Clone BS06461 Report

Search the DGRC for BS06461

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG3800-RA
Protein status:BS06461.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06461.5prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06461.5prime
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACTAGAAGCTTTCTAGACC

BS06461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-PA 498 CG3800-RA 1..498 17..514 2465 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-RB 2068 CG3800-RB 213..710 17..514 2475 99.8 Plus
CG3800-RA 2509 CG3800-RA 566..1063 17..514 2475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22936015..22936512 514..17 2475 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 12:59:52 has no hits.

BS06461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:45 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-PA 1..498 17..514 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:16 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-PA 1..498 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:21 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 559..1065 10..518 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:42:13 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 559..1065 10..518 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:42:13 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22936011..22936519 10..518 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:21 Download gff for BS06461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18823534..18824042 10..518 98   Minus

BS06461.3prime Sequence

528 bp (527 high quality bases) assembled on 2005-12-03

> BS06461.3prime
ATGGTCTAGAAAGCTTCTAGTTCCGTCCGCCCTTCTCGTCGCACTCGCGC
CTCAGATGTCCGCTCTTGCCGCAGCCGTAGCAAGTCTTCGAGGTCTCCGG
GCAGTTCTTGGAGATGTGTCCGGTGCGGTTGCACTTGTAGCACGACACAT
TGGTCGGTCCACGTTCGTTGACGGCCTCTGGGCAGTTGCGCACCCAGTGT
CCGGTCTTGTTGCAACGGTAGCAGGTCGGGTTGTCCGCCTGGGTGCAGTC
CTTCGAGATGTGCCCGATGCCGTTGCAGCGGTAGCAGCGCTCGGCCTCCT
CGGGGCAGGCACGTGCGAAGTGCCCAAATTGGTTGCATTTGTAGCACTTC
TCGCGGTTGCGACGCATGCCGCCGCCATCGTTGCCGCGCATACCGCCGCC
GCCGCCACCACCGCCTCCTCCAACGCCGCCCGGACCTCCGCCGCCGCCGA
GACTGCAGTCCCGGGCAAAGTGGCCCGGCCGGTTGCACTTGTAGCACGTG
GCAGACATCGACATGTCGACTGATAACT

BS06461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-PA 498 CG3800-RA 1..498 514..17 2465 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-RB 2068 CG3800-RB 213..710 514..17 2475 99.8 Minus
CG3800-RA 2509 CG3800-RA 566..1063 514..17 2475 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22936015..22936512 17..514 2475 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:15:52 has no hits.

BS06461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:44 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-PA 1..498 17..514 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:14 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-PA 1..498 17..514 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:42 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 559..1065 13..521 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:52 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 559..1065 13..521 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:52 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22936011..22936519 13..521 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:42 Download gff for BS06461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18823534..18824042 13..521 98   Plus

BS06461.complete Sequence

530 bp assembled on 2007-10-17

GenBank Submission: FJ635505

> BS06461.complete
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACTAGAAGCTTTCTAGACCAT

BS06461.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-RB 498 CG3800-PB 1..498 17..514 2475 99.8 Plus
CG3800-RA 498 CG3800-PA 1..498 17..514 2475 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-RB 2068 CG3800-RB 213..710 17..514 2475 99.8 Plus
CG3800-RA 2509 CG3800-RA 566..1063 17..514 2475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22936015..22936512 514..17 2475 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:45 has no hits.

BS06461.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:36 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 1..498 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:34 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 412..918 10..518 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:02 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 566..1063 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:53 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 419..916 17..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:52 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
CG3800-RA 566..1063 17..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:52 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22936015..22936512 17..514 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:02 Download gff for BS06461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18823538..18824035 17..514 99   Minus

BS06461.pep Sequence

Translation from 16 to 513

> BS06461.pep
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGM
RRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYR
CNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGK
SGHLRRECDEKGGRN*

BS06461.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3800-PB 165 CG3800-PB 1..165 1..165 977 100 Plus
CG3800-PA 165 CG3800-PA 1..165 1..165 977 100 Plus
x16-PB 257 CG10203-PB 81..141 14..81 173 54.4 Plus
x16-PA 258 CG10203-PA 81..136 14..76 168 55.6 Plus