Clone BS06457 Report

Search the DGRC for BS06457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptRpS5a-RA
Protein status:BS06457.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06457.3prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-03

> BS06457.3prime
ATGGTCTAGAAAGCTTTTAACGGTTGGACTTGGCGACACGCTCCAACTCA
TCCTTCTTCTTGATGGCGTACGAGTTGGAAGATCCCTTAGCAGCGTTGAT
CAGCTCATCAGCCAGGCACTCGGCGATGGTCTTGATGTTCCTGAAGGCAG
CCTCACGAGCTCCAGTGCACAGCAGCCAGATAGCCTGGTTGACGCGACGC
AGGGGCGACACATCGACGGCCTGGCGACGGACGGTACCGGCACGTCCAAT
ACGGGTGGAGTCCTCACGGGGTCCCGAGTTGATGATGGCGCTGACCAGGA
TCTGCAGAGGGTTCTCCCCGGTGAGCAGATGAATGATCTCGAACGAGTGC
TTGACGATGCGGCAGGCCATCAGCTTCTTGCCGTTGTTGCGACCCTTCAT
CATCAGGGAGCAGGTCAAACGCTCCACAATGGGGCACTGGGCCTTGCGGA
AACGCTTGGCGGCATAACGTCCGGCGGAATGGGGAAGATAGCGGGCAAAC
TTCTCCTTCACCGAGATGTAATCCTGCAGAGAGATGTCGTTAACGGTGAC
ATCGTCGCAAGACCAGCGGCCGAACAGCTTGATCTCCGGCAGCTCAGTGG
TGGACACCACATTTGTCTCCAGGATCGTCTCGGCCACCTCGGCTTCCATA
GGTGCCGCTGGCTCCTCGAAGGTCTCCACCACGTTTTCAGCAACTTCGGC
CATGTCGACTGATAACT

BS06457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8922-PA 687 RpS5a-RA 1..687 703..17 3435 100 Minus
CG7014-PA 693 RpS5b-RA 586..683 124..27 290 91.8 Minus
CG7014-PA 693 RpS5b-RA 202..290 508..420 170 87.6 Minus
CG7014-PA 693 RpS5b-RA 343..386 367..324 145 93.1 Minus
CG7014-PA 693 RpS5b-RA 484..527 226..183 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RA 864 CG8922-RA 61..749 705..17 3445 100 Minus
RpS5a-RD 809 CG8922-RD 7..694 704..17 3440 100 Minus
RpS5a-RC 1380 CG8922-RC 578..1265 704..17 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17146798..17147200 302..704 2015 100 Plus
3R 32079331 3R 14900952..14901358 184..590 970 82.6 Plus
X 23542271 X 17145015..17145137 184..306 615 100 Plus
3R 32079331 3R 14900527..14900697 17..187 540 87.7 Plus
X 23542271 X 17144617..17144718 85..186 510 100 Plus
X 23542271 X 17143703..17143773 17..87 355 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:56:28 has no hits.

BS06457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:36 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:04 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8922-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:47 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 61..749 17..705 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:59 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 61..749 17..705 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:59 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17145016..17145132 185..301 100 <- Plus
X 17143703..17143771 17..85 100 <- Plus
X 17144618..17144716 86..184 100 <- Plus
X 17146798..17147200 302..704 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:47 Download gff for BS06457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17037736..17037804 17..85 100 <- Plus
arm_X 17038651..17038749 86..184 100 <- Plus
arm_X 17039049..17039165 185..301 100 <- Plus
arm_X 17040831..17041233 302..704 100   Plus

BS06457.5prime Sequence

717 bp (716 high quality bases) assembled on 2005-12-03

> BS06457.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
TAAAAGCTTTCTAGACC

