Clone Sequence Records
BS06468.3prime Sequence
891 bp (810 high quality bases) assembled on 2005-12-03
> BS06468.3prime
ATGGTCTAGAAAGCTTTTAATCATCGCCAGCGGAACGCTTGACCTTGCGC
TGCTTGGGACTCTGCTGGCTGGCCGCCTTGGGACTGGCCGGCTTGGTGGG
CTTGGGCGAGGTCTTGGGCGTTTTGGACTTGGGCGGCGACTTCTGCAGCG
CACGCAGCGTCTCCTGTGGCACCCAATCGTAGTCGATGGTGCTGTCGTTG
GCCGTGCCGGTTTCGATCACCTTCTTGGCAGCGGCACGCTTCCTCTTGCC
AGAGCTGCCGAGCAGATATTGCTGTCCGATGACCAGTAGCAGGACCACAA
TGCCCGCCAGCAGGACGTACAGGAAGAAAGTCTCGCCATCCAGACCCTCA
TCGACCTCCGAAATCAGAACGGTCTCATTGAACACGGCCTCGTTGTACTG
AATACCATTGGCATCGCGGTAGGCCAGTGCAATGTTCAGTCCAAATGGAC
GGCCGGCAAACTGATCCGAGGGCAGGAAGGTGTACGACACGGTCGACTCA
AAGCCGGGCTTCACCTCACGATTGTAGGCCACCGCCGAGAAGTTCTGGAT
GAAGTAGTTGAAGTCCATGGGATAGCGGAAGGAGGCCTCCACCGTCTCGA
TCACGAATTCCTCGGCTCCCTTGTTGGTGAATCCAATCAGGAACTCGACG
GGTTTGCCGCCGGGCAGATCCAGCTGCTGGCCAGGTGTGTACAGGGGTTT
CGTGAATAACAGATAGGTGTCCGCATTCGGCGAACTGCTGCTGCCCGTGT
CGCTATCCTCGTCCGCTTCTGCATCCTCGCCAGTAACGGCACCCTCCTCG
CCCTCCACGTCCACCAGGTCGTCCTCCACGGCCTCGGCGGCATAGGCTCC
CAACTTGTTGGGCGCCGAGAAGGTGCAGATGACGATGGGCA
BS06468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32701-PA | 909 | l(1)G0320-RA | 35..909 | 891..17 | 4350 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0320-RB | 1854 | CG32701-RB | 181..1055 | 891..17 | 4360 | 99.9 | Minus |
l(1)G0320-RA | 1309 | CG32701-RA | 270..1144 | 891..17 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9551939..9552783 | 17..861 | 4210 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:02:00 has no hits.
BS06468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:56 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32701-PA | 36..909 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:31 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32701-PA | 36..909 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:00 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 182..1058 | 11..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:41 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 271..1147 | 11..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:41 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9551936..9552783 | 11..861 | 99 | <- | Plus |
X | 9553452..9553480 | 862..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:00 Download gff for
BS06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9445969..9446816 | 11..861 | 99 | <- | Plus |
arm_X | 9447485..9447513 | 862..890 | 100 | | Plus |
BS06468.5prime Sequence
937 bp (842 high quality bases) assembled on 2005-12-03
> BS06468.5prime
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCCAA
GCCGGCCAGTCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGG
TCAAGCGTTCCGCTGGCGATGATTAAAAGCTTTCTAG
BS06468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32701-PA | 909 | l(1)G0320-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG32701-PA | 909 | l(1)G0320-RA | 830..909 | 847..926 | 400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0320-RB | 1854 | CG32701-RB | 147..1055 | 17..926 | 4525 | 99.9 | Plus |
l(1)G0320-RA | 1309 | CG32701-RA | 236..1144 | 17..926 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9551939..9552783 | 926..81 | 4180 | 99.9 | Minus |
X | 23542271 | X | 9553452..9553515 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:48:40 has no hits.
BS06468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:41:57 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32701-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:32 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32701-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:28:09 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 140..1058 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:56 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 229..1147 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:56 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9551936..9552783 | 81..932 | 99 | <- | Minus |
X | 9553452..9553522 | 9..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:28:09 Download gff for
BS06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9445969..9446816 | 81..932 | 99 | <- | Minus |
arm_X | 9447485..9447555 | 9..80 | 94 | | Minus |
BS06468.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635508
> BS06468.complete
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAG
CCGGCCAGTCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGGT
CAAGCGTTCCGCTGGCGATGATTAAAAGCTTTCTAGACCAT
BS06468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0320-RB | 909 | CG32701-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
l(1)G0320-RA | 909 | CG32701-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0320-RB | 1854 | CG32701-RB | 147..1055 | 17..925 | 4545 | 100 | Plus |
l(1)G0320-RA | 1309 | CG32701-RA | 236..1144 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9551939..9552783 | 925..81 | 4225 | 100 | Minus |
X | 23542271 | X | 9553452..9553515 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:29 has no hits.
BS06468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:58 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:17 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 149..1067 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:09 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 147..1053 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:59 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 149..1067 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:07 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0320-RA | 236..1142 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:07 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9551941..9552783 | 81..923 | 100 | <- | Minus |
X | 9553452..9553515 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:09 Download gff for
BS06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9445974..9446816 | 81..923 | 100 | <- | Minus |
arm_X | 9447485..9447548 | 17..80 | 100 | | Minus |
BS06468.pep Sequence
Translation from 16 to 924
> BS06468.pep
MRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGE
DAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFT
NKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTF
LPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLISEVDEGLDGETF
FLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDYD
WVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAG
DD*
BS06468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0320-PB | 302 | CG32701-PB | 1..302 | 1..302 | 1547 | 100 | Plus |
l(1)G0320-PA | 302 | CG32701-PA | 1..302 | 1..302 | 1547 | 100 | Plus |