Clone BS06467 Report

Search the DGRC for BS06467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG7298-RA
Protein status:BS06467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06467.3prime Sequence

930 bp (854 high quality bases) assembled on 2005-12-03

> BS06467.3prime
ATGGTCTAGAAAGCTTTTATTCGGCATCGGTCGTACTATTATCGGTTTCT
TCTGATCCTTCGGCGGTGGCTCCTTTGCAGGCTCCGTTCAATGGCACATA
TGTGGACAGGTCGTCGTCGGACTTGCATCCCTGACGTGACTCATCGAAGA
ATGTATCGGCCGGGCAGGTGTTCAAAGTGGCCTCGCCCTGGCTGTTGCAA
TAGTAGTAGGTGGAGCAGTTATTCGAATCGACGGCGTTTACAAACGTCGA
CGTAGCATACTGGCATCGATTGCATCCCGCCACCGGAGTGGCGACCTGGC
GGGACACACAGTACCCTAAACTGTCGTCGTAGTAGTCGCCAGTGGGGCAG
TAGGTGGCCACATTTTTGCCGTTCGTGCACACATAATAGGTGCCACACAC
CTTGGGATCGGCTGACTTGGCACCGTTCGTGGAGCAGGAAACTGCGGCAT
CGCTCAGCGGAATGTTGGTCACACGGCTGCAGACGGAGGCACTTTCGTAG
GTACATTGATTGGCGAGCACGTTGTATGCAGTTTGATTGTTTGCAGAGCA
TTTACCCGACTGCAAAACGAGTCCGGTGGAGGTGGACTCGCAGTAGTGCC
AGGTGGAGCAGCTCTCAGTATCGCCGAAATATTGGCCAGGTGGCACGACA
TCGCATAGTGATTCTAGCACGGTTTCATTAGTACCTTGAGTGTTGGAGCA
GGTTCCATAAACGCAGGCGAGTGTGGTGGTATCGAATTTCTGGTTCACCG
GGCAGTTTCCGGAGCCCGCCGACTTGCCCTCAAGGCAGTAGAACCATCCA
CCACAAACGGCAGTGTTTGGCACCCAGGTGTTATTCTTGCCAGCACAGGG
ATTCTCAACGCCCCAATAGCAGTCCACCTCGCTGCTTGGATAGCAGGAGG
ATCTCTTGTAGTCGTACGAGTAGCCTGATT

BS06467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-PA 1110 CG7298-RA 197..1110 930..17 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-RA 1323 CG7298-RA 282..1195 930..17 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20202198..20202710 17..529 2565 100 Plus
3L 28110227 3L 20202913..20203314 529..930 2010 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:56:16 has no hits.

BS06467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:54 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-PA 197..1110 17..930 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:28 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-PA 197..1110 17..930 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:45 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 282..1197 13..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:58 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 282..1197 13..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:58 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20202196..20202710 13..529 99 <- Plus
3L 20202914..20203314 530..930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:45 Download gff for BS06467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20195296..20195810 13..529 99 <- Plus
arm_3L 20196014..20196414 530..930 100   Plus

BS06467.5prime Sequence

914 bp (774 high quality bases) assembled on 2005-12-03

> BS06467.5prime
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGGATGCATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCG

BS06467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-PA 1110 CG7298-RA 1..851 17..867 4255 100 Plus
CG7298-PA 1110 CG7298-RA 857..898 873..914 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-RA 1323 CG7298-RA 86..983 17..914 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20202913..20203506 614..21 2970 100 Minus
3L 28110227 3L 20202410..20202710 914..614 1430 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 06:08:28 has no hits.

BS06467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:55 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:29 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:53 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 86..983 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:11 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 86..983 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:11 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20202410..20202710 614..914 99 <- Minus
3L 20202914..20203508 18..613 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:53 Download gff for BS06467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20195510..20195810 614..914 99 <- Minus
arm_3L 20196014..20196608 18..613 99   Minus

BS06467.complete Sequence

1142 bp (1142 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ638794

> BS06467.complete
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCGATTCGAATAACTGCTCCACCTACTACTATTGCAACA
GCCAGGGCGAGGCCACTTTGAACACCTGCCCGGCCGATACATTCTTCGAT
GAGTCACGTCAGGGATGCAAGTCCGACGACGACCTGTCCACATATGTGCC
ATTGAACGGAGCCTGCAAAGGAGCCACCGCCGAAGGATCAGAAGAAACCG
ATAATAGTACGACCGATGCCGAATAAAAGCTTTCTAGACCAT

BS06467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-RA 1110 CG7298-PA 1..1110 17..1126 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-RA 1323 CG7298-RA 86..1195 17..1126 5550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20202913..20203506 614..21 2970 100 Minus
3L 28110227 3L 20202198..20202710 1126..614 2565 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:04:12 has no hits.

BS06467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:57 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 17..1126 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:15 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 85..1196 17..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:40 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 86..1193 17..1124 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:58 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 85..1196 17..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:54 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 86..1193 17..1124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:54 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20202200..20202710 614..1124 100 <- Minus
3L 20202914..20203508 17..613 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:40 Download gff for BS06467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20195300..20195810 614..1124 100 <- Minus
arm_3L 20196014..20196608 17..613 99   Minus

BS06467.pep Sequence

Translation from 16 to 1125

> BS06467.pep
MTGKLLLATILCLMGGQALGDAILEGNYNVTAVCTAVKVGTQLGSIESCQ
TYYVCQSTGPVQSSCQSGYSYDYKRSSCYPSSEVDCYWGVENPCAGKNNT
WVPNTAVCGGWFYCLEGKSAGSGNCPVNQKFDTTTLACVYGTCSNTQGTN
ETVLESLCDVVPPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSANNQTA
YNVLANQCTYESASVCSRVTNIPLSDAAVSCSTNGAKSADPKVCGTYYVC
TNGKNVATYCPTGDYYDDSLGYCVSRQVATPVAGCNRCQYATSTFVNAVD
SNNCSTYYYCNSQGEATLNTCPADTFFDESRQGCKSDDDLSTYVPLNGAC
KGATAEGSEETDNSTTDAE*

BS06467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-PA 369 CG7298-PA 1..369 1..369 2036 100 Plus
CG7290-PB 419 CG7290-PB 6..359 8..368 526 33.8 Plus
CG7290-PA 419 CG7290-PA 6..359 8..368 526 33.8 Plus
CG6996-PC 364 CG6996-PC 23..353 28..366 309 27.6 Plus
CG17147-PB 337 CG17147-PB 14..325 5..336 308 27.4 Plus