Clone Sequence Records
BS06458.3prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06458.3prime
ATGGTCTAGAAAGCTTCTACTTGGCACCCGGCTTTTTGGTGCCCACATCG
GCTGCCTTCTTTTCCGCCTCCCGCTTGGCGGCCGCCTCCTCGCGCTGCTG
CCGGATCAAAGCCAATCTGGCCAGATCGGCCTTAGCCTCGGTGGTTTTAC
CAGCAGCATGGAGTTTCTCGTAACGCTGGCGCGCTCTCTGCTTTTCGATC
TGTTCGCGTTCGCGGCGAGAAAGCTCCGGCTTGGGATTACCGCCGGCACC
GGCTGGCCCGTCGTCCAGCTTGATGGCCGATAGCTTTTGTGTGGCCTTCT
TGGTCACCCGGTTGGGATTCTCGATTTCGATGAGTGAGGCCACGCCCTTC
TTGGCATCGCGCGCTTCCGCTTCGGAGTCATCGTCGGAATCCTCGCCAGA
CTCCGATTCCGAGGAACTTGCCGCACCGGCGCCCGCCGCTGATCGAGACT
TTTGATTGCGATTCACGGGCGCTTTACGTGTGGCGGGTGCCTTGGCTTTG
GACGCAGAGGAACTGGCTTTGCCGCCGGCAGCGTCTTTATCGTCGCTATC
TGATCCCGAGCCGCTGGTCTGGTCGCTATCCTCCTCCGATTCCTGTTGCA
GTTCCTCGGGAGATGTGAAATGGCGACTGCGACCTTTGTGGTTGACGAAC
TTTCCTCGTGGCATGTCGACTGATAACT
BS06458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PA | 648 | CG11444-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
CG4438-PA | 570 | CG4438-RA | 410..497 | 177..90 | 190 | 88.6 | Minus |
CG4438-PA | 570 | CG4438-RA | 274..328 | 349..295 | 175 | 92.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1065 | 665..16 | 3250 | 100 | Minus |
CG11444-RA | 1081 | CG11444-RA | 215..864 | 665..16 | 3250 | 100 | Minus |
CG4438-RB | 922 | CG4438-RB | 571..745 | 190..16 | 440 | 83.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553334..4553983 | 16..665 | 3250 | 100 | Plus |
2L | 23513712 | 2L | 9397176..9397350 | 16..190 | 440 | 83.4 | Plus |
2L | 23513712 | 2L | 9397617..9397747 | 535..665 | 325 | 83.2 | Plus |
2L | 23513712 | 2L | 9397397..9397498 | 273..374 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:44:21 has no hits.
BS06458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:38 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:06 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..664 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:28 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..864 | 16..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..864 | 16..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553334..4553988 | 16..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:28 Download gff for
BS06458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447367..4448021 | 16..674 | 99 | | Plus |
BS06458.5prime Sequence
678 bp (677 high quality bases) assembled on 2005-12-03
> BS06458.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGTAGAAGCTTTCTAGACC
BS06458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PA | 648 | CG11444-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG4438-PA | 570 | CG4438-RA | 410..497 | 504..591 | 190 | 88.6 | Plus |
CG4438-PA | 570 | CG4438-RA | 274..328 | 332..386 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1065 | 16..665 | 3250 | 100 | Plus |
CG11444-RA | 1081 | CG11444-RA | 215..864 | 16..665 | 3250 | 100 | Plus |
CG4438-RB | 922 | CG4438-RB | 571..745 | 491..665 | 440 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553334..4553983 | 665..16 | 3250 | 100 | Minus |
2L | 23513712 | 2L | 9397176..9397350 | 665..491 | 440 | 83.4 | Minus |
2L | 23513712 | 2L | 9397617..9397747 | 146..16 | 325 | 83.2 | Minus |
2L | 23513712 | 2L | 9397397..9397498 | 408..307 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:24:28 has no hits.
BS06458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:39 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:08 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-PA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:45 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..864 | 7..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:35 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 206..864 | 7..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:35 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553334..4553988 | 7..665 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:45 Download gff for
BS06458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447367..4448021 | 7..665 | 99 | | Minus |
BS06458.complete Sequence
680 bp (680 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635503
> BS06458.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGTAGAAGCTTTCTAGACCAT
BS06458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 648 | CG11444-PB | 1..648 | 17..664 | 3240 | 100 | Plus |
CG11444-RA | 648 | CG11444-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG4438-RB | 570 | CG4438-PB | 397..570 | 491..664 | 435 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-RB | 1282 | CG11444-RB | 416..1065 | 16..665 | 3250 | 100 | Plus |
CG11444-RA | 1081 | CG11444-RA | 215..864 | 16..665 | 3250 | 100 | Plus |
CG4438-RB | 922 | CG4438-RB | 571..745 | 491..665 | 440 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4553334..4553983 | 665..16 | 3250 | 100 | Minus |
2L | 23513712 | 2L | 9397176..9397350 | 665..491 | 440 | 83.4 | Minus |
2L | 23513712 | 2L | 9397617..9397747 | 146..16 | 325 | 83.2 | Minus |
2L | 23513712 | 2L | 9397397..9397498 | 408..307 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:16:48 has no hits.
BS06458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:14 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 1..648 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:34 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 354..1012 | 7..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:04 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 216..863 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:14 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 354..1012 | 7..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:45 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11444-RA | 216..863 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:45 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4553335..4553982 | 17..664 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:04 Download gff for
BS06458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4447368..4448015 | 17..664 | 100 | | Minus |
BS06458.pep Sequence
Translation from 16 to 663
> BS06458.pep
MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQTSGSGSDSDDKDAAGGKA
SSSASKAKAPATRKAPVNRNQKSRSAAGAGAASSSESESGEDSDDDSEAE
ARDAKKGVASLIEIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSR
REREQIEKQRARQRYEKLHAAGKTTEAKADLARLALIRQQREEAAAKREA
EKKAADVGTKKPGAK*
BS06458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11444-PB | 215 | CG11444-PB | 1..215 | 1..215 | 1066 | 100 | Plus |
CG11444-PA | 215 | CG11444-PA | 1..215 | 1..215 | 1066 | 100 | Plus |
CG4438-PB | 189 | CG4438-PB | 1..189 | 1..215 | 573 | 62.3 | Plus |
CG4438-PA | 189 | CG4438-PA | 1..189 | 1..215 | 573 | 62.3 | Plus |