Clone BS06448 Report

Search the DGRC for BS06448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG32450-RA
Protein status:BS06448.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06448.3prime Sequence

507 bp (506 high quality bases) assembled on 2005-12-03

> BS06448.3prime
ATGGTCTAGAAAGCTTTTAATCATCGGATCTATCGGTTTTGCGCAGCCAG
TGGGCATTGCTGCTTTCACATCTCTTTGCTTTTGGTTCGGATGGATCAGT
GGTTAATAGGAGGGGGTCAGAAATGTCCTTTCGCTTCCAGATTCCCTGCT
TGTATTCCGGACCGTACTTGTCTTTCATACGCTGTTCAAGCTCGTACAAT
TTTAATGGTGTCCGTTTAGCCACTGTATGCATACTCCGCACATATTTGTA
CACCCCATAGCCGATGCAGGCCAGAATTAAGGGAACTACCACAAACAGCC
CCACGTTTAAACTATTCAGCTCGGGATCGCTGACCACGTGGGTGACATCG
ACGGTTTCCAGGGCAAAGGGTGGGTAAAAGAAGCGAATGATCTTATAAGT
GGCATTGGCCAAAGTATGTTTTGGAAAAGGCTTCACGATGTCCACAAACC
TCAACGACCAGTGCGAGTCCGGCGGCGGTACCGTTATATCCATGTCGACT
GATAACT

BS06448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 477 CG32450-RA 1..477 493..17 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..593 493..17 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 493..230 1320 100 Minus
3L 28110227 3L 22330216..22330429 230..17 1070 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:09:02 has no hits.

BS06448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:17 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..493 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:36 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..493 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:27 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 11..493 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:59 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 11..493 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:59 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22329894..22330157 230..493 100 -> Minus
3L 22330217..22330431 11..229 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:27 Download gff for BS06448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 230..493 100 -> Minus
arm_3L 22323317..22323531 11..229 98   Minus

BS06448.5prime Sequence

507 bp (506 high quality bases) assembled on 2005-12-03

> BS06448.5prime
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATTAAAAGCTTT
CTAGACC

BS06448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 477 CG32450-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..593 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 17..280 1320 100 Plus
3L 28110227 3L 22330216..22330429 280..493 1070 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:37:17 has no hits.

BS06448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:18 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:37 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:32 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:59:02 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..499 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:59:02 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22330217..22330431 281..499 98   Plus
3L 22329894..22330157 17..280 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:32 Download gff for BS06448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 17..280 100 -> Plus
arm_3L 22323317..22323531 281..499 98   Plus

BS06448.complete Sequence

509 bp (509 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635497

> BS06448.complete
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATTAAAAGCTTT
CTAGACCAT

BS06448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 477 CG32450-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..593 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 17..280 1320 100 Plus
3L 28110227 3L 22330216..22330429 280..493 1070 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:34:39 has no hits.

BS06448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:52 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:59 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:18 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..591 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:52 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:31 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..591 17..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:31 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22329894..22330157 17..280 100 -> Plus
3L 22330217..22330427 281..491 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:18 Download gff for BS06448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 17..280 100 -> Plus
arm_3L 22323317..22323527 281..491 100   Plus

BS06448.pep Sequence

Translation from 16 to 492

> BS06448.pep
MDITVPPPDSHWSLRFVDIVKPFPKHTLANATYKIIRFFYPPFALETVDV
THVVSDPELNSLNVGLFVVVPLILACIGYGVYKYVRSMHTVAKRTPLKLY
ELEQRMKDKYGPEYKQGIWKRKDISDPLLLTTDPSEPKAKRCESSNAHWL
RKTDRSDD*

BS06448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 158 CG32450-PA 1..158 1..158 848 100 Plus