Clone BS06471 Report

Search the DGRC for BS06471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG10973-RB
Protein status:BS06471.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06471.3prime Sequence

855 bp (841 high quality bases) assembled on 2005-12-03

> BS06471.3prime
ATGGTCTAGAAAGCTTTTAATGTGCACTTAAGTTGTCAAAAATATTTCTT
GCATAATTAACCATGTCTTCACACGTTTCCGACTGTTTGTTTTTGGAAAT
AATTTGTTGAAGCTTCGATAGGATTTCCTCTCGTTTTTCCGTAGAGAGTT
TTAACTCCGATTCCCGCGAAAGAGATGAAAGTGCAAAAAGCGTAGTTTCT
TGTTTGATATCAAAGTCATCAACGGGCTTAAGGTTTTCCACTAGCACAGG
AAACACTTCTTCCTTCACAAAATCATCTCTGACAGACTTCTCGATTGAAG
TTAACGATGCAATTAGAAAAGCAGTCTTCACGTAGACATTTGTATTTGTG
GATTTCAGACAGGGTATCAAGGACCTGATCCCCTTTATGCGCTTAAACTC
GTCGTATCCAGGCTGAAAGTTCCTTATCAGCGATGATATCGCATACAAGG
AGCACCGCACGGTATTCGGATTCGAATGGCTCAAGTTCTTTGCAAGTGCA
GGCAAAAACTTATCGTTTATGAGGGCGTTCTGACAAAATACATTATTCTG
GGCCACTTCAGCGACAGTATTGAGTGCCGATTCTCGCACTTCGCTATCCG
AATGTGTTATGTAGCGGAGTAGAGTTGCAGTTCCTCCTAGCTTCACCAGC
GTTATGGCATTGTCGATGTCATCGATGTGGCTCCTTATGACATCCAGACT
CTCGATTTGGTCGTCCGTGCTGGATTCTTCGCTGTTCAAGATCACCAAAG
CTGCTTTCAGGGCCGCTGCAGCATCCACTGTCATGGCATTTAGGGCATTT
GCCAAAAACTGAGCTCTCTCANGATCGGGAGTTTCCAACTTTGGGGCTGC
TTCTG

BS06471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 921 CG10973-RB 83..921 855..17 4176 99.8 Minus
CG10973-PA 768 CG10973-RA 1..768 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 139..979 855..15 4194 99.9 Minus
CG10984-RD 2285 CG10984-RD 2175..2227 15..67 265 100 Plus
CG10984-RB 2321 CG10984-RB 2211..2263 15..67 265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 277..819 2715 100 Plus
3L 28110227 3L 12753404..12753615 67..278 1060 100 Plus
3L 28110227 3L 12753292..12753344 15..67 265 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:42:58 has no hits.

BS06471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:03 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 83..921 17..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:38 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 83..921 17..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:06:47 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 139..979 15..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:47:59 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 139..979 15..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:47:59 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12753292..12753344 15..67 100 <- Plus
3L 12753405..12753613 68..276 100 <- Plus
3L 12753676..12754216 277..817 100 <- Plus
3L 12754542..12754579 818..855 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:06:47 Download gff for BS06471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12746392..12746444 15..67 100 <- Plus
arm_3L 12746505..12746713 68..276 100 <- Plus
arm_3L 12746776..12747316 277..817 100 <- Plus
arm_3L 12747642..12747679 818..855 97   Plus

BS06471.5prime Sequence

953 bp (752 high quality bases) assembled on 2005-12-03

> BS06471.5prime
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTTCAACA
ATTATTTCCAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTTATTTA
TGCAGAAATATTTTTGACAACTTAAGTGCACATTAAAAGCTTTCTAGACC
ATT

BS06471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 921 CG10973-RB 1..828 17..844 4140 100 Plus
CG10973-PA 768 CG10973-RA 1..675 170..844 3375 100 Plus
CG10973-PB 921 CG10973-RB 845..879 860..894 175 100 Plus
CG10973-PA 768 CG10973-RA 692..726 860..894 175 100 Plus
CG10973-PB 921 CG10973-RB 889..921 904..936 165 100 Plus
CG10973-PA 768 CG10973-RA 736..768 904..936 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 57..979 17..938 4485 99.4 Plus
CG10984-RD 2285 CG10984-RD 2175..2227 938..886 205 94.4 Minus
CG10984-RB 2321 CG10984-RB 2211..2263 938..886 205 94.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 677..135 2715 100 Minus
3L 28110227 3L 12753404..12753615 886..676 950 97.6 Minus
3L 28110227 3L 12754542..12754621 136..57 400 100 Minus
3L 28110227 3L 12754677..12754718 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:07:08 has no hits.

