Clone BS06458 Report

Search the DGRC for BS06458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG11444-RA
Protein status:BS06458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06458.3prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06458.3prime
ATGGTCTAGAAAGCTTCTACTTGGCACCCGGCTTTTTGGTGCCCACATCG
GCTGCCTTCTTTTCCGCCTCCCGCTTGGCGGCCGCCTCCTCGCGCTGCTG
CCGGATCAAAGCCAATCTGGCCAGATCGGCCTTAGCCTCGGTGGTTTTAC
CAGCAGCATGGAGTTTCTCGTAACGCTGGCGCGCTCTCTGCTTTTCGATC
TGTTCGCGTTCGCGGCGAGAAAGCTCCGGCTTGGGATTACCGCCGGCACC
GGCTGGCCCGTCGTCCAGCTTGATGGCCGATAGCTTTTGTGTGGCCTTCT
TGGTCACCCGGTTGGGATTCTCGATTTCGATGAGTGAGGCCACGCCCTTC
TTGGCATCGCGCGCTTCCGCTTCGGAGTCATCGTCGGAATCCTCGCCAGA
CTCCGATTCCGAGGAACTTGCCGCACCGGCGCCCGCCGCTGATCGAGACT
TTTGATTGCGATTCACGGGCGCTTTACGTGTGGCGGGTGCCTTGGCTTTG
GACGCAGAGGAACTGGCTTTGCCGCCGGCAGCGTCTTTATCGTCGCTATC
TGATCCCGAGCCGCTGGTCTGGTCGCTATCCTCCTCCGATTCCTGTTGCA
GTTCCTCGGGAGATGTGAAATGGCGACTGCGACCTTTGTGGTTGACGAAC
TTTCCTCGTGGCATGTCGACTGATAACT

BS06458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PA 648 CG11444-RA 1..648 664..17 3240 100 Minus
CG4438-PA 570 CG4438-RA 410..497 177..90 190 88.6 Minus
CG4438-PA 570 CG4438-RA 274..328 349..295 175 92.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1065 665..16 3250 100 Minus
CG11444-RA 1081 CG11444-RA 215..864 665..16 3250 100 Minus
CG4438-RB 922 CG4438-RB 571..745 190..16 440 83.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553334..4553983 16..665 3250 100 Plus
2L 23513712 2L 9397176..9397350 16..190 440 83.4 Plus
2L 23513712 2L 9397617..9397747 535..665 325 83.2 Plus
2L 23513712 2L 9397397..9397498 273..374 255 83.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:44:21 has no hits.

BS06458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:38 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:06 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:28 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..864 16..674 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..864 16..674 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4553334..4553988 16..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:28 Download gff for BS06458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447367..4448021 16..674 99   Plus

BS06458.5prime Sequence

678 bp (677 high quality bases) assembled on 2005-12-03

> BS06458.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGTAGAAGCTTTCTAGACC

BS06458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PA 648 CG11444-RA 1..648 17..664 3240 100 Plus
CG4438-PA 570 CG4438-RA 410..497 504..591 190 88.6 Plus
CG4438-PA 570 CG4438-RA 274..328 332..386 175 92.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1065 16..665 3250 100 Plus
CG11444-RA 1081 CG11444-RA 215..864 16..665 3250 100 Plus
CG4438-RB 922 CG4438-RB 571..745 491..665 440 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553334..4553983 665..16 3250 100 Minus
2L 23513712 2L 9397176..9397350 665..491 440 83.4 Minus
2L 23513712 2L 9397617..9397747 146..16 325 83.2 Minus
2L 23513712 2L 9397397..9397498 408..307 255 83.3 Minus
Blast to na_te.dros performed on 2015-02-02 11:24:28 has no hits.

BS06458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:39 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:08 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:45 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..864 7..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:35 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 206..864 7..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:35 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4553334..4553988 7..665 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:45 Download gff for BS06458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447367..4448021 7..665 99   Minus

BS06458.complete Sequence

680 bp (680 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635503

> BS06458.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCGTCAACCACAAAGGTC
GCAGTCGCCATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAG
GATAGCGACCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGC
TGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCA
CACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGC
GCCGGTGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGA
TGACTCCGAAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCA
TCGAAATCGAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTA
TCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAA
GCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGC
GCCAGCGTTACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAG
GCCGATCTGGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGC
CGCCAAGCGGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAGC
CGGGTGCCAAGTAGAAGCTTTCTAGACCAT

BS06458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 648 CG11444-PB 1..648 17..664 3240 100 Plus
CG11444-RA 648 CG11444-PA 1..648 17..664 3240 100 Plus
CG4438-RB 570 CG4438-PB 397..570 491..664 435 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1065 16..665 3250 100 Plus
CG11444-RA 1081 CG11444-RA 215..864 16..665 3250 100 Plus
CG4438-RB 922 CG4438-RB 571..745 491..665 440 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553334..4553983 665..16 3250 100 Minus
2L 23513712 2L 9397176..9397350 665..491 440 83.4 Minus
2L 23513712 2L 9397617..9397747 146..16 325 83.2 Minus
2L 23513712 2L 9397397..9397498 408..307 255 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 08:16:48 has no hits.

BS06458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:14 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:34 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 354..1012 7..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:04 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 216..863 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:14 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 354..1012 7..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:45 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 216..863 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:45 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
X 4553335..4553982 17..664 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:04 Download gff for BS06458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447368..4448015 17..664 100   Minus

BS06458.pep Sequence

Translation from 16 to 663

> BS06458.pep
MPRGKFVNHKGRSRHFTSPEELQQESEEDSDQTSGSGSDSDDKDAAGGKA
SSSASKAKAPATRKAPVNRNQKSRSAAGAGAASSSESESGEDSDDDSEAE
ARDAKKGVASLIEIENPNRVTKKATQKLSAIKLDDGPAGAGGNPKPELSR
REREQIEKQRARQRYEKLHAAGKTTEAKADLARLALIRQQREEAAAKREA
EKKAADVGTKKPGAK*

BS06458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-PB 215 CG11444-PB 1..215 1..215 1066 100 Plus
CG11444-PA 215 CG11444-PA 1..215 1..215 1066 100 Plus
CG4438-PB 189 CG4438-PB 1..189 1..215 573 62.3 Plus
CG4438-PA 189 CG4438-PA 1..189 1..215 573 62.3 Plus