Clone Sequence Records
BS06457.3prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-03
> BS06457.3prime
ATGGTCTAGAAAGCTTTTAACGGTTGGACTTGGCGACACGCTCCAACTCA
TCCTTCTTCTTGATGGCGTACGAGTTGGAAGATCCCTTAGCAGCGTTGAT
CAGCTCATCAGCCAGGCACTCGGCGATGGTCTTGATGTTCCTGAAGGCAG
CCTCACGAGCTCCAGTGCACAGCAGCCAGATAGCCTGGTTGACGCGACGC
AGGGGCGACACATCGACGGCCTGGCGACGGACGGTACCGGCACGTCCAAT
ACGGGTGGAGTCCTCACGGGGTCCCGAGTTGATGATGGCGCTGACCAGGA
TCTGCAGAGGGTTCTCCCCGGTGAGCAGATGAATGATCTCGAACGAGTGC
TTGACGATGCGGCAGGCCATCAGCTTCTTGCCGTTGTTGCGACCCTTCAT
CATCAGGGAGCAGGTCAAACGCTCCACAATGGGGCACTGGGCCTTGCGGA
AACGCTTGGCGGCATAACGTCCGGCGGAATGGGGAAGATAGCGGGCAAAC
TTCTCCTTCACCGAGATGTAATCCTGCAGAGAGATGTCGTTAACGGTGAC
ATCGTCGCAAGACCAGCGGCCGAACAGCTTGATCTCCGGCAGCTCAGTGG
TGGACACCACATTTGTCTCCAGGATCGTCTCGGCCACCTCGGCTTCCATA
GGTGCCGCTGGCTCCTCGAAGGTCTCCACCACGTTTTCAGCAACTTCGGC
CATGTCGACTGATAACT
BS06457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8922-PA | 687 | RpS5a-RA | 1..687 | 703..17 | 3435 | 100 | Minus |
CG7014-PA | 693 | RpS5b-RA | 586..683 | 124..27 | 290 | 91.8 | Minus |
CG7014-PA | 693 | RpS5b-RA | 202..290 | 508..420 | 170 | 87.6 | Minus |
CG7014-PA | 693 | RpS5b-RA | 343..386 | 367..324 | 145 | 93.1 | Minus |
CG7014-PA | 693 | RpS5b-RA | 484..527 | 226..183 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..749 | 705..17 | 3445 | 100 | Minus |
RpS5a-RD | 809 | CG8922-RD | 7..694 | 704..17 | 3440 | 100 | Minus |
RpS5a-RC | 1380 | CG8922-RC | 578..1265 | 704..17 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 302..704 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 14900952..14901358 | 184..590 | 970 | 82.6 | Plus |
X | 23542271 | X | 17145015..17145137 | 184..306 | 615 | 100 | Plus |
3R | 32079331 | 3R | 14900527..14900697 | 17..187 | 540 | 87.7 | Plus |
X | 23542271 | X | 17144617..17144718 | 85..186 | 510 | 100 | Plus |
X | 23542271 | X | 17143703..17143773 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:56:28 has no hits.
BS06457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:36 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:04 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8922-PA | 1..687 | 17..703 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:47 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..749 | 17..705 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:59 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..749 | 17..705 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:59 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17145016..17145132 | 185..301 | 100 | <- | Plus |
X | 17143703..17143771 | 17..85 | 100 | <- | Plus |
X | 17144618..17144716 | 86..184 | 100 | <- | Plus |
X | 17146798..17147200 | 302..704 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:47 Download gff for
BS06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17037736..17037804 | 17..85 | 100 | <- | Plus |
arm_X | 17038651..17038749 | 86..184 | 100 | <- | Plus |
arm_X | 17039049..17039165 | 185..301 | 100 | <- | Plus |
arm_X | 17040831..17041233 | 302..704 | 100 | | Plus |
BS06457.5prime Sequence
717 bp (716 high quality bases) assembled on 2005-12-03
> BS06457.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
TAAAAGCTTTCTAGACC
BS06457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8922-PA | 687 | RpS5a-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG7014-PA | 693 | RpS5b-RA | 586..683 | 596..693 | 290 | 91.8 | Plus |
CG7014-PA | 693 | RpS5b-RA | 202..290 | 212..300 | 170 | 87.6 | Plus |
CG7014-PA | 693 | RpS5b-RA | 343..386 | 353..396 | 145 | 93.1 | Plus |
CG7014-PA | 693 | RpS5b-RA | 484..527 | 494..537 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..749 | 15..703 | 3445 | 100 | Plus |
RpS5a-RD | 809 | CG8922-RD | 7..694 | 16..703 | 3440 | 100 | Plus |
RpS5a-RC | 1380 | CG8922-RC | 578..1265 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 418..16 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 14900952..14901358 | 536..130 | 970 | 82.6 | Minus |
X | 23542271 | X | 17145015..17145137 | 536..414 | 615 | 100 | Minus |
3R | 32079331 | 3R | 14900527..14900697 | 703..533 | 540 | 87.7 | Minus |
X | 23542271 | X | 17144617..17144718 | 635..534 | 510 | 100 | Minus |
X | 23542271 | X | 17143703..17143773 | 703..633 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:40:23 has no hits.
