Clone BS06454 Report

Search the DGRC for BS06454

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6094-RA
Protein status:BS06454.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06454.5prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06454.5prime
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGTAGAAGCTTTCTAGACC

BS06454.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..725 17..628 3060 100 Plus
CG6094-RA 735 CG6094-RA 74..685 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507868 178..628 2255 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:35:48 has no hits.

BS06454.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:30 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:56 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:33 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 9..635 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:23 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 9..635 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:23 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 9..178 97 -> Plus
2L 10507419..10507871 179..635 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:33 Download gff for BS06454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 9..178 97 -> Plus
arm_2L 10507419..10507871 179..635 99   Plus

BS06454.3prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BS06454.3prime
ATGGTCTAGAAAGCTTCTACAAGTCTAATCCGCTCGGTCCCTGCCGATCC
GCTTTGACTTGGGCGCGACCACGTTTCAGTTGTAGACGTTCGCGGACCGC
TCGCTCCTGGCGCCTGCGCAGCTTCTCCAGTGTCTCCTCGCTGGGTGGCG
CAGGTGCCACAGCCTCCTGGGAGCGTATGATGGTGCGCAGCTTCTCCAGC
GCATCGGCCAGGTTCATTTGCTGGGAGCGCGTAAGATCACTCTTGATGTA
AAAGTAGCCGTCTTTGGTAATCCGGTTTGCCAGCACCTTGAGCAGCTTCT
GGCGCGTCTGCTCGGGTATCCAGTCCGCTTGTGCCACCTTGAAGCGTACA
TCCACCTTGGTATTCACCGTGTTCACGTGCTGACCACCGGGTCCGGAGCT
CCTGCTGTAGGTGATCTCCAGTCGGTCCATGGGAATGAAGCCGCTGAACT
TGTCGCTGCCACTGGGCGGCGGGGGCGGCGTGTAGATTTGCAGTCGGGCG
CCGGGATAGATCTTGTCCAGGGATAAATCGCTCTTGTAGGAGAGCTGACG
ACCCAGAAGGTTGCCTGTGCCGCCTGAGGAGCTGCTCTGGCGCAGAACTC
TTATGAAGGCACTCGTAATTTTATTCATGTCGACTGATAACT

BS06454.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..612 628..17 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..725 628..17 3060 100 Minus
CG6094-RA 735 CG6094-RA 74..685 628..17 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507868 467..17 2255 100 Minus
2L 23513712 2L 10507194..10507355 628..467 810 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:50:24 has no hits.

BS06454.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:29 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:20:54 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:46 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 10..636 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:15 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..688 10..636 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:15 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 467..636 97 -> Minus
2L 10507419..10507871 10..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:46 Download gff for BS06454.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 467..636 97 -> Minus
arm_2L 10507419..10507871 10..466 99   Minus

BS06454.complete Sequence

644 bp (644 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635501

> BS06454.complete
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGTAGAAGCTTTCTAGACCAT

BS06454.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 612 CG6094-PB 1..612 17..628 3060 100 Plus
CG6094-RA 612 CG6094-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..725 17..628 3060 100 Plus
CG6094-RA 735 CG6094-RA 74..685 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507868 178..628 2255 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:52:16 has no hits.

BS06454.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:10 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:30 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 72..692 9..635 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:28 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..685 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:10 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 72..692 9..635 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:49 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..685 17..628 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:49 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507194..10507355 17..178 100 -> Plus
2L 10507419..10507868 179..628 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:28 Download gff for BS06454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507194..10507355 17..178 100 -> Plus
arm_2L 10507419..10507868 179..628 100   Plus

BS06454.pep Sequence

Translation from 16 to 627

> BS06454.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDL*

BS06454.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PB 203 CG6094-PB 1..203 1..203 1024 100 Plus
CG6094-PA 203 CG6094-PA 1..203 1..203 1024 100 Plus