Clone Sequence Records
BS06456.3prime Sequence
573 bp (572 high quality bases) assembled on 2005-12-03
> BS06456.3prime
ATGGTCTAGAAAGCTTCTAAAAGAGCGTGTCCTCGGCGCGAATATATTCG
CCGATATCCGACTGATGAAAGCATACGGTGGTCATGGGATCGGCGGTCTT
GCAGTCCGTTGTGGAACGCGCCAGGACGCCGAAGCCCAGAGGCAGGTCGT
TCATGGAGTAAACCACCACGCCCTGGTACTGGCCGGCGTTCTCCGTGATG
CGACCCAGTCCGGTTTTGGGTATGTGGTTGCCGTAGAGAAACTGCTGCTC
GAAGGAGGGCTTCACCCACACCTTGTACTGGGCGTAGGGCGCCAAGTAGT
AGAGCGCCGTGATATGGAACTTCAGTTTGTTGGTCTTGGAGAACTTGCCG
AAGCAGGTGCCCACGCACACCAGCTGCTTGTAGCCGAAGCACTCGCTCAG
CTTCAAAATCCGCTCCGAGACGTAGTAGACCCGATCCTTGTGCTCCCGAA
AGCAATATGTTCCATCTGGCCGGTCAATCAAATGCTTCACATTTGTGCCA
ATGTATTTGGACAGGTGCTCGAACAAGATCTTGGCACGTTCGTCGCTCAG
GCGTTTCATGTCGACTGATAACT
BS06456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 543 | CG7006-RA | 1..543 | 559..17 | 2615 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..632 | 559..16 | 2660 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851309 | 503..16 | 2380 | 99.2 | Minus |
| 3R | 32079331 | 3R | 24850715..24850770 | 559..504 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:14:08 has no hits.
BS06456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:34 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 17..559 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:00 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 17..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:17 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..632 | 16..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:12 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..632 | 16..559 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:12 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 504..559 | 100 | -> | Minus |
| 3R | 24850822..24851309 | 16..503 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:17 Download gff for
BS06456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676437..20676492 | 504..559 | 100 | -> | Minus |
| arm_3R | 20676544..20677031 | 16..503 | 99 | | Minus |
BS06456.5prime Sequence
565 bp (429 high quality bases) assembled on 2005-11-07
> BS06456.5prime
CATTCGACATGAAACGCCTGAGCGACAAACGTGCCAAGATCTTGTTCGAG
CACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATTGACCGGCC
AGATGGAACATATTGCTTTCGGGAGCACAAGGATCGGGTCTACTACGTCT
CGGATCGGATTTTGAAGCTGAGCGAGTGCTTCGGCTACCAGCAGCTGGTG
TGCGTGGGCACCTGCTTCGGCAAGTTCTCCAAGACCAACAAACTGAAATT
CCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTACAAGGTGT
GGGTGAAGCCCTCCTTCGAGCATCAGTTTCTCTACAGCAACCACATACCC
AAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTACCAGGGCGT
GGTGGATTACTCCATGAACGACCTGCCTCTGGGCTTCGGCGTCCTGTCGC
GCTCCACAACGGACTGCATGACCACCCATCCCATGACCACCGTATGCTTT
CATCACTCGGATATCGGCGAATATATTCGCGCCGAGGACACGCTCTTTTA
GAAGCTTTCTACACC
BS06456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 543 | CG7006-RA | 1..543 | 9..551 | 2290 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..632 | 9..552 | 2465 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851309 | 65..552 | 2200 | 96.7 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 9..64 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:15:52 has no hits.
BS06456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:35 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 9..551 | 96 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:02 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 9..551 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:56 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 83..632 | 1..552 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:59 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 83..632 | 1..552 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:59 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850709..24850770 | 1..64 | 92 | -> | Plus |
| 3R | 24850822..24851309 | 65..552 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:56 Download gff for
BS06456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676431..20676492 | 1..64 | 92 | -> | Plus |
| arm_3R | 20676544..20677031 | 65..552 | 96 | | Plus |
BS06456.complete Sequence
575 bp (575 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635502
> BS06456.complete
GAAGTTATCAGTCGACATGAAACGCCTGAGCGACGAACGTGCCAAGATCT
TGTTCGAGCACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATT
GACCGGCCAGATGGAACATATTGCTTTCGGGAGCACAAGGATCGGGTCTA
CTACGTCTCGGAGCGGATTTTGAAGCTGAGCGAGTGCTTCGGCTACAAGC
AGCTGGTGTGCGTGGGCACCTGCTTCGGCAAGTTCTCCAAGACCAACAAA
CTGAAGTTCCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTA
CAAGGTGTGGGTGAAGCCCTCCTTCGAGCAGCAGTTTCTCTACGGCAACC
ACATACCCAAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTAC
CAGGGCGTGGTGGTTTACTCCATGAACGACCTGCCTCTGGGCTTCGGCGT
CCTGGCGCGTTCCACAACGGACTGCAAGACCGCCGATCCCATGACCACCG
TATGCTTTCATCAGTCGGATATCGGCGAATATATTCGCGCCGAGGACACG
CTCTTTTAGAAGCTTTCTAGACCAT
BS06456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 543 | CG7006-PA | 1..543 | 17..559 | 2655 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..632 | 17..560 | 2660 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851309 | 73..560 | 2380 | 99.2 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:18:40 has no hits.
BS06456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:11 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:31 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 84..627 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:40 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..631 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:11 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 84..627 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:48 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..631 | 17..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:48 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 17..72 | 100 | -> | Plus |
| 3R | 24850822..24851308 | 73..559 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:40 Download gff for
BS06456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676544..20677030 | 73..559 | 99 | | Plus |
| arm_3R | 20676437..20676492 | 17..72 | 100 | -> | Plus |
BS06456.pep Sequence
Translation from 16 to 558
> BS06456.pep
MKRLSDERAKILFEHLSKYIGTNVKHLIDRPDGTYCFREHKDRVYYVSER
ILKLSECFGYKQLVCVGTCFGKFSKTNKLKFHITALYYLAPYAQYKVWVK
PSFEQQFLYGNHIPKTGLGRITENAGQYQGVVVYSMNDLPLGFGVLARST
TDCKTADPMTTVCFHQSDIGEYIRAEDTLF*
BS06456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 180 | CG7006-PA | 1..180 | 1..180 | 970 | 100 | Plus |
