Clone Sequence Records
BS06449.3prime Sequence
897 bp (782 high quality bases) assembled on 2005-12-03
> BS06449.3prime
ATGGTCTAGAAAGCTTTCACAACGCCACGATATTTACTTTGTCCTGACCA
CCTATGCATTTGACCGTTTCCAAGCGCGTAGGCCCATCCGCTCCGGCTGG
ACTGCTAACCATAAAGGGGAATTCGGCCAGGCCGTAGCAGGCAGCGCCAT
AATTACCCAGCCGATCTACGGCGATGAGAGCACCCATGAAATCCTTGTGG
TGCTTGAGAATGCGGCGAAGGCCCTCTTGAGCTGCCTCAGCCGGAGGTTT
TCCCGCCCGCATGGTCTCCACCGCTAGCAGGGAGGGCAGGAAGCGCATCA
TCACATCTCCATCTCCGGTTGCCACGGCTGCACCCACCTCGTTGTCTGCA
TAAGCGCCAGCACCCGGAATGGGGGAGTCGCCGACCCGTCCGGGAATCTT
GTGCCGCGCCCCGTTGGTGGAGGTGCCGGCGTGGATGTTGCTTTCCACGT
CGATGGCGATCATGCCGATGGTATCGTGGTTCTTGCGTCCGATCTCATAC
TCATTGCGGGCACGGTCCTCCTTCCAGCGGGTCAGCGGAGTCGGCCGCGG
CTTATACGGGCCGCAAGAGACCTTGGGATCCGGGTGAACGTTCTTCCAGA
AGTTTGGCTGGCAGTTCTCAGCCGTCCACTGTAACCACATGTCCTTCGAC
TCCGGCGTGACCAGCGACTCTGATTCGAATCCCATAGCATTGGCGAAAGC
TGACGCCGCATCACCCACCAGCATGGTGTGCTGCGTGTGTTCCAGAACAT
GCCGGGCTACCTTAATGGCATCCTTAATGCGTCGCAGACCAGCCACTGCC
CCCACATCCATGGTGGCCCCGTCCATGACCATGGCATCCAGTGTGGTTTC
GCCCAACTCGTCCCGCGATCCGCCATAGCCCACCGTTCGGTCACACT
BS06449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PA | 1182 | CG1827-RA | 302..1182 | 897..17 | 4380 | 99.8 | Minus |
CG1827-PB | 1011 | CG1827-RB | 131..1011 | 897..17 | 4380 | 99.8 | Minus |
CG10474-PA | 1026 | CG10474-RA | 721..767 | 298..252 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 402..1282 | 897..17 | 4390 | 99.9 | Minus |
CG10474-RA | 1273 | CG10474-RA | 607..856 | 481..232 | 380 | 76.8 | Minus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 841..678 | 235 | 77 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589504..9590384 | 897..17 | 4390 | 99.9 | Minus |
2R | 25286936 | 2R | 19285812..19286061 | 232..481 | 380 | 76.8 | Plus |
2R | 25286936 | 2R | 19286249..19286412 | 678..841 | 235 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:56:40 has no hits.
BS06449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:19 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 302..1182 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:38 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PB | 131..1011 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:48 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 402..1282 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:00 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 402..1282 | 17..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:00 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589504..9590384 | 17..897 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:48 Download gff for
BS06449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5477009..5477889 | 17..897 | 99 | | Minus |
BS06449.5prime Sequence
868 bp (811 high quality bases) assembled on 2005-12-03
> BS06449.5prime
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCA
BS06449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PA | 1182 | CG1827-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG1827-PB | 1011 | CG1827-RB | 1..681 | 188..868 | 3405 | 100 | Plus |
CG12928-PA | 837 | CG12928-RA | 1..63 | 78..16 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 100..952 | 16..868 | 4265 | 100 | Plus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 374..537 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589314..9590054 | 128..868 | 3705 | 100 | Plus |
2R | 25286936 | 2R | 9589149..9589262 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 19286249..19286412 | 537..374 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:32:45 has no hits.
BS06449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:20 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:40 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:13:36 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..951 | 16..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:01 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..951 | 16..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:01 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589149..9589262 | 16..129 | 100 | -> | Plus |
2R | 9589316..9590053 | 130..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:13:36 Download gff for
BS06449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5476654..5476767 | 16..129 | 100 | -> | Plus |
arm_2R | 5476821..5477558 | 130..867 | 100 | | Plus |
BS06449.complete Sequence
1214 bp (1214 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635498
> BS06449.complete
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCAGACAACGAGGTGGGTGCAGCCGTGGCAACCGG
AGATGGAGATGTGATGATGCGCTTCCTGCCCTCCCTGCTAGCGGTGGAGA
CCATGCGGGCGGGAAAACCTCCGGCTGAGGCAGCTCAAGAGGGCCTTCGC
CGCATTCTCAAGCACCACAAGGATTTCATGGGTGCTCTCATCGCCGTAGA
TCGGCTGGGTAATTATGGCGCTGCCTGCTACGGCCTGGCCGAATTCCCCT
TTATGGTTAGCAGTCCAGCCGGAGCGGATGGGCCTACGCGCTTGGAAACG
GTCAAATGCATAGGTGGTCAGGACAAAGTAAATATCGTGGCGTTGTGAAA
GCTTTCTAGACCAT
BS06449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1182 | CG1827-PD | 1..1182 | 17..1198 | 5910 | 100 | Plus |
CG10474-RA | 1026 | CG10474-PA | 538..787 | 734..983 | 380 | 76.8 | Plus |
CG10474-RA | 1026 | CG10474-PA | 187..350 | 374..537 | 235 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 100..1282 | 16..1198 | 5915 | 100 | Plus |
CG10474-RA | 1273 | CG10474-RA | 607..856 | 734..983 | 380 | 76.8 | Plus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 374..537 | 235 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589314..9590384 | 128..1198 | 5355 | 100 | Plus |
2R | 25286936 | 2R | 9589149..9589262 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 19285812..19286061 | 983..734 | 380 | 76.8 | Minus |
2R | 25286936 | 2R | 19286249..19286412 | 537..374 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:56:43 has no hits.
BS06449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:05 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 1..1134 | 65..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:25 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 44..1226 | 16..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:40 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 101..1281 | 17..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:05 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 44..1226 | 16..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:33 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 101..1281 | 17..1197 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:33 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589150..9589262 | 17..129 | 100 | -> | Plus |
2R | 9589316..9590383 | 130..1197 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:40 Download gff for
BS06449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5476655..5476767 | 17..129 | 100 | -> | Plus |
arm_2R | 5476821..5477888 | 130..1197 | 100 | | Plus |
BS06449.pep Sequence
Translation from 16 to 1197
> BS06449.pep
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVAL*
BS06449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PD | 393 | CG1827-PD | 1..393 | 1..393 | 2066 | 100 | Plus |
CG10474-PA | 341 | CG10474-PA | 1..330 | 58..387 | 1013 | 59.3 | Plus |
CG4372-PA | 397 | CG4372-PA | 7..378 | 13..388 | 817 | 42.6 | Plus |
CG7860-PB | 332 | CG7860-PB | 34..296 | 72..351 | 263 | 29.4 | Plus |
CG7860-PA | 332 | CG7860-PA | 34..296 | 72..351 | 263 | 29.4 | Plus |