Clone BS06451 Report

Search the DGRC for BS06451

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG10934-RA
Protein status:BS06451.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06451.3prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS06451.3prime
ATGGTCTAGAAAGCTTCTATTTTTTGCGACCACGCACGGTGCTCTTCTTG
GGTGTTGATCGCTGGTTGCTCTTTCGGGTAGGACGCCGCGGACCATCGCC
TAAGTTCTCATCTGTCTCATAGTATCTGTACGTCCGGCGATTTGGTAGGG
CGTAGTCCAGGGCATGAGTGACCATTATCGCCTTGTAGGTGCACGCCACG
GACATGATAAGCTGCCCCAAATAGTAGACATCTTGGCGCAAAAACATAAA
GACTTTTGGATAGGCTTCAAAAAGGTACATGCCGGTACGAGTATTAACTG
CATTGTCCCGCAGTTTATTCATATGGCTGAGCAACTGGAGCCACACAAGC
ACCACGACCTGGGTGCACATATAGAAGACCAACAGTTCCAGCAGCAAAAG
CCAAAGCTTCTGCAGCGGTGCGCAATTCATTACCCTCAGATGATGGAGAA
AAAGCACGGCGGTCAGGACGAACAGCGCCGACGGAAGATCGGGAATATGC
TCCATGGGCAGCACATTGCATCCGGCGATGTATAGACACACGCATCCCAC
GCTGCCAGCCACCAGCTCCGTGACTTCGTACATTCCCTGTACAACCACCA
TGTCGACTGATAACT

BS06451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-PA 585 CG10934-RA 1..585 601..17 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-RA 1043 CG10934-RA 80..669 601..12 2950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17722418..17723007 601..12 2950 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:01:22 has no hits.

BS06451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:23 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:45 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:32 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..677 5..601 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:48 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..677 5..601 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:48 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17722418..17723015 5..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:32 Download gff for BS06451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13609923..13610520 5..601 99   Minus

BS06451.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS06451.5prime
GAAGTTATCAGTCGACATGGTGGTTGTACAGGGAATGTACGAAGTCACGG
AGCTGGTGGCTGGCAGCGTGGGATGCGTGTGTCTATACATCGCCGGATGC
AATGTGCTGCCCATGGAGCATATTCCCGATCTTCCGTCGGCGCTGTTCGT
CCTGACCGCCGTGCTTTTTCTCCATCATCTGAGGGTAATGAATTGCGCAC
CGCTGCAGAAGCTTTGGCTTTTGCTGCTGGAACTGTTGGTCTTCTATATG
TGCACCCAGGTCGTGGTGCTTGTGTGGCTCCAGTTGCTCAGCCATATGAA
TAAACTGCGGGACAATGCAGTTAATACTCGTACCGGCATGTACCTTTTTG
AAGCCTATCCAAAAGTCTTTATGTTTTTGCGCCAAGATGTCTACTATTTG
GGGCAGCTTATCATGTCCGTGGCGTGCACCTACAAGGCGATAATGGTCAC
TCATGCCCTGGACTACGCCCTACCAAATCGCCGGACGTACAGATACTATG
AGACAGATGAGAACTTAGGCGATGGTCCGCGGCGTCCTACCCGAAAGAGC
AACCAGCGATCAACACCCAAGAAGAGCACCGTGCGTGGTCGCAAAAAATA
GAAGCTTTCTAGACC

BS06451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-PA 585 CG10934-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-RA 1043 CG10934-RA 80..669 17..606 2950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17722418..17723007 17..606 2950 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:52:41 has no hits.

BS06451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:24 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:46 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:57 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..674 17..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:31 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..674 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:31 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17722418..17723012 17..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:57 Download gff for BS06451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13609923..13610517 17..615 99   Plus

BS06451.complete Sequence

617 bp (617 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635499

> BS06451.complete
GAAGTTATCAGTCGACATGGTGGTTGTACAGGGAATGTACGAAGTCACGG
AGCTGGTGGCTGGCAGCGTGGGATGCGTGTGTCTATACATCGCCGGATGC
AATGTGCTGCCCATGGAGCATATTCCCGATCTTCCGTCGGCGCTGTTCGT
CCTGACCGCCGTGCTTTTTCTCCATCATCTGAGGGTAATGAATTGCGCAC
CGCTGCAGAAGCTTTGGCTTTTGCTGCTGGAACTGTTGGTCTTCTATATG
TGCACCCAGGTCGTGGTGCTTGTGTGGCTCCAGTTGCTCAGCCATATGAA
TAAACTGCGGGACAATGCAGTTAATACTCGTACCGGCATGTACCTTTTTG
AAGCCTATCCAAAAGTCTTTATGTTTTTGCGCCAAGATGTCTACTATTTG
GGGCAGCTTATCATGTCCGTGGCGTGCACCTACAAGGCGATAATGGTCAC
TCATGCCCTGGACTACGCCCTACCAAATCGCCGGACGTACAGATACTATG
AGACAGATGAGAACTTAGGCGATGGTCCGCGGCGTCCTACCCGAAAGAGC
AACCAGCGATCAACACCCAAGAAGAGCACCGTGCGTGGTCGCAAAAAATA
GAAGCTTTCTAGACCAT

BS06451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-RA 585 CG10934-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-RA 1043 CG10934-RA 80..669 17..606 2950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17722418..17723007 17..606 2950 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:17:38 has no hits.

BS06451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:07 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:27 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..677 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:20 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..655 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:08 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..677 17..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:47 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
CG10934-RA 80..655 17..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:47 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17722418..17722993 17..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:20 Download gff for BS06451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13609923..13610498 17..592 100   Plus

BS06451.pep Sequence

Translation from 16 to 600

> BS06451.pep
MVVVQGMYEVTELVAGSVGCVCLYIAGCNVLPMEHIPDLPSALFVLTAVL
FLHHLRVMNCAPLQKLWLLLLELLVFYMCTQVVVLVWLQLLSHMNKLRDN
AVNTRTGMYLFEAYPKVFMFLRQDVYYLGQLIMSVACTYKAIMVTHALDY
ALPNRRTYRYYETDENLGDGPRRPTRKSNQRSTPKKSTVRGRKK*

BS06451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10934-PA 194 CG10934-PA 1..194 1..194 1019 100 Plus