Clone BS06468 Report

Search the DGRC for BS06468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0320-RA
Protein status:BS06468.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06468.3prime Sequence

891 bp (810 high quality bases) assembled on 2005-12-03

> BS06468.3prime
ATGGTCTAGAAAGCTTTTAATCATCGCCAGCGGAACGCTTGACCTTGCGC
TGCTTGGGACTCTGCTGGCTGGCCGCCTTGGGACTGGCCGGCTTGGTGGG
CTTGGGCGAGGTCTTGGGCGTTTTGGACTTGGGCGGCGACTTCTGCAGCG
CACGCAGCGTCTCCTGTGGCACCCAATCGTAGTCGATGGTGCTGTCGTTG
GCCGTGCCGGTTTCGATCACCTTCTTGGCAGCGGCACGCTTCCTCTTGCC
AGAGCTGCCGAGCAGATATTGCTGTCCGATGACCAGTAGCAGGACCACAA
TGCCCGCCAGCAGGACGTACAGGAAGAAAGTCTCGCCATCCAGACCCTCA
TCGACCTCCGAAATCAGAACGGTCTCATTGAACACGGCCTCGTTGTACTG
AATACCATTGGCATCGCGGTAGGCCAGTGCAATGTTCAGTCCAAATGGAC
GGCCGGCAAACTGATCCGAGGGCAGGAAGGTGTACGACACGGTCGACTCA
AAGCCGGGCTTCACCTCACGATTGTAGGCCACCGCCGAGAAGTTCTGGAT
GAAGTAGTTGAAGTCCATGGGATAGCGGAAGGAGGCCTCCACCGTCTCGA
TCACGAATTCCTCGGCTCCCTTGTTGGTGAATCCAATCAGGAACTCGACG
GGTTTGCCGCCGGGCAGATCCAGCTGCTGGCCAGGTGTGTACAGGGGTTT
CGTGAATAACAGATAGGTGTCCGCATTCGGCGAACTGCTGCTGCCCGTGT
CGCTATCCTCGTCCGCTTCTGCATCCTCGCCAGTAACGGCACCCTCCTCG
CCCTCCACGTCCACCAGGTCGTCCTCCACGGCCTCGGCGGCATAGGCTCC
CAACTTGTTGGGCGCCGAGAAGGTGCAGATGACGATGGGCA

BS06468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32701-PA 909 l(1)G0320-RA 35..909 891..17 4350 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 181..1055 891..17 4360 99.9 Minus
l(1)G0320-RA 1309 CG32701-RA 270..1144 891..17 4360 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551939..9552783 17..861 4210 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 01:02:00 has no hits.

BS06468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:56 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 36..909 17..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:31 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 36..909 17..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:00 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 182..1058 11..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:41 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 271..1147 11..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:41 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9551936..9552783 11..861 99 <- Plus
X 9553452..9553480 862..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:00 Download gff for BS06468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445969..9446816 11..861 99 <- Plus
arm_X 9447485..9447513 862..890 100   Plus

BS06468.5prime Sequence

937 bp (842 high quality bases) assembled on 2005-12-03

> BS06468.5prime
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCCAA
GCCGGCCAGTCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGG
TCAAGCGTTCCGCTGGCGATGATTAAAAGCTTTCTAG

BS06468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32701-PA 909 l(1)G0320-RA 1..831 17..847 4155 100 Plus
CG32701-PA 909 l(1)G0320-RA 830..909 847..926 400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 147..1055 17..926 4525 99.9 Plus
l(1)G0320-RA 1309 CG32701-RA 236..1144 17..926 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551939..9552783 926..81 4180 99.9 Minus
X 23542271 X 9553452..9553515 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-09 22:48:40 has no hits.

BS06468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:57 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 1..909 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:32 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:28:09 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 140..1058 9..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:56 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 229..1147 9..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:56 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9551936..9552783 81..932 99 <- Minus
X 9553452..9553522 9..80 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:28:09 Download gff for BS06468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445969..9446816 81..932 99 <- Minus
arm_X 9447485..9447555 9..80 94   Minus

BS06468.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635508

> BS06468.complete
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAG
CCGGCCAGTCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGGT
CAAGCGTTCCGCTGGCGATGATTAAAAGCTTTCTAGACCAT

BS06468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 909 CG32701-PB 1..909 17..925 4545 100 Plus
l(1)G0320-RA 909 CG32701-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 147..1055 17..925 4545 100 Plus
l(1)G0320-RA 1309 CG32701-RA 236..1144 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551939..9552783 925..81 4225 100 Minus
X 23542271 X 9553452..9553515 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:04:29 has no hits.

BS06468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:58 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:17 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 149..1067 9..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:09 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 147..1053 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:59 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 149..1067 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:07 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 236..1142 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:07 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
X 9551941..9552783 81..923 100 <- Minus
X 9553452..9553515 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:09 Download gff for BS06468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445974..9446816 81..923 100 <- Minus
arm_X 9447485..9447548 17..80 100   Minus

BS06468.pep Sequence

Translation from 16 to 924

> BS06468.pep
MRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGE
DAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFT
NKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTF
LPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLISEVDEGLDGETF
FLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDYD
WVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAG
DD*

BS06468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-PB 302 CG32701-PB 1..302 1..302 1547 100 Plus
l(1)G0320-PA 302 CG32701-PA 1..302 1..302 1547 100 Plus