Clone Sequence Records
BS06471.3prime Sequence
855 bp (841 high quality bases) assembled on 2005-12-03
> BS06471.3prime
ATGGTCTAGAAAGCTTTTAATGTGCACTTAAGTTGTCAAAAATATTTCTT
GCATAATTAACCATGTCTTCACACGTTTCCGACTGTTTGTTTTTGGAAAT
AATTTGTTGAAGCTTCGATAGGATTTCCTCTCGTTTTTCCGTAGAGAGTT
TTAACTCCGATTCCCGCGAAAGAGATGAAAGTGCAAAAAGCGTAGTTTCT
TGTTTGATATCAAAGTCATCAACGGGCTTAAGGTTTTCCACTAGCACAGG
AAACACTTCTTCCTTCACAAAATCATCTCTGACAGACTTCTCGATTGAAG
TTAACGATGCAATTAGAAAAGCAGTCTTCACGTAGACATTTGTATTTGTG
GATTTCAGACAGGGTATCAAGGACCTGATCCCCTTTATGCGCTTAAACTC
GTCGTATCCAGGCTGAAAGTTCCTTATCAGCGATGATATCGCATACAAGG
AGCACCGCACGGTATTCGGATTCGAATGGCTCAAGTTCTTTGCAAGTGCA
GGCAAAAACTTATCGTTTATGAGGGCGTTCTGACAAAATACATTATTCTG
GGCCACTTCAGCGACAGTATTGAGTGCCGATTCTCGCACTTCGCTATCCG
AATGTGTTATGTAGCGGAGTAGAGTTGCAGTTCCTCCTAGCTTCACCAGC
GTTATGGCATTGTCGATGTCATCGATGTGGCTCCTTATGACATCCAGACT
CTCGATTTGGTCGTCCGTGCTGGATTCTTCGCTGTTCAAGATCACCAAAG
CTGCTTTCAGGGCCGCTGCAGCATCCACTGTCATGGCATTTAGGGCATTT
GCCAAAAACTGAGCTCTCTCANGATCGGGAGTTTCCAACTTTGGGGCTGC
TTCTG
BS06471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 921 | CG10973-RB | 83..921 | 855..17 | 4176 | 99.8 | Minus |
CG10973-PA | 768 | CG10973-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 139..979 | 855..15 | 4194 | 99.9 | Minus |
CG10984-RD | 2285 | CG10984-RD | 2175..2227 | 15..67 | 265 | 100 | Plus |
CG10984-RB | 2321 | CG10984-RB | 2211..2263 | 15..67 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 277..819 | 2715 | 100 | Plus |
3L | 28110227 | 3L | 12753404..12753615 | 67..278 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 12753292..12753344 | 15..67 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:42:58 has no hits.
BS06471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:03 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 83..921 | 17..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:38 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 83..921 | 17..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:47 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 139..979 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:47:59 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 139..979 | 15..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:47:59 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12753292..12753344 | 15..67 | 100 | <- | Plus |
3L | 12753405..12753613 | 68..276 | 100 | <- | Plus |
3L | 12753676..12754216 | 277..817 | 100 | <- | Plus |
3L | 12754542..12754579 | 818..855 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:47 Download gff for
BS06471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12746392..12746444 | 15..67 | 100 | <- | Plus |
arm_3L | 12746505..12746713 | 68..276 | 100 | <- | Plus |
arm_3L | 12746776..12747316 | 277..817 | 100 | <- | Plus |
arm_3L | 12747642..12747679 | 818..855 | 97 | | Plus |
BS06471.5prime Sequence
953 bp (752 high quality bases) assembled on 2005-12-03
> BS06471.5prime
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTTCAACA
ATTATTTCCAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTTATTTA
TGCAGAAATATTTTTGACAACTTAAGTGCACATTAAAAGCTTTCTAGACC
ATT
BS06471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 921 | CG10973-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
CG10973-PA | 768 | CG10973-RA | 1..675 | 170..844 | 3375 | 100 | Plus |
CG10973-PB | 921 | CG10973-RB | 845..879 | 860..894 | 175 | 100 | Plus |
CG10973-PA | 768 | CG10973-RA | 692..726 | 860..894 | 175 | 100 | Plus |
CG10973-PB | 921 | CG10973-RB | 889..921 | 904..936 | 165 | 100 | Plus |
CG10973-PA | 768 | CG10973-RA | 736..768 | 904..936 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 57..979 | 17..938 | 4485 | 99.4 | Plus |
CG10984-RD | 2285 | CG10984-RD | 2175..2227 | 938..886 | 205 | 94.4 | Minus |
CG10984-RB | 2321 | CG10984-RB | 2211..2263 | 938..886 | 205 | 94.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 677..135 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 12753404..12753615 | 886..676 | 950 | 97.6 | Minus |
3L | 28110227 | 3L | 12754542..12754621 | 136..57 | 400 | 100 | Minus |
3L | 28110227 | 3L | 12754677..12754718 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:07:08 has no hits.
