Clone BS06450 Report

Search the DGRC for BS06450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG4729-RD
Protein status:BS06450.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06450.5prime Sequence

462 bp (461 high quality bases) assembled on 2005-12-03

> BS06450.5prime
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGTAAAA
GCTTTCTAGACC

BS06450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 730..1161 17..448 2160 100 Plus
CG4729-PC 1161 CG4729-RC 730..1161 17..448 2160 100 Plus
CG4729-PB 1161 CG4729-RB 730..1161 17..448 2160 100 Plus
CG4729-PD 432 CG4729-RD 1..432 17..448 2160 100 Plus
CG4753-PB 1143 CG4753-RB 838..886 140..188 145 91.8 Plus
CG4753-PA 1143 CG4753-RA 838..886 140..188 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1549 17..448 2160 100 Plus
CG4729-RD 845 CG4729-RD 114..545 17..448 2160 100 Plus
CG4729-RB 1672 CG4729-RB 941..1372 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 362..17 1730 100 Minus
3L 28110227 3L 16382072..16382157 448..363 430 100 Minus
3L 28110227 3L 16379425..16379558 207..74 325 82.8 Minus
Blast to na_te.dros performed on 2015-02-13 09:24:12 has no hits.

BS06450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:22 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PA 730..1161 17..448 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:43 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PD 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:37 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:04:57 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:04:57 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16382067..16382157 363..456 96 <- Minus
3L 16382382..16382727 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:37 Download gff for BS06450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375167..16375257 363..456 96 <- Minus
arm_3L 16375482..16375827 17..362 100   Minus

BS06450.3prime Sequence

462 bp (461 high quality bases) assembled on 2005-12-03

> BS06450.3prime
ATGGTCTAGAAAGCTTTTACTTTGCGACCGACTTGGAGGATCCATAATTA
GATGCCTTGCTGATCTGCGTCTTGTTGATGGCCTGACCCATGAGCCAGTA
AAAAAGTCCCAGGACGGAAAGTGCGGTGATAAAGGCCGTCCAGTTGGCCG
CCAGCAGGGATGTGATCACGTAGTAGAAAATGCAGGACAGAGAGAATACC
GCCCAGCAGACAAAGTTCACGAGTGAGCACAGCCGGCGTTTATTCACATA
TGCCGGAACCTCCTTTATGCCGGACGTCTTAAAGAAGCTGCCCGTCTCCA
GGAAGCTATCGATGATCTTGTCCTTCTCCACGAACAGGTTCTGCAGCCAG
GCGGCCGCCTCCTTCTCATCCTCCGGAACCTGTTCCAGTGGAATACGCCT
CATCAGCAGGTGCGGTTCCACGCTCTTTCCATGCAGCAAACTCAGCATGT
CGACTGATAACT

BS06450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PA 1161 CG4729-RA 730..1161 448..17 2160 100 Minus
CG4729-PC 1161 CG4729-RC 730..1161 448..17 2160 100 Minus
CG4729-PB 1161 CG4729-RB 730..1161 448..17 2160 100 Minus
CG4729-PD 432 CG4729-RD 1..432 448..17 2160 100 Minus
CG4753-PB 1143 CG4753-RB 838..886 325..277 145 91.8 Minus
CG4753-PA 1143 CG4753-RA 838..886 325..277 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1549 448..17 2160 100 Minus
CG4729-RD 845 CG4729-RD 114..545 448..17 2160 100 Minus
CG4729-RB 1672 CG4729-RB 941..1372 448..17 2160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 103..448 1730 100 Plus
3L 28110227 3L 16382072..16382157 17..102 430 100 Plus
3L 28110227 3L 16379425..16379558 258..391 325 82.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:48:02 has no hits.

BS06450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:21 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PA 730..1161 17..448 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:42 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-PD 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:08 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 9..448 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:50 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 9..448 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:50 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16382067..16382157 9..102 96 <- Plus
3L 16382382..16382727 103..448 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:08 Download gff for BS06450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375167..16375257 9..102 96 <- Plus
arm_3L 16375482..16375827 103..448 100   Plus

BS06450.complete Sequence

464 bp (464 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ638792

> BS06450.complete
GAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAAC
CGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAG
AAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGAT
CATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAA
AGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAAC
TTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGAT
CACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCG
TCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAG
ATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGTAAAA
GCTTTCTAGACCAT

BS06450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1194 CG4729-PE 763..1194 17..448 2160 100 Plus
CG4729-RD 432 CG4729-PD 1..432 17..448 2160 100 Plus
CG4729-RB 1161 CG4729-PB 730..1161 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RE 1849 CG4729-RE 1118..1549 17..448 2160 100 Plus
CG4729-RD 845 CG4729-RD 114..545 17..448 2160 100 Plus
CG4729-RB 1672 CG4729-RB 941..1372 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16382382..16382727 362..17 1730 100 Minus
3L 28110227 3L 16382072..16382157 448..363 430 100 Minus
3L 28110227 3L 16379425..16379558 207..74 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:03:20 has no hits.

BS06450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:06 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 730..1161 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:18 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:18 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1370 17..446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:06 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1377 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:13 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 941..1370 17..446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:13 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16382382..16382727 17..362 100   Minus
3L 16382074..16382157 363..446 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:18 Download gff for BS06450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16375174..16375257 363..446 100 <- Minus
arm_3L 16375482..16375827 17..362 100   Minus

BS06450.pep Sequence

Translation from 16 to 447

> BS06450.pep
MLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFL
ETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLA
ANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

BS06450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PD 143 CG4729-PD 1..143 1..143 734 100 Plus
CG4729-PB 386 CG4729-PB 244..386 1..143 734 100 Plus
CG4729-PC 386 CG4729-PC 244..386 1..143 734 100 Plus
CG4729-PA 386 CG4729-PA 244..386 1..143 734 100 Plus
CG4729-PE 397 CG4729-PE 255..397 1..143 734 100 Plus