BS06471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:04 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..921 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:40 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-PB 1..921 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:31:16 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..979 17..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:40 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..979 17..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:40 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12754542..12754619 59..136 100 <- Minus
3L 12754677..12754718 17..58 100   Minus
3L 12753292..12753344 886..938 94 <- Minus
3L 12753405..12753613 678..885 98 <- Minus
3L 12753676..12754216 137..677 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:31:16 Download gff for BS06471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12747642..12747719 59..136 100 <- Minus
arm_3L 12747777..12747818 17..58 100   Minus
arm_3L 12746392..12746444 886..938 94 <- Minus
arm_3L 12746505..12746713 678..885 98 <- Minus
arm_3L 12746776..12747316 137..677 100 <- Minus

BS06471.complete Sequence

953 bp (953 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635509

> BS06471.complete
GAAGTTATCAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAA
GCTTGCAGAATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCA
GAAGCAGCCCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTT
GGCAAATGCCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAG
CAGCTTTGGTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATC
GAGAGTCTGGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCAT
AACGCTGGTGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACAC
ATTCGGATAGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTG
GCCCAGAATAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTT
GCCTGCACTTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGT
GCTCCTTGTATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATAC
GACGAGTTTAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAA
ATCCACAAATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGT
TAACTTCAATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTG
TTTCCTGTGCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAA
ACAAGAAACTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGT
TAAAACTCTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAA
ATTATTTCCAAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTAATTA
TGCAAGAAATATTTTTGACAACTTAAGTGCACATTAAAAGCTTTCTAGAC
CAT

BS06471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 921 CG10973-PB 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-RB 1032 CG10973-RB 57..979 17..939 4615 100 Plus
CG10984-RD 2285 CG10984-RD 2175..2227 939..887 265 100 Minus
CG10984-RB 2321 CG10984-RB 2211..2263 939..887 265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12753676..12754218 677..135 2715 100 Minus
3L 28110227 3L 12753404..12753615 887..676 1060 100 Minus
3L 28110227 3L 12754542..12754621 136..57 400 100 Minus
3L 28110227 3L 12753292..12753344 939..887 265 100 Minus
3L 28110227 3L 12754677..12754718 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:22:12 has no hits.

BS06471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:00 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 1..921 17..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:18 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 11..933 17..939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:00 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..975 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:00 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 11..933 17..939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:05 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
CG10973-RB 57..975 17..935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:05 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12754677..12754718 17..58 100   Minus
3L 12753296..12753344 887..935 100 <- Minus
3L 12753405..12753613 678..886 100 <- Minus
3L 12753676..12754216 137..677 100 <- Minus
3L 12754542..12754619 59..136 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:00 Download gff for BS06471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12746396..12746444 887..935 100 <- Minus
arm_3L 12746505..12746713 678..886 100 <- Minus
arm_3L 12746776..12747316 137..677 100 <- Minus
arm_3L 12747642..12747719 59..136 100 <- Minus
arm_3L 12747777..12747818 17..58 100   Minus

BS06471.pep Sequence

Translation from 16 to 936

> BS06471.pep
MTDPNVPRGALSLQNVLKYTVQHHDPNPEAAPKLETPDPERAQFLANALN
AMTVDAAAALKAALVILNSEESSTDDQIESLDVIRSHIDDIDNAITLVKL
GGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAK
NLSHSNPNTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTN
VYVKTAFLIASLTSIEKSVRDDFVKEEVFPVLVENLKPVDDFDIKQETTL
FALSSLSRESELKLSTEKREEILSKLQQIISKNKQSETCEDMVNYARNIF
DNLSAH*

BS06471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10973-PB 306 CG10973-PB 1..306 1..306 1530 100 Plus