Clone Sequence Records
BS06465.3prime Sequence
918 bp (825 high quality bases) assembled on 2005-12-03
> BS06465.3prime
ATGGTCTAGAAAGCTTTTACTCGTTGGTAAACTTGGCAGGGCGCTTCTCG
GCGAAAGCGGTCATGCCCTCCTTGCGATCGGCCGTGGAGAACGTGGCATG
GAAGGTGCGACGCTCGAACTTCAGGCCCTCTTGGAGAGTGGTCTCGTAAG
CCGTGTTAACCGCCTCCTTGCACAGCTGCACGATCAGATTGGAGTGGGTG
CCGATCTTCTCGCCCAGCTTGACGGCCTCGCCCAATAACTGGTCGGCGGG
CACCACCTTGCTGGCCAGACCCAGCTTCTCAGCCTCCTGGGCGCCGATCA
TATTGCCGGTGAGGCACATTTCCATGGCCTTGGACTTGCCAACGACGCGG
GTCAGACGCTGGGTGCCACCGGCACCGGGAATGGTGCCCAGGGCAATTTC
AGGCTGACCAAACTTGGCCTTGTCACCGGCATATATGATGTCGCACATCA
TGGCCAGCTCACAGCCACCGCCCAAGGCGTAACCATTCACGGCAGCAATG
ATGGGCTTCTGGGTGCGGGCCACCTCTGTCCAGTCGTTCAAGAAGTTGCC
CTGGATGCACTGCGAGTAGGTGTTGCCCACCATCTCCTTAATATCAGCGC
CAGCGGCGAAGGCCTTCTCGCTGCCCGTCAAAACGATGGCGGAGATGGTC
TTATCCTTGCTGAATTGCTGCAATGCGGTGGACAGCTCCTTCATCAGGCC
ATTGCAGAGGGCATTCAGGGCCTTGGGGCGGTTCAGGGTGATCACGCCTA
CGTTCTTGCCCTCGCCGGCCACTTCGGTCTTGATGTACTCCCAGTTGTTG
TTGGTGGAGGAGCTGCTGAAACGGGTGGCCACCTGTGGCTGACGGGCGGC
TGCCTGCANGACGCACTGGGCGCGGCTAGCGAAGATCTTAGCAATGTTGG
CCATGTCGACTGATAACT
BS06465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PB | 888 | CG6543-RB | 1..888 | 904..17 | 4421 | 99.8 | Minus |
CG6543-PA | 888 | CG6543-RA | 1..888 | 904..17 | 4421 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 61..949 | 904..16 | 4434 | 99.9 | Minus |
CG6543-RB | 1124 | CG6543-RB | 134..1022 | 904..16 | 4434 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 82..807 | 3630 | 100 | Plus |
2R | 25286936 | 2R | 13854102..13854198 | 808..904 | 474 | 99 | Plus |
2R | 25286936 | 2R | 13853049..13853116 | 16..83 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:32:43 has no hits.
BS06465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:50 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PB | 1..888 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:22 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PA | 1..888 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:26:03 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1026 | 12..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:09 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1026 | 12..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:09 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853045..13853115 | 12..82 | 97 | <- | Plus |
2R | 13853181..13853905 | 83..807 | 100 | <- | Plus |
2R | 13854102..13854208 | 808..913 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:26:03 Download gff for
BS06465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9740550..9740620 | 12..82 | 97 | <- | Plus |
arm_2R | 9740686..9741410 | 83..807 | 100 | <- | Plus |
arm_2R | 9741607..9741713 | 808..913 | 95 | | Plus |
BS06465.5prime Sequence
889 bp (790 high quality bases) assembled on 2005-12-03
> BS06465.5prime
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGGAGCGCCCTGCCAAG
BS06465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PB | 888 | CG6543-RB | 1..873 | 17..889 | 4340 | 99.8 | Plus |
CG6543-PA | 888 | CG6543-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 61..933 | 17..889 | 4350 | 99.9 | Plus |
CG6543-RB | 1124 | CG6543-RB | 134..1006 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 839..114 | 3630 | 100 | Minus |
2R | 25286936 | 2R | 13854102..13854198 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 13853065..13853116 | 889..838 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:32:37 has no hits.
BS06465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:51 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PB | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:24 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:04 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1006 | 8..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:30:00 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1006 | 8..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:30:00 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853065..13853115 | 839..889 | 98 | <- | Minus |
2R | 13853181..13853905 | 114..838 | 100 | <- | Minus |
2R | 13854102..13854208 | 8..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:04 Download gff for
BS06465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9741607..9741713 | 8..113 | 96 | | Minus |
arm_2R | 9740570..9740620 | 839..889 | 98 | <- | Minus |
arm_2R | 9740686..9741410 | 114..838 | 100 | <- | Minus |
BS06465.complete Sequence
920 bp (920 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635506
> BS06465.complete
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GTAAAAGCTTTCTAGACCAT
BS06465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 888 | CG6543-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
CG6543-RB | 888 | CG6543-PB | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 61..949 | 17..905 | 4445 | 100 | Plus |
CG6543-RB | 1124 | CG6543-RB | 134..1022 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 839..114 | 3630 | 100 | Minus |
2R | 25286936 | 2R | 13854102..13854198 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 13853049..13853116 | 905..838 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:58:20 has no hits.
BS06465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:22 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:22 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 68..970 | 8..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:25 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 134..1019 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:22 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 68..970 | 8..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:01 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 134..1019 | 17..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:01 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853052..13853115 | 839..902 | 100 | <- | Minus |
2R | 13853181..13853905 | 114..838 | 100 | <- | Minus |
2R | 13854102..13854198 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:25 Download gff for
BS06465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9740557..9740620 | 839..902 | 100 | <- | Minus |
arm_2R | 9740686..9741410 | 114..838 | 100 | <- | Minus |
arm_2R | 9741607..9741703 | 17..113 | 100 | | Minus |
BS06465.pep Sequence
Translation from 16 to 903
> BS06465.pep
MANIAKIFASRAQCVLQAAARQPQVATRFSSSSTNNNWEYIKTEVAGEGK
NVGVITLNRPKALNALCNGLMKELSTALQQFSKDKTISAIVLTGSEKAFA
AGADIKEMVGNTYSQCIQGNFLNDWTEVARTQKPIIAAVNGYALGGGCEL
AMMCDIIYAGDKAKFGQPEIALGTIPGAGGTQRLTRVVGKSKAMEMCLTG
NMIGAQEAEKLGLASKVVPADQLLGEAVKLGEKIGTHSNLIVQLCKEAVN
TAYETTLQEGLKFERRTFHATFSTADRKEGMTAFAEKRPAKFTNE*
BS06465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PA | 295 | CG6543-PA | 1..295 | 1..295 | 1497 | 100 | Plus |
CG6543-PB | 295 | CG6543-PB | 1..295 | 1..295 | 1497 | 100 | Plus |
CG8778-PA | 299 | CG8778-PA | 7..299 | 11..295 | 376 | 34.5 | Plus |
CG6984-PA | 285 | CG6984-PA | 38..285 | 48..295 | 297 | 28.9 | Plus |
CG5844-PA | 378 | CG5844-PA | 47..269 | 42..269 | 259 | 29.7 | Plus |