Clone Sequence Records
BS06452.3prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-03
> BS06452.3prime
ATGGTCTAGAAAGCTTCTAGGATAGAATAGCATTTAATGAATCGTCTAAT
GCTATGTCTTCATCTGTGGGTCTCGTCGGAGGAGTCGGCTCCACTCGCAA
CTGCTCCATTTTCGTGTAGAACTTTGGGCACTTTTGAAGAACCTTGGAGT
ATTCCGTGAATATTTGAAAGGACGCCCTTTGGAGCAGCGTTTCTCCCATA
TGATTGGAGGCCAGTATTTTTGCCAAGTTCTTGTAGTCCCGCTGCATAAG
GCAATCCCGGGCCAGTCGTAGTTTCTCGTACGCAGTGGATCGTCGAACGC
TGAAGTAAAACTCGTTACTGGCCGGAGGAGCACAGGATGGGTTTTGGTTC
ACCCAAAAGCCATCTTCGGGACTGGTGGCGATCTCAAGCGTGCGTTTCAA
AACATTTGCGGGTATCCTTCTGGCTGGAAAATTCTCACCCTTTATTTTAC
GCGGTGCAGTTTTCAAAGGCGATGGCTTCTCATCTTTTGTTTTCATGTCG
ACTGATAACT
BS06452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18316-PA | 480 | CG18316-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-RA | 989 | CG18316-RA | 72..551 | 496..17 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8106456..8106935 | 496..17 | 2400 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 247..211 | 113 | 78.4 | Minus |
BS06452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:25 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:48 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:26 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 72..559 | 10..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:48 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| udd-RA | 72..559 | 10..496 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:48 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8106456..8106943 | 10..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:26 Download gff for
BS06452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3993961..3994448 | 10..496 | 99 | | Minus |
BS06452.5prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-03
> BS06452.5prime
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCTAGAAGC
TTTCTAGACC
BS06452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18316-PA | 480 | CG18316-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-RA | 989 | CG18316-RA | 72..551 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8106456..8106935 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 02:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 266..302 | 113 | 78.4 | Plus |
BS06452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:26 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:49 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:12 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 72..559 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:55 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| udd-RA | 72..559 | 17..503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:55 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8106456..8106943 | 17..503 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:12 Download gff for
BS06452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3993961..3994448 | 17..503 | 99 | | Plus |
BS06452.complete Sequence
512 bp (512 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635500
> BS06452.complete
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCTAGAAGC
TTTCTAGACCAT
BS06452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-RA | 480 | CG18316-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-RA | 989 | CG18316-RA | 72..551 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8106456..8106935 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 266..302 | 113 | 78.4 | Plus |
BS06452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:09 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:28 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 31..518 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:35 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 72..551 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:09 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 31..518 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:01 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| udd-RA | 72..551 | 17..496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:01 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8106456..8106935 | 17..496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:35 Download gff for
BS06452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3993961..3994440 | 17..496 | 100 | | Plus |
BS06452.pep Sequence
Translation from 16 to 495
> BS06452.pep
MKTKDEKPSPLKTAPRKIKGENFPARRIPANVLKRTLEIATSPEDGFWVN
QNPSCAPPASNEFYFSVRRSTAYEKLRLARDCLMQRDYKNLAKILASNHM
GETLLQRASFQIFTEYSKVLQKCPKFYTKMEQLRVEPTPPTRPTDEDIAL
DDSLNAILS*
BS06452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-PA | 159 | CG18316-PA | 1..159 | 1..159 | 829 | 100 | Plus |
