Clone Sequence Records
BS06461.5prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06461.5prime
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACTAGAAGCTTTCTAGACC
BS06461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-PA | 498 | CG3800-RA | 1..498 | 17..514 | 2465 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-RB | 2068 | CG3800-RB | 213..710 | 17..514 | 2475 | 99.8 | Plus |
CG3800-RA | 2509 | CG3800-RA | 566..1063 | 17..514 | 2475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22936015..22936512 | 514..17 | 2475 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:59:52 has no hits.
BS06461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:45 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:16 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:06:21 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 559..1065 | 10..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:42:13 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 559..1065 | 10..518 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:42:13 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22936011..22936519 | 10..518 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:06:21 Download gff for
BS06461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18823534..18824042 | 10..518 | 98 | | Minus |
BS06461.3prime Sequence
528 bp (527 high quality bases) assembled on 2005-12-03
> BS06461.3prime
ATGGTCTAGAAAGCTTCTAGTTCCGTCCGCCCTTCTCGTCGCACTCGCGC
CTCAGATGTCCGCTCTTGCCGCAGCCGTAGCAAGTCTTCGAGGTCTCCGG
GCAGTTCTTGGAGATGTGTCCGGTGCGGTTGCACTTGTAGCACGACACAT
TGGTCGGTCCACGTTCGTTGACGGCCTCTGGGCAGTTGCGCACCCAGTGT
CCGGTCTTGTTGCAACGGTAGCAGGTCGGGTTGTCCGCCTGGGTGCAGTC
CTTCGAGATGTGCCCGATGCCGTTGCAGCGGTAGCAGCGCTCGGCCTCCT
CGGGGCAGGCACGTGCGAAGTGCCCAAATTGGTTGCATTTGTAGCACTTC
TCGCGGTTGCGACGCATGCCGCCGCCATCGTTGCCGCGCATACCGCCGCC
GCCGCCACCACCGCCTCCTCCAACGCCGCCCGGACCTCCGCCGCCGCCGA
GACTGCAGTCCCGGGCAAAGTGGCCCGGCCGGTTGCACTTGTAGCACGTG
GCAGACATCGACATGTCGACTGATAACT
BS06461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-PA | 498 | CG3800-RA | 1..498 | 514..17 | 2465 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-RB | 2068 | CG3800-RB | 213..710 | 514..17 | 2475 | 99.8 | Minus |
CG3800-RA | 2509 | CG3800-RA | 566..1063 | 514..17 | 2475 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22936015..22936512 | 17..514 | 2475 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:15:52 has no hits.
BS06461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:44 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-PA | 1..498 | 17..514 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:14 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-PA | 1..498 | 17..514 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:42 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 559..1065 | 13..521 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:52 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 559..1065 | 13..521 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:52 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22936011..22936519 | 13..521 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:42 Download gff for
BS06461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18823534..18824042 | 13..521 | 98 | | Plus |
BS06461.complete Sequence
530 bp assembled on 2007-10-17
GenBank Submission: FJ635505
> BS06461.complete
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACTAGAAGCTTTCTAGACCAT
BS06461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-RB | 498 | CG3800-PB | 1..498 | 17..514 | 2475 | 99.8 | Plus |
CG3800-RA | 498 | CG3800-PA | 1..498 | 17..514 | 2475 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-RB | 2068 | CG3800-RB | 213..710 | 17..514 | 2475 | 99.8 | Plus |
CG3800-RA | 2509 | CG3800-RA | 566..1063 | 17..514 | 2475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22936015..22936512 | 514..17 | 2475 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:45 has no hits.
BS06461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:36 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:34 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 412..918 | 10..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:02 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 566..1063 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:53 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 419..916 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:52 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3800-RA | 566..1063 | 17..514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:52 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22936015..22936512 | 17..514 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:02 Download gff for
BS06461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18823538..18824035 | 17..514 | 99 | | Minus |
BS06461.pep Sequence
Translation from 16 to 513
> BS06461.pep
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGM
RRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYR
CNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGK
SGHLRRECDEKGGRN*
BS06461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3800-PB | 165 | CG3800-PB | 1..165 | 1..165 | 977 | 100 | Plus |
CG3800-PA | 165 | CG3800-PA | 1..165 | 1..165 | 977 | 100 | Plus |
x16-PB | 257 | CG10203-PB | 81..141 | 14..81 | 173 | 54.4 | Plus |
x16-PA | 258 | CG10203-PA | 81..136 | 14..76 | 168 | 55.6 | Plus |