BS06457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8922-PA 687 RpS5a-RA 1..687 17..703 3435 100 Plus
CG7014-PA 693 RpS5b-RA 586..683 596..693 290 91.8 Plus
CG7014-PA 693 RpS5b-RA 202..290 212..300 170 87.6 Plus
CG7014-PA 693 RpS5b-RA 343..386 353..396 145 93.1 Plus
CG7014-PA 693 RpS5b-RA 484..527 494..537 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RA 864 CG8922-RA 61..749 15..703 3445 100 Plus
RpS5a-RD 809 CG8922-RD 7..694 16..703 3440 100 Plus
RpS5a-RC 1380 CG8922-RC 578..1265 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17146798..17147200 418..16 2015 100 Minus
3R 32079331 3R 14900952..14901358 536..130 970 82.6 Minus
X 23542271 X 17145015..17145137 536..414 615 100 Minus
3R 32079331 3R 14900527..14900697 703..533 540 87.7 Minus
X 23542271 X 17144617..17144718 635..534 510 100 Minus
X 23542271 X 17143703..17143773 703..633 355 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:40:23 has no hits.

BS06457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:37 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:05 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8922-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:46 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 61..749 15..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:21 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 61..749 15..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:21 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17143703..17143771 635..703 100 <- Minus
X 17144618..17144716 536..634 100 <- Minus
X 17145016..17145132 419..535 100 <- Minus
X 17146798..17147200 16..418 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:46 Download gff for BS06457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17037736..17037804 635..703 100 <- Minus
arm_X 17038651..17038749 536..634 100 <- Minus
arm_X 17039049..17039165 419..535 100 <- Minus
arm_X 17040831..17041233 16..418 100   Minus

BS06457.complete Sequence

719 bp (719 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ638793

> BS06457.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
TAAAAGCTTTCTAGACCAT

BS06457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RD 687 CG8922-PD 1..687 17..703 3435 100 Plus
RpS5a-RC 687 CG8922-PC 1..687 17..703 3435 100 Plus
RpS5a-RB 687 CG8922-PB 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RA 864 CG8922-RA 61..749 15..703 3445 100 Plus
RpS5a-RD 809 CG8922-RD 7..694 16..703 3440 100 Plus
RpS5a-RC 1380 CG8922-RC 578..1265 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17146798..17147200 418..16 2015 100 Minus
3R 32079331 3R 14900952..14901358 536..130 970 82.6 Minus
X 23542271 X 17145015..17145137 536..414 615 100 Minus
3R 32079331 3R 14900527..14900697 703..533 540 87.7 Minus
X 23542271 X 17144617..17144718 635..534 510 100 Minus
X 23542271 X 17143703..17143773 703..633 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:01:13 has no hits.

BS06457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:12 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:33 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 51..739 15..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:35 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 63..747 17..701 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:13 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 51..739 15..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:57 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 63..747 17..701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:57 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
X 17143705..17143771 635..701 100 <- Minus
X 17144618..17144716 536..634 100 <- Minus
X 17145016..17145132 419..535 100 <- Minus
X 17146798..17147199 17..418 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:35 Download gff for BS06457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17038651..17038749 536..634 100 <- Minus
arm_X 17039049..17039165 419..535 100 <- Minus
arm_X 17037738..17037804 635..701 100 <- Minus
arm_X 17040831..17041232 17..418 100   Minus

BS06457.pep Sequence

Translation from 16 to 702

> BS06457.pep
MAEVAENVVETFEEPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCD
DVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSL
MMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST
RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADE
LINAAKGSSNSYAIKKKDELERVAKSNR*

BS06457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-PD 228 CG8922-PD 1..228 1..228 1153 100 Plus
RpS5a-PC 228 CG8922-PC 1..228 1..228 1153 100 Plus
RpS5a-PB 228 CG8922-PB 1..228 1..228 1153 100 Plus
RpS5a-PA 228 CG8922-PA 1..228 1..228 1153 100 Plus
RpS5b-PA 230 CG7014-PA 1..230 4..228 929 79.1 Plus