Clone BS06449 Report

Search the DGRC for BS06449

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1827-RD
Protein status:BS06449.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06449.3prime Sequence

897 bp (782 high quality bases) assembled on 2005-12-03

> BS06449.3prime
ATGGTCTAGAAAGCTTTCACAACGCCACGATATTTACTTTGTCCTGACCA
CCTATGCATTTGACCGTTTCCAAGCGCGTAGGCCCATCCGCTCCGGCTGG
ACTGCTAACCATAAAGGGGAATTCGGCCAGGCCGTAGCAGGCAGCGCCAT
AATTACCCAGCCGATCTACGGCGATGAGAGCACCCATGAAATCCTTGTGG
TGCTTGAGAATGCGGCGAAGGCCCTCTTGAGCTGCCTCAGCCGGAGGTTT
TCCCGCCCGCATGGTCTCCACCGCTAGCAGGGAGGGCAGGAAGCGCATCA
TCACATCTCCATCTCCGGTTGCCACGGCTGCACCCACCTCGTTGTCTGCA
TAAGCGCCAGCACCCGGAATGGGGGAGTCGCCGACCCGTCCGGGAATCTT
GTGCCGCGCCCCGTTGGTGGAGGTGCCGGCGTGGATGTTGCTTTCCACGT
CGATGGCGATCATGCCGATGGTATCGTGGTTCTTGCGTCCGATCTCATAC
TCATTGCGGGCACGGTCCTCCTTCCAGCGGGTCAGCGGAGTCGGCCGCGG
CTTATACGGGCCGCAAGAGACCTTGGGATCCGGGTGAACGTTCTTCCAGA
AGTTTGGCTGGCAGTTCTCAGCCGTCCACTGTAACCACATGTCCTTCGAC
TCCGGCGTGACCAGCGACTCTGATTCGAATCCCATAGCATTGGCGAAAGC
TGACGCCGCATCACCCACCAGCATGGTGTGCTGCGTGTGTTCCAGAACAT
GCCGGGCTACCTTAATGGCATCCTTAATGCGTCGCAGACCAGCCACTGCC
CCCACATCCATGGTGGCCCCGTCCATGACCATGGCATCCAGTGTGGTTTC
GCCCAACTCGTCCCGCGATCCGCCATAGCCCACCGTTCGGTCACACT

BS06449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PA 1182 CG1827-RA 302..1182 897..17 4380 99.8 Minus
CG1827-PB 1011 CG1827-RB 131..1011 897..17 4380 99.8 Minus
CG10474-PA 1026 CG10474-RA 721..767 298..252 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 402..1282 897..17 4390 99.9 Minus
CG10474-RA 1273 CG10474-RA 607..856 481..232 380 76.8 Minus
CG10474-RA 1273 CG10474-RA 256..419 841..678 235 77 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589504..9590384 897..17 4390 99.9 Minus
2R 25286936 2R 19285812..19286061 232..481 380 76.8 Plus
2R 25286936 2R 19286249..19286412 678..841 235 76.2 Plus
Blast to na_te.dros performed on 2015-01-31 16:56:40 has no hits.

BS06449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:19 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 302..1182 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:38 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PB 131..1011 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:48 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 402..1282 17..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:00 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 402..1282 17..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:00 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9589504..9590384 17..897 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:48 Download gff for BS06449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5477009..5477889 17..897 99   Minus

BS06449.5prime Sequence

868 bp (811 high quality bases) assembled on 2005-12-03

> BS06449.5prime
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCA

BS06449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PA 1182 CG1827-RA 1..852 17..868 4260 100 Plus
CG1827-PB 1011 CG1827-RB 1..681 188..868 3405 100 Plus
CG12928-PA 837 CG12928-RA 1..63 78..16 315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 100..952 16..868 4265 100 Plus
CG10474-RA 1273 CG10474-RA 256..419 374..537 235 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589314..9590054 128..868 3705 100 Plus
2R 25286936 2R 9589149..9589262 16..129 570 100 Plus
2R 25286936 2R 19286249..19286412 537..374 235 76.2 Minus
Blast to na_te.dros performed on 2015-02-11 09:32:45 has no hits.

BS06449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:20 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:40 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:36 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 100..951 16..867 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:01 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 100..951 16..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:01 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9589149..9589262 16..129 100 -> Plus
2R 9589316..9590053 130..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:36 Download gff for BS06449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5476654..5476767 16..129 100 -> Plus
arm_2R 5476821..5477558 130..867 100   Plus

BS06449.complete Sequence

1214 bp (1214 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635498

> BS06449.complete
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCAGACAACGAGGTGGGTGCAGCCGTGGCAACCGG
AGATGGAGATGTGATGATGCGCTTCCTGCCCTCCCTGCTAGCGGTGGAGA
CCATGCGGGCGGGAAAACCTCCGGCTGAGGCAGCTCAAGAGGGCCTTCGC
CGCATTCTCAAGCACCACAAGGATTTCATGGGTGCTCTCATCGCCGTAGA
TCGGCTGGGTAATTATGGCGCTGCCTGCTACGGCCTGGCCGAATTCCCCT
TTATGGTTAGCAGTCCAGCCGGAGCGGATGGGCCTACGCGCTTGGAAACG
GTCAAATGCATAGGTGGTCAGGACAAAGTAAATATCGTGGCGTTGTGAAA
GCTTTCTAGACCAT

BS06449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1182 CG1827-PD 1..1182 17..1198 5910 100 Plus
CG10474-RA 1026 CG10474-PA 538..787 734..983 380 76.8 Plus
CG10474-RA 1026 CG10474-PA 187..350 374..537 235 76.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 100..1282 16..1198 5915 100 Plus
CG10474-RA 1273 CG10474-RA 607..856 734..983 380 76.8 Plus
CG10474-RA 1273 CG10474-RA 256..419 374..537 235 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589314..9590384 128..1198 5355 100 Plus
2R 25286936 2R 9589149..9589262 16..129 570 100 Plus
2R 25286936 2R 19285812..19286061 983..734 380 76.8 Minus
2R 25286936 2R 19286249..19286412 537..374 235 76.2 Minus
Blast to na_te.dros performed on 2014-11-26 21:56:43 has no hits.

BS06449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:05 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 1..1134 65..1198 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:25 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 44..1226 16..1198 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:40 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 101..1281 17..1197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:05 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 44..1226 16..1198 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:33 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 101..1281 17..1197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:33 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589150..9589262 17..129 100 -> Plus
2R 9589316..9590383 130..1197 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:40 Download gff for BS06449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5476655..5476767 17..129 100 -> Plus
arm_2R 5476821..5477888 130..1197 100   Plus

BS06449.pep Sequence

Translation from 16 to 1197

> BS06449.pep
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVAL*

BS06449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PD 393 CG1827-PD 1..393 1..393 2066 100 Plus
CG10474-PA 341 CG10474-PA 1..330 58..387 1013 59.3 Plus
CG4372-PA 397 CG4372-PA 7..378 13..388 817 42.6 Plus
CG7860-PB 332 CG7860-PB 34..296 72..351 263 29.4 Plus
CG7860-PA 332 CG7860-PA 34..296 72..351 263 29.4 Plus