Clone Sequence Records
BS06460.3prime Sequence
462 bp (461 high quality bases) assembled on 2005-12-03
> BS06460.3prime
ATGGTCTAGAAAGCTTCTAAGATCTTGGGCGTTCCTTCTTCTCCTTGTAG
AGGGCCAACAGGGAGACGTTGGCGACCTTGACAACCTTGAAGCGCACACC
GGGAATATCACCGACGGCATGACCCTTACGACCGAAACCGGCAACCAGGA
CCTCGTCGTTCTCCTCAATGTAGTTCAAGCTACCGTCACGGGGCACGAAG
GCGGTGATCTTCTTGCCGTTCTTGATGAGCTGCACCCTCACGCACTTGCG
GATGGCAGAGTTAGGCTGCTTGGCCTCGACGCCGACCTTCTCCAGGACGA
TTCCCTTGGCGTGGGAAGCACCTCCGAAGGGATTAGCCTTCCATCTGGTG
CCCAAATGAGCCTTCTTGTAGTCCTTGTCGGCCCAACGCTGGTCGCGACG
GTGGTTCACATGCTTCCTGGCAGTGCGCAGACCTCTTGGCTTGCCCATGT
CGACTGATAACT
BS06460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8415-PA | 432 | RpS23-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..527 | 448..16 | 2165 | 100 | Minus |
RpS23-RB | 553 | CG8415-RB | 46..478 | 448..16 | 2165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215434..14215702 | 16..284 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 14215951..14216111 | 285..445 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:43:10 has no hits.
BS06460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:42 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:11 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8415-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:50 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..478 | 16..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:01 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..478 | 16..448 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:01 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215434..14215702 | 16..284 | 100 | <- | Plus |
2R | 14215951..14216114 | 285..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:50 Download gff for
BS06460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102939..10103207 | 16..284 | 100 | <- | Plus |
arm_2R | 10103456..10103619 | 285..450 | 98 | | Plus |
BS06460.5prime Sequence
462 bp (461 high quality bases) assembled on 2005-12-03
> BS06460.5prime
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTTAGAA
GCTTTCTAGACC
BS06460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8415-PA | 432 | RpS23-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..527 | 17..449 | 2165 | 100 | Plus |
RpS23-RB | 553 | CG8415-RB | 46..478 | 17..449 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215434..14215702 | 449..181 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 14215951..14216111 | 180..20 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:38:06 has no hits.
BS06460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:43 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:13 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8415-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:27 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..478 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:05 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..478 | 17..449 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:05 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215434..14215702 | 181..449 | 100 | <- | Minus |
2R | 14215951..14216114 | 15..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:27 Download gff for
BS06460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102939..10103207 | 181..449 | 100 | <- | Minus |
arm_2R | 10103456..10103619 | 15..180 | 98 | | Minus |
BS06460.complete Sequence
464 bp (464 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635504
> BS06460.complete
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTTAGAA
GCTTTCTAGACCAT
BS06460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 432 | CG8415-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
RpS23-RB | 432 | CG8415-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..527 | 17..449 | 2165 | 100 | Plus |
RpS23-RB | 553 | CG8415-RB | 46..478 | 17..449 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215434..14215702 | 449..181 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 14215951..14216111 | 180..20 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:13 has no hits.
BS06460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:50 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:59 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 95..527 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:28 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..477 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:50 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 95..527 | 17..449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:10 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..477 | 17..448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:10 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215435..14215702 | 181..448 | 100 | <- | Minus |
2R | 14215951..14216112 | 17..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:28 Download gff for
BS06460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102940..10103207 | 181..448 | 100 | <- | Minus |
arm_2R | 10103456..10103617 | 17..180 | 98 | | Minus |
BS06460.pep Sequence
Translation from 16 to 447
> BS06460.pep
MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEV
LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS*
BS06460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-PA | 143 | CG8415-PA | 1..143 | 1..143 | 747 | 100 | Plus |
RpS23-PB | 143 | CG8415-PB | 1..143 | 1..143 | 747 | 100 | Plus |
tko-PB | 140 | CG7925-PB | 42..127 | 31..124 | 138 | 39.4 | Plus |
tko-PC | 154 | CG7925-PC | 56..141 | 31..124 | 138 | 39.4 | Plus |