Clone Sequence Records
BS06466.3prime Sequence
886 bp (846 high quality bases) assembled on 2005-12-03
> BS06466.3prime
ATGGTCTAGAAAGCTTTCAGCTGCTCCTCGCCTTCTTGTTGGCCTTGATC
AGCTTGGCCTTCAGGGCCTTCACGTCCACCTTGCTGGAGGAGGAGCCATC
CTCCTTCTTCCGACTTGAAGCAGCTGACTCCTCCGTGGGCGGGACAAAGT
CCTTGTTTCGGCGTTCGTCCTGGCGCTTGGCCGCCTCCTTCTGCTTTTCG
GTGCGCTCCTGGTTGCGCTTCGCTTGCTTCTGCTCCTGGTTGAGGAAGTA
CTCTCCGCTGGCCAGCTGCTTGTCCACCTTGCTCTCCGGCTGGCTGGGCG
GGAATGGGGTGTACTCCTTCTTTTGCTTCTTGACCTTCGGCTGCTTGCGT
TTGCTAATGTTTTTGTTCTTGAACTTGGGCAGGAATCGGGACCAGTCCTC
GTTGGCCAGACGCGGATCCTTCATCAGCTCCCGCTTGATCATCAGAGCCT
TAATGTTGTATATGGGGTGCACATTGTTCATGGTCTCCAGGACTATATCC
CGCACCTGCTGAAGGCCCTTGTAAGGACCCAAGGCGGAGACTGTGTTTCC
TTGAACCAAAACGTAGCAATCGGTGAGCAGTTCAATGGACTTAAGGGTGG
CGCCGTTAGGTCCGATCAAACGCTGTCGCCGCTTCACGAACTTCTCCTTC
TTGTGCACAAGGTTTCCGATTTTGATGATGTCACACCCAATGTCGTCCTG
CAGGACCCGCTTGGCCTGCTCGAAGGGAACACTTCTGGCCATCAGCTTGA
TCATATCCCGCGCCTTGATGATGATGTAGGGATCCCAGGTCTTGCGACTG
GTCTTCACCACCATGCTCCCCTCCATCAAATCTAGCTCCGCCTTCAGGTG
GTGCTCCGCCAAGCACTGCTCCACCAGAGGCCAAAC
BS06466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4258-PA | 1038 | dbe-RA | 169..1038 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbe-RA | 1185 | CG4258-RA | 250..1127 | 886..9 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 868731..869608 | 9..886 | 4360 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:55:23 has no hits.
BS06466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:52 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-PA | 169..1038 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:25 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4258-PA | 169..1038 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:23 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 250..1131 | 6..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:44 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 250..1131 | 6..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:44 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 868727..869608 | 6..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:23 Download gff for
BS06466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 868727..869608 | 6..886 | 99 | | Plus |
BS06466.5prime Sequence
839 bp (822 high quality bases) assembled on 2005-12-03
> BS06466.5prime
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTTCCCTCACCAGGAGC
BS06466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4258-PA | 1038 | dbe-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbe-RA | 1185 | CG4258-RA | 82..904 | 17..839 | 4070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 868954..869776 | 839..17 | 4070 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:10:28 has no hits.
BS06466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:53 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:27 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4258-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:18:02 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 75..904 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:08 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 75..904 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:08 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 868954..869783 | 10..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:18:02 Download gff for
BS06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 868954..869783 | 10..839 | 99 | | Minus |
BS06466.complete Sequence
1070 bp (1070 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635507
> BS06466.complete
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTTCCTCAACCAGGAGCAGAAGCAAGCG
AAGCGCAACCAGGAGCGCACCGAAAAGCAGAAGGAGGCGGCCAAGCGCCA
GGACGAACGCCGAAACAAGGACTTTGTCCCGCCCACGGAGGAGTCAGCTG
CTTCAAGTCGGAAGAAGGAGGATGGCTCCTCCTCCAGCAAGGTGGACGTG
AAGGCCCTGAAGGCCAAGCTGATCAAGGCCAACAAGAAGGCGAGGAGCAG
CTGAAAGCTTTCTAGACCAT
BS06466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbe-RA | 1038 | CG4258-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbe-RA | 1185 | CG4258-RA | 82..1127 | 17..1062 | 5200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 868731..869776 | 1062..17 | 5200 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:17 has no hits.
BS06466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:56 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:13 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 129..1185 | 10..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:38 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 82..1118 | 17..1053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:56 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 129..1185 | 10..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:36 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbe-RA | 82..1118 | 17..1053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:36 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 868740..869776 | 17..1053 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:38 Download gff for
BS06466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 868740..869776 | 17..1053 | 100 | | Minus |
BS06466.pep Sequence
Translation from 16 to 1053
> BS06466.pep
MSESEAEETKISTEPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYR
ERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARD
MIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPN
GATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYN
IKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTP
FPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN
KDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKKARSS*
BS06466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbe-PA | 345 | CG4258-PA | 1..345 | 1..345 | 1770 | 100 | Plus |
