Clone BS06465 Report

Search the DGRC for BS06465

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG6543-RA
Protein status:BS06465.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06465.3prime Sequence

918 bp (825 high quality bases) assembled on 2005-12-03

> BS06465.3prime
ATGGTCTAGAAAGCTTTTACTCGTTGGTAAACTTGGCAGGGCGCTTCTCG
GCGAAAGCGGTCATGCCCTCCTTGCGATCGGCCGTGGAGAACGTGGCATG
GAAGGTGCGACGCTCGAACTTCAGGCCCTCTTGGAGAGTGGTCTCGTAAG
CCGTGTTAACCGCCTCCTTGCACAGCTGCACGATCAGATTGGAGTGGGTG
CCGATCTTCTCGCCCAGCTTGACGGCCTCGCCCAATAACTGGTCGGCGGG
CACCACCTTGCTGGCCAGACCCAGCTTCTCAGCCTCCTGGGCGCCGATCA
TATTGCCGGTGAGGCACATTTCCATGGCCTTGGACTTGCCAACGACGCGG
GTCAGACGCTGGGTGCCACCGGCACCGGGAATGGTGCCCAGGGCAATTTC
AGGCTGACCAAACTTGGCCTTGTCACCGGCATATATGATGTCGCACATCA
TGGCCAGCTCACAGCCACCGCCCAAGGCGTAACCATTCACGGCAGCAATG
ATGGGCTTCTGGGTGCGGGCCACCTCTGTCCAGTCGTTCAAGAAGTTGCC
CTGGATGCACTGCGAGTAGGTGTTGCCCACCATCTCCTTAATATCAGCGC
CAGCGGCGAAGGCCTTCTCGCTGCCCGTCAAAACGATGGCGGAGATGGTC
TTATCCTTGCTGAATTGCTGCAATGCGGTGGACAGCTCCTTCATCAGGCC
ATTGCAGAGGGCATTCAGGGCCTTGGGGCGGTTCAGGGTGATCACGCCTA
CGTTCTTGCCCTCGCCGGCCACTTCGGTCTTGATGTACTCCCAGTTGTTG
TTGGTGGAGGAGCTGCTGAAACGGGTGGCCACCTGTGGCTGACGGGCGGC
TGCCTGCANGACGCACTGGGCGCGGCTAGCGAAGATCTTAGCAATGTTGG
CCATGTCGACTGATAACT

BS06465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PB 888 CG6543-RB 1..888 904..17 4421 99.8 Minus
CG6543-PA 888 CG6543-RA 1..888 904..17 4421 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 61..949 904..16 4434 99.9 Minus
CG6543-RB 1124 CG6543-RB 134..1022 904..16 4434 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 82..807 3630 100 Plus
2R 25286936 2R 13854102..13854198 808..904 474 99 Plus
2R 25286936 2R 13853049..13853116 16..83 340 100 Plus
Blast to na_te.dros performed on 2015-02-01 08:32:43 has no hits.

BS06465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:50 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PB 1..888 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:22 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PA 1..888 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:03 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1026 12..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:09 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1026 12..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:09 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13853045..13853115 12..82 97 <- Plus
2R 13853181..13853905 83..807 100 <- Plus
2R 13854102..13854208 808..913 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:03 Download gff for BS06465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9740550..9740620 12..82 97 <- Plus
arm_2R 9740686..9741410 83..807 100 <- Plus
arm_2R 9741607..9741713 808..913 95   Plus

BS06465.5prime Sequence

889 bp (790 high quality bases) assembled on 2005-12-03

> BS06465.5prime
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGGAGCGCCCTGCCAAG

BS06465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PB 888 CG6543-RB 1..873 17..889 4340 99.8 Plus
CG6543-PA 888 CG6543-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 61..933 17..889 4350 99.9 Plus
CG6543-RB 1124 CG6543-RB 134..1006 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 839..114 3630 100 Minus
2R 25286936 2R 13854102..13854198 113..17 485 100 Minus
2R 25286936 2R 13853065..13853116 889..838 245 98.1 Minus
Blast to na_te.dros performed on 2015-02-13 08:32:37 has no hits.

BS06465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:51 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PB 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:24 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:04 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1006 8..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:00 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1006 8..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:00 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13853065..13853115 839..889 98 <- Minus
2R 13853181..13853905 114..838 100 <- Minus
2R 13854102..13854208 8..113 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:04 Download gff for BS06465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9741607..9741713 8..113 96   Minus
arm_2R 9740570..9740620 839..889 98 <- Minus
arm_2R 9740686..9741410 114..838 100 <- Minus

BS06465.complete Sequence

920 bp (920 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635506

> BS06465.complete
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GTAAAAGCTTTCTAGACCAT

BS06465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 888 CG6543-PA 1..888 17..904 4440 100 Plus
CG6543-RB 888 CG6543-PB 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 61..949 17..905 4445 100 Plus
CG6543-RB 1124 CG6543-RB 134..1022 17..905 4445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 839..114 3630 100 Minus
2R 25286936 2R 13854102..13854198 113..17 485 100 Minus
2R 25286936 2R 13853049..13853116 905..838 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:58:20 has no hits.

BS06465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:22 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:22 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 68..970 8..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:25 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 134..1019 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:22 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 68..970 8..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:01 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 134..1019 17..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:01 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13853052..13853115 839..902 100 <- Minus
2R 13853181..13853905 114..838 100 <- Minus
2R 13854102..13854198 17..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:25 Download gff for BS06465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9740557..9740620 839..902 100 <- Minus
arm_2R 9740686..9741410 114..838 100 <- Minus
arm_2R 9741607..9741703 17..113 100   Minus

BS06465.pep Sequence

Translation from 16 to 903

> BS06465.pep
MANIAKIFASRAQCVLQAAARQPQVATRFSSSSTNNNWEYIKTEVAGEGK
NVGVITLNRPKALNALCNGLMKELSTALQQFSKDKTISAIVLTGSEKAFA
AGADIKEMVGNTYSQCIQGNFLNDWTEVARTQKPIIAAVNGYALGGGCEL
AMMCDIIYAGDKAKFGQPEIALGTIPGAGGTQRLTRVVGKSKAMEMCLTG
NMIGAQEAEKLGLASKVVPADQLLGEAVKLGEKIGTHSNLIVQLCKEAVN
TAYETTLQEGLKFERRTFHATFSTADRKEGMTAFAEKRPAKFTNE*

BS06465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PA 295 CG6543-PA 1..295 1..295 1497 100 Plus
CG6543-PB 295 CG6543-PB 1..295 1..295 1497 100 Plus
CG8778-PA 299 CG8778-PA 7..299 11..295 376 34.5 Plus
CG6984-PA 285 CG6984-PA 38..285 48..295 297 28.9 Plus
CG5844-PA 378 CG5844-PA 47..269 42..269 259 29.7 Plus