Clone BS06460 Report

Search the DGRC for BS06460

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptRpS23-RA
Protein status:BS06460.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06460.3prime Sequence

462 bp (461 high quality bases) assembled on 2005-12-03

> BS06460.3prime
ATGGTCTAGAAAGCTTCTAAGATCTTGGGCGTTCCTTCTTCTCCTTGTAG
AGGGCCAACAGGGAGACGTTGGCGACCTTGACAACCTTGAAGCGCACACC
GGGAATATCACCGACGGCATGACCCTTACGACCGAAACCGGCAACCAGGA
CCTCGTCGTTCTCCTCAATGTAGTTCAAGCTACCGTCACGGGGCACGAAG
GCGGTGATCTTCTTGCCGTTCTTGATGAGCTGCACCCTCACGCACTTGCG
GATGGCAGAGTTAGGCTGCTTGGCCTCGACGCCGACCTTCTCCAGGACGA
TTCCCTTGGCGTGGGAAGCACCTCCGAAGGGATTAGCCTTCCATCTGGTG
CCCAAATGAGCCTTCTTGTAGTCCTTGTCGGCCCAACGCTGGTCGCGACG
GTGGTTCACATGCTTCCTGGCAGTGCGCAGACCTCTTGGCTTGCCCATGT
CGACTGATAACT

BS06460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8415-PA 432 RpS23-RA 1..432 448..17 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..527 448..16 2165 100 Minus
RpS23-RB 553 CG8415-RB 46..478 448..16 2165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215434..14215702 16..284 1345 100 Plus
2R 25286936 2R 14215951..14216111 285..445 805 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:43:10 has no hits.

BS06460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:42 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-PA 1..432 17..448 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:11 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8415-PA 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:50 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..478 16..448 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:01 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..478 16..448 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:01 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14215434..14215702 16..284 100 <- Plus
2R 14215951..14216114 285..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:50 Download gff for BS06460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102939..10103207 16..284 100 <- Plus
arm_2R 10103456..10103619 285..450 98   Plus

BS06460.5prime Sequence

462 bp (461 high quality bases) assembled on 2005-12-03

> BS06460.5prime
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTTAGAA
GCTTTCTAGACC

BS06460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8415-PA 432 RpS23-RA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..527 17..449 2165 100 Plus
RpS23-RB 553 CG8415-RB 46..478 17..449 2165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215434..14215702 449..181 1345 100 Minus
2R 25286936 2R 14215951..14216111 180..20 805 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:38:06 has no hits.

BS06460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:43 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-PA 1..432 17..448 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:13 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8415-PA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:27 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..478 17..449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:05 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..478 17..449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:05 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14215434..14215702 181..449 100 <- Minus
2R 14215951..14216114 15..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:27 Download gff for BS06460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102939..10103207 181..449 100 <- Minus
arm_2R 10103456..10103619 15..180 98   Minus

BS06460.complete Sequence

464 bp (464 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635504

> BS06460.complete
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTTAGAA
GCTTTCTAGACCAT

BS06460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 432 CG8415-PA 1..432 17..448 2160 100 Plus
RpS23-RB 432 CG8415-PB 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..527 17..449 2165 100 Plus
RpS23-RB 553 CG8415-RB 46..478 17..449 2165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215434..14215702 449..181 1345 100 Minus
2R 25286936 2R 14215951..14216111 180..20 805 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:32:13 has no hits.

BS06460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:50 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:59 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 95..527 17..449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:28 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..477 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:50 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 95..527 17..449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:10 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..477 17..448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:10 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14215435..14215702 181..448 100 <- Minus
2R 14215951..14216112 17..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:28 Download gff for BS06460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102940..10103207 181..448 100 <- Minus
arm_2R 10103456..10103617 17..180 98   Minus

BS06460.pep Sequence

Translation from 16 to 447

> BS06460.pep
MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEV
LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS*

BS06460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-PA 143 CG8415-PA 1..143 1..143 747 100 Plus
RpS23-PB 143 CG8415-PB 1..143 1..143 747 100 Plus
tko-PB 140 CG7925-PB 42..127 31..124 138 39.4 Plus
tko-PC 154 CG7925-PC 56..141 31..124 138 39.4 Plus