Clone Sequence Records
BS06450.5prime Sequence
462 bp (461 high quality bases) assembled on 2005-12-03
> BS06450.5prime
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGTAAAA
GCTTTCTAGACC
BS06450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PA | 1161 | CG4729-RA | 730..1161 | 17..448 | 2160 | 100 | Plus |
CG4729-PC | 1161 | CG4729-RC | 730..1161 | 17..448 | 2160 | 100 | Plus |
CG4729-PB | 1161 | CG4729-RB | 730..1161 | 17..448 | 2160 | 100 | Plus |
CG4729-PD | 432 | CG4729-RD | 1..432 | 17..448 | 2160 | 100 | Plus |
CG4753-PB | 1143 | CG4753-RB | 838..886 | 140..188 | 145 | 91.8 | Plus |
CG4753-PA | 1143 | CG4753-RA | 838..886 | 140..188 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1549 | 17..448 | 2160 | 100 | Plus |
CG4729-RD | 845 | CG4729-RD | 114..545 | 17..448 | 2160 | 100 | Plus |
CG4729-RB | 1672 | CG4729-RB | 941..1372 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 362..17 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 16382072..16382157 | 448..363 | 430 | 100 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 207..74 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:24:12 has no hits.
BS06450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:22 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PA | 730..1161 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:43 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PD | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:37 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:04:57 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:04:57 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382067..16382157 | 363..456 | 96 | <- | Minus |
3L | 16382382..16382727 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:37 Download gff for
BS06450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375167..16375257 | 363..456 | 96 | <- | Minus |
arm_3L | 16375482..16375827 | 17..362 | 100 | | Minus |
BS06450.3prime Sequence
462 bp (461 high quality bases) assembled on 2005-12-03
> BS06450.3prime
ATGGTCTAGAAAGCTTTTACTTTGCGACCGACTTGGAGGATCCATAATTA
GATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTA
AAAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCG
CCAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACC
GCCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATA
TGCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCA
GGAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAG
GCGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCT
CATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATGT
CGACTGATAACT
BS06450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PA | 1161 | CG4729-RA | 730..1161 | 448..17 | 2160 | 100 | Minus |
CG4729-PC | 1161 | CG4729-RC | 730..1161 | 448..17 | 2160 | 100 | Minus |
CG4729-PB | 1161 | CG4729-RB | 730..1161 | 448..17 | 2160 | 100 | Minus |
CG4729-PD | 432 | CG4729-RD | 1..432 | 448..17 | 2160 | 100 | Minus |
CG4753-PB | 1143 | CG4753-RB | 838..886 | 325..277 | 145 | 91.8 | Minus |
CG4753-PA | 1143 | CG4753-RA | 838..886 | 325..277 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1549 | 448..17 | 2160 | 100 | Minus |
CG4729-RD | 845 | CG4729-RD | 114..545 | 448..17 | 2160 | 100 | Minus |
CG4729-RB | 1672 | CG4729-RB | 941..1372 | 448..17 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 103..448 | 1730 | 100 | Plus |
3L | 28110227 | 3L | 16382072..16382157 | 17..102 | 430 | 100 | Plus |
3L | 28110227 | 3L | 16379425..16379558 | 258..391 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:02 has no hits.
BS06450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:21 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PA | 730..1161 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:42 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-PD | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:08 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 9..448 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:50 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 9..448 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:50 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382067..16382157 | 9..102 | 96 | <- | Plus |
3L | 16382382..16382727 | 103..448 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:08 Download gff for
BS06450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375167..16375257 | 9..102 | 96 | <- | Plus |
arm_3L | 16375482..16375827 | 103..448 | 100 | | Plus |
BS06450.complete Sequence
464 bp (464 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ638792
> BS06450.complete
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGTAAAA
GCTTTCTAGACCAT
BS06450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1194 | CG4729-PE | 763..1194 | 17..448 | 2160 | 100 | Plus |
CG4729-RD | 432 | CG4729-PD | 1..432 | 17..448 | 2160 | 100 | Plus |
CG4729-RB | 1161 | CG4729-PB | 730..1161 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-RE | 1849 | CG4729-RE | 1118..1549 | 17..448 | 2160 | 100 | Plus |
CG4729-RD | 845 | CG4729-RD | 114..545 | 17..448 | 2160 | 100 | Plus |
CG4729-RB | 1672 | CG4729-RB | 941..1372 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16382382..16382727 | 362..17 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 16382072..16382157 | 448..363 | 430 | 100 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 207..74 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:20 has no hits.
BS06450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:06 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RC | 730..1161 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:18 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:18 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1370 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:06 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1377 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:13 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4729-RB | 941..1370 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:13 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16382382..16382727 | 17..362 | 100 | | Minus |
3L | 16382074..16382157 | 363..446 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:18 Download gff for
BS06450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16375174..16375257 | 363..446 | 100 | <- | Minus |
arm_3L | 16375482..16375827 | 17..362 | 100 | | Minus |
BS06450.pep Sequence
Translation from 16 to 447
> BS06450.pep
MLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFL
ETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLA
ANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*
BS06450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4729-PD | 143 | CG4729-PD | 1..143 | 1..143 | 734 | 100 | Plus |
CG4729-PB | 386 | CG4729-PB | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PC | 386 | CG4729-PC | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PA | 386 | CG4729-PA | 244..386 | 1..143 | 734 | 100 | Plus |
CG4729-PE | 397 | CG4729-PE | 255..397 | 1..143 | 734 | 100 | Plus |