Clone Sequence Records
BS06467.3prime Sequence
930 bp (854 high quality bases) assembled on 2005-12-03
> BS06467.3prime
ATGGTCTAGAAAGCTTTTATTCGGCATCGGTCGTACTATTATCGGTTTCT
TCTGATCCTTCGGCGGTGGCTCCTTTGCAGGCTCCGTTCAATGGCACATA
TGTGGACAGGTCGTCGTCGGACTTGCATCCCTGACGTGACTCATCGAAGA
ATGTATCGGCCGGGCAGGTGTTCAAAGTGGCCTCGCCCTGGCTGTTGCAA
TAGTAGTAGGTGGAGCAGTTATTCGAATCGACGGCGTTTACAAACGTCGA
CGTAGCATACTGGCATCGATTGCATCCCGCCACCGGAGTGGCGACCTGGC
GGGACACACAGTACCCTAAACTGTCGTCGTAGTAGTCGCCAGTGGGGCAG
TAGGTGGCCACATTTTTGCCGTTCGTGCACACATAATAGGTGCCACACAC
CTTGGGATCGGCTGACTTGGCACCGTTCGTGGAGCAGGAAACTGCGGCAT
CGCTCAGCGGAATGTTGGTCACACGGCTGCAGACGGAGGCACTTTCGTAG
GTACATTGATTGGCGAGCACGTTGTATGCAGTTTGATTGTTTGCAGAGCA
TTTACCCGACTGCAAAACGAGTCCGGTGGAGGTGGACTCGCAGTAGTGCC
AGGTGGAGCAGCTCTCAGTATCGCCGAAATATTGGCCAGGTGGCACGACA
TCGCATAGTGATTCTAGCACGGTTTCATTAGTACCTTGAGTGTTGGAGCA
GGTTCCATAAACGCAGGCGAGTGTGGTGGTATCGAATTTCTGGTTCACCG
GGCAGTTTCCGGAGCCCGCCGACTTGCCCTCAAGGCAGTAGAACCATCCA
CCACAAACGGCAGTGTTTGGCACCCAGGTGTTATTCTTGCCAGCACAGGG
ATTCTCAACGCCCCAATAGCAGTCCACCTCGCTGCTTGGATAGCAGGAGG
ATCTCTTGTAGTCGTACGAGTAGCCTGATT
BS06467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-PA | 1110 | CG7298-RA | 197..1110 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-RA | 1323 | CG7298-RA | 282..1195 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20202198..20202710 | 17..529 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 20202913..20203314 | 529..930 | 2010 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:56:16 has no hits.
BS06467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:54 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-PA | 197..1110 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:28 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-PA | 197..1110 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:45 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 282..1197 | 13..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:58 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 282..1197 | 13..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:58 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20202196..20202710 | 13..529 | 99 | <- | Plus |
3L | 20202914..20203314 | 530..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:45 Download gff for
BS06467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20195296..20195810 | 13..529 | 99 | <- | Plus |
arm_3L | 20196014..20196414 | 530..930 | 100 | | Plus |
BS06467.5prime Sequence
914 bp (774 high quality bases) assembled on 2005-12-03
> BS06467.5prime
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGGATGCATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCG
BS06467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-PA | 1110 | CG7298-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG7298-PA | 1110 | CG7298-RA | 857..898 | 873..914 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-RA | 1323 | CG7298-RA | 86..983 | 17..914 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20202913..20203506 | 614..21 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 20202410..20202710 | 914..614 | 1430 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:08:28 has no hits.
BS06467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:55 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:29 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:53 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 86..983 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:11 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 86..983 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:11 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20202410..20202710 | 614..914 | 99 | <- | Minus |
3L | 20202914..20203508 | 18..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:53 Download gff for
BS06467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20195510..20195810 | 614..914 | 99 | <- | Minus |
arm_3L | 20196014..20196608 | 18..613 | 99 | | Minus |
BS06467.complete Sequence
1142 bp (1142 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ638794
> BS06467.complete
GAAGTTATCAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGT
GCCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTAC
AACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAG
CATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGC
AGTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGC
TATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGC
TGGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGT
TCTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAAC
CAGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAA
CACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGC
CACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTAC
TGCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGC
AAACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAA
GTGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCA
GTTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGG
CACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCA
CTGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTC
GCCACTCCGGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTT
TGTAAACGCCGTCGATTCGAATAACTGCTCCACCTACTACTATTGCAACA
GCCAGGGCGAGGCCACTTTGAACACCTGCCCGGCCGATACATTCTTCGAT
GAGTCACGTCAGGGATGCAAGTCCGACGACGACCTGTCCACATATGTGCC
ATTGAACGGAGCCTGCAAAGGAGCCACCGCCGAAGGATCAGAAGAAACCG
ATAATAGTACGACCGATGCCGAATAAAAGCTTTCTAGACCAT
BS06467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-RA | 1110 | CG7298-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-RA | 1323 | CG7298-RA | 86..1195 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20202913..20203506 | 614..21 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 20202198..20202710 | 1126..614 | 2565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:04:12 has no hits.
BS06467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:57 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:15 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 85..1196 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:40 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 86..1193 | 17..1124 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:58 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 85..1196 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:54 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7298-RA | 86..1193 | 17..1124 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:54 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20202200..20202710 | 614..1124 | 100 | <- | Minus |
3L | 20202914..20203508 | 17..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:40 Download gff for
BS06467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20195300..20195810 | 614..1124 | 100 | <- | Minus |
arm_3L | 20196014..20196608 | 17..613 | 99 | | Minus |
BS06467.pep Sequence
Translation from 16 to 1125
> BS06467.pep
MTGKLLLATILCLMGGQALGDAILEGNYNVTAVCTAVKVGTQLGSIESCQ
TYYVCQSTGPVQSSCQSGYSYDYKRSSCYPSSEVDCYWGVENPCAGKNNT
WVPNTAVCGGWFYCLEGKSAGSGNCPVNQKFDTTTLACVYGTCSNTQGTN
ETVLESLCDVVPPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSANNQTA
YNVLANQCTYESASVCSRVTNIPLSDAAVSCSTNGAKSADPKVCGTYYVC
TNGKNVATYCPTGDYYDDSLGYCVSRQVATPVAGCNRCQYATSTFVNAVD
SNNCSTYYYCNSQGEATLNTCPADTFFDESRQGCKSDDDLSTYVPLNGAC
KGATAEGSEETDNSTTDAE*
BS06467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7298-PA | 369 | CG7298-PA | 1..369 | 1..369 | 2036 | 100 | Plus |
CG7290-PB | 419 | CG7290-PB | 6..359 | 8..368 | 526 | 33.8 | Plus |
CG7290-PA | 419 | CG7290-PA | 6..359 | 8..368 | 526 | 33.8 | Plus |
CG6996-PC | 364 | CG6996-PC | 23..353 | 28..366 | 309 | 27.6 | Plus |
CG17147-PB | 337 | CG17147-PB | 14..325 | 5..336 | 308 | 27.4 | Plus |