BS06457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:37 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:05 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8922-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:46 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..749 | 15..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:21 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 61..749 | 15..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:21 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17143703..17143771 | 635..703 | 100 | <- | Minus |
X | 17144618..17144716 | 536..634 | 100 | <- | Minus |
X | 17145016..17145132 | 419..535 | 100 | <- | Minus |
X | 17146798..17147200 | 16..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:46 Download gff for
BS06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17037736..17037804 | 635..703 | 100 | <- | Minus |
arm_X | 17038651..17038749 | 536..634 | 100 | <- | Minus |
arm_X | 17039049..17039165 | 419..535 | 100 | <- | Minus |
arm_X | 17040831..17041233 | 16..418 | 100 | | Minus |
BS06457.complete Sequence
719 bp (719 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ638793
> BS06457.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCT
TCGAGGAGCCAGCGGCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTG
GAGACAAATGTGGTGTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGG
CCGCTGGTCTTGCGACGATGTCACCGTTAACGACATCTCTCTGCAGGATT
ACATCTCGGTGAAGGAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGA
CGTTATGCCGCCAAGCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCG
TTTGACCTGCTCCCTGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGA
TGGCCTGCCGCATCGTCAAGCACTCGTTCGAGATCATTCATCTGCTCACC
GGGGAGAACCCTCTGCAGATCCTGGTCAGCGCCATCATCAACTCGGGACC
CCGTGAGGACTCCACCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGG
CCGTCGATGTGTCGCCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTG
TGCACTGGAGCTCGTGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGA
GTGCCTGGCTGATGAGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGT
ACGCCATCAAGAAGAAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGT
TAAAAGCTTTCTAGACCAT
BS06457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RD | 687 | CG8922-PD | 1..687 | 17..703 | 3435 | 100 | Plus |
RpS5a-RC | 687 | CG8922-PC | 1..687 | 17..703 | 3435 | 100 | Plus |
RpS5a-RB | 687 | CG8922-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-RA | 864 | CG8922-RA | 61..749 | 15..703 | 3445 | 100 | Plus |
RpS5a-RD | 809 | CG8922-RD | 7..694 | 16..703 | 3440 | 100 | Plus |
RpS5a-RC | 1380 | CG8922-RC | 578..1265 | 16..703 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17146798..17147200 | 418..16 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 14900952..14901358 | 536..130 | 970 | 82.6 | Minus |
X | 23542271 | X | 17145015..17145137 | 536..414 | 615 | 100 | Minus |
3R | 32079331 | 3R | 14900527..14900697 | 703..533 | 540 | 87.7 | Minus |
X | 23542271 | X | 17144617..17144718 | 635..534 | 510 | 100 | Minus |
X | 23542271 | X | 17143703..17143773 | 703..633 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:01:13 has no hits.
BS06457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:12 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:33 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 51..739 | 15..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:35 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 63..747 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:13 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 51..739 | 15..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:57 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5a-RA | 63..747 | 17..701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:57 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17143705..17143771 | 635..701 | 100 | <- | Minus |
X | 17144618..17144716 | 536..634 | 100 | <- | Minus |
X | 17145016..17145132 | 419..535 | 100 | <- | Minus |
X | 17146798..17147199 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:35 Download gff for
BS06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17038651..17038749 | 536..634 | 100 | <- | Minus |
arm_X | 17039049..17039165 | 419..535 | 100 | <- | Minus |
arm_X | 17037738..17037804 | 635..701 | 100 | <- | Minus |
arm_X | 17040831..17041232 | 17..418 | 100 | | Minus |
BS06457.pep Sequence
Translation from 16 to 702
> BS06457.pep
MAEVAENVVETFEEPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCD
DVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSL
MMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST
RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADE
LINAAKGSSNSYAIKKKDELERVAKSNR*
BS06457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5a-PD | 228 | CG8922-PD | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PC | 228 | CG8922-PC | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PB | 228 | CG8922-PB | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5a-PA | 228 | CG8922-PA | 1..228 | 1..228 | 1153 | 100 | Plus |
RpS5b-PA | 230 | CG7014-PA | 1..230 | 4..228 | 929 | 79.1 | Plus |