BS06471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:04 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:40 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-PB | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:16 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..979 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:40 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..979 | 17..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:40 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12754542..12754619 | 59..136 | 100 | <- | Minus |
3L | 12754677..12754718 | 17..58 | 100 | | Minus |
3L | 12753292..12753344 | 886..938 | 94 | <- | Minus |
3L | 12753405..12753613 | 678..885 | 98 | <- | Minus |
3L | 12753676..12754216 | 137..677 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:16 Download gff for
BS06471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12747642..12747719 | 59..136 | 100 | <- | Minus |
arm_3L | 12747777..12747818 | 17..58 | 100 | | Minus |
arm_3L | 12746392..12746444 | 886..938 | 94 | <- | Minus |
arm_3L | 12746505..12746713 | 678..885 | 98 | <- | Minus |
arm_3L | 12746776..12747316 | 137..677 | 100 | <- | Minus |
BS06471.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635509
> BS06471.complete
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA
TGCAAGAAATATTTTTGACAACTTAAGTGCACATTAAAAGCTTTCTAGAC
CAT
BS06471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 921 | CG10973-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-RB | 1032 | CG10973-RB | 57..979 | 17..939 | 4615 | 100 | Plus |
CG10984-RD | 2285 | CG10984-RD | 2175..2227 | 939..887 | 265 | 100 | Minus |
CG10984-RB | 2321 | CG10984-RB | 2211..2263 | 939..887 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12753676..12754218 | 677..135 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 12753404..12753615 | 887..676 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 12754542..12754621 | 136..57 | 400 | 100 | Minus |
3L | 28110227 | 3L | 12753292..12753344 | 939..887 | 265 | 100 | Minus |
3L | 28110227 | 3L | 12754677..12754718 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:12 has no hits.
BS06471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:00 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:18 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 11..933 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:00 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..975 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:00 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 11..933 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:05 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10973-RB | 57..975 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:05 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12754677..12754718 | 17..58 | 100 | | Minus |
3L | 12753296..12753344 | 887..935 | 100 | <- | Minus |
3L | 12753405..12753613 | 678..886 | 100 | <- | Minus |
3L | 12753676..12754216 | 137..677 | 100 | <- | Minus |
3L | 12754542..12754619 | 59..136 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:00 Download gff for
BS06471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12746396..12746444 | 887..935 | 100 | <- | Minus |
arm_3L | 12746505..12746713 | 678..886 | 100 | <- | Minus |
arm_3L | 12746776..12747316 | 137..677 | 100 | <- | Minus |
arm_3L | 12747642..12747719 | 59..136 | 100 | <- | Minus |
arm_3L | 12747777..12747818 | 17..58 | 100 | | Minus |
BS06471.pep Sequence
Translation from 16 to 936
> BS06471.pep
MTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLANALN
AMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKL
GGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAK
NLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTN
VYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQETTL
FALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYARNIF
DNLSAH*
BS06471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10973-PB | 306 | CG10973-PB | 1..306 | 1..306 | 1530 | 100 | Plus |