Clone Sequence Records
BS06472.3prime Sequence
824 bp (822 high quality bases) assembled on 2005-12-03
> BS06472.3prime
ATGGTCTAGAAAGCTTTTATTTTGATGTGCTCTTGTAGACGTCAACAAAT
GCGCTTAGTTCTTTGTTTATATCGCTAGCCACGGTGACCAGAGGATCCTT
GTCCACTTCAGATACAAATACCAGGCATTCTTCATTTAAAGATTTGGCCA
ATATAGGGCAAAACTCATGGAGAAAACCCCTTTCTGAATTACTATGATTG
CAGAGAAGAACGGTGGTATTGTTGTGAGTAAACTCCAGAACTTCGTGATG
GGACATTTCGCCGGTAATGATAAGATCCGCTTGGATACCCTTCAGCAGAG
ATGCTCCAGAGCCGGCACAAATGCCGACGGATTGGATGAGTGTCTTGGGG
GTGTGGCCCACAGCTAGAGCAACGTGCACGCTGTTTCTAATGCGCTTTTG
CAGAGACTCCACCACCTGGGAAAGCTCCATTTTGGTTTCTATATATCTAC
CGGATCCGGTACCCGGAGGAGCACCCAACTCCGGTTCCAGAGGGCGGATG
CTGATGATATTCACTGCCTTAGATAGCCAGTCGTTGACGCCACCACTCTT
CTTATCCCACGCCGTGTGGGGCGAGTACAAGGCTATATCGTTGGCCAAGC
ATGCTGCCACCACGCGCTCCTTCCAATGTGACTGCGTAATCCTGGTCAGG
GGCTTGAAAATTGGCGGATGATAGCTGATTATGAGCTCCGCCTCCTTCTC
TAGCGCTTCTTTCACTACGGGCTCGGTTAAATCGTTAGTTAATAGTATTT
TCTTGATTTGTTTTTCGCGGTGCGGTTCGATCAGGAGTCCCACATTGTCC
CACTTCTCTGCCCAAGAAGTCGGA
BS06472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 879 | CG4278-RA | 72..879 | 824..17 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 160..967 | 824..17 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327228..16328035 | 824..17 | 4040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:32:15 has no hits.
BS06472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:05 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 73..879 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:41 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 73..879 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:25:58 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 161..971 | 10..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:53:05 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 161..971 | 10..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:53:05 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327229..16328039 | 10..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:25:58 Download gff for
BS06472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327229..16328039 | 10..823 | 99 | | Minus |
BS06472.5prime Sequence
845 bp (843 high quality bases) assembled on 2005-12-03
> BS06472.5prime
GAAGTTATCAGTCGACATGCTGAGAAGGATGAACACTTTTAGTGGTCAAA
AGCTGGCGGCTGTGGTCAAGGAGCTGGAGAACTTTGCTCCGACTTCTTGG
GCAGAGAAGTGGGACAATGTGGGACTCCTGATCGAACCGCACCGCGAAAA
ACAAATCAAGAAAATACTATTAACTAACGATTTAACCGAGCCCGTAGTGA
AAGAAGCGCTAGAGAAGGAGGCGGAGCTCATAATCAGCTATCATCCGCCA
ATTTTCAAGCCCCTGACCAGGATTACGCAGTCACATTGGAAGGAGCGCGT
GGTGGCAGCATGCTTGGCCAACGATATAGCCTTGTACTCGCCCCACACGG
CGTGGGATAAGAAGAGTGGTGGCGTCAACGACTGGCTATCTAAGGCAGTG
AATATCATCAGCATCCGCCCTCTGGAACCGGAGTTGGGTGCTCCTCCGGG
TACCGGATCCGGTAGATATATAGAAACCAAAATGGAGCTTTCCCAGGTGG
TGGAGTCTCTGCAAAAGCGCATTAGAAACAGCGTGCACGTTGCTCTAGCT
GTGGGCCACACCCCCAAGACACTCATCCAATCCGTCGGCATTTGTGCCGG
CTCTGGAGCATCTCTGCTGAAGGGTATCCAAGCGGATCTTATCATTACCG
GCGAAATGTCCCATCACGAAGTTCTGGAGTTTACTCACAACAATACCACC
GTTCTTCTCTGCAATCATAGTAATTCAGAAAGGGGTTTTCTCCATGAGTT
TTGCCCTATATTGGCCAAATCTTTAAATGAAGAATGCCTGGTATTTGTAT
CTGAAGTGGACAAGGATCCTCTGGTCACCGTGGCTAGCGATATAA
BS06472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 879 | CG4278-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 89..917 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327157..16327985 | 17..845 | 4145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:44:45 has no hits.
BS06472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:06 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:43 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:09:43 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..917 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:56 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 85..917 | 10..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:56 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327153..16327985 | 10..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:09:43 Download gff for
BS06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327153..16327985 | 10..845 | 99 | | Plus |
BS06472.complete Sequence
911 bp (911 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635510
> BS06472.complete
GAAGTTATCAGTCGACATGCTGAGAAGGATGAACACTTTTAGTGGTCAAA
AGCTGGCGGCTGTGGTCAAGGAGCTGGAGAACTTTGCTCCGACTTCTTGG
GCAGAGAAGTGGGACAATGTGGGACTCCTGATCGAACCGCACCGCGAAAA
ACAAATCAAGAAAATACTATTAACTAACGATTTAACCGAGCCCGTAGTGA
AAGAAGCGCTAGAGAAGGAGGCGGAGCTCATAATCAGCTATCATCCGCCA
ATTTTCAAGCCCCTGACCAGGATTACGCAGTCACATTGGAAGGAGCGCGT
GGTGGCAGCATGCTTGGCCAACGATATAGCCTTGTACTCGCCCCACACGG
CGTGGGATAAGAAGAGTGGTGGCGTCAACGACTGGCTATCTAAGGCAGTG
AATATCATCAGCATCCGCCCTCTGGAACCGGAGTTGGGTGCTCCTCCGGG
TACCGGATCCGGTAGATATATAGAAACCAAAATGGAGCTTTCCCAGGTGG
TGGAGTCTCTGCAAAAGCGCATTAGAAACAGCGTGCACGTTGCTCTAGCT
GTGGGCCACACCCCCAAGACACTCATCCAATCCGTCGGCATTTGTGCCGG
CTCTGGAGCATCTCTGCTGAAGGGTATCCAAGCGGATCTTATCATTACCG
GCGAAATGTCCCATCACGAAGTTCTGGAGTTTACTCACAACAATACCACC
GTTCTTCTCTGCAATCATAGTAATTCAGAAAGGGGTTTTCTCCATGAGTT
TTGCCCTATATTGGCCAAATCTTTAAATGAAGAATGCCTGGTATTTGTAT
CTGAAGTGGACAAGGATCCTCTGGTCACCGTGGCTAGCGATATAAACAAA
GAACTAAGCGCATTTGTTGACGTCTACAAGAGCACATCAAAATAAAAGCT
TTCTAGACCAT
BS06472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 879 | CG4278-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-RA | 1063 | CG4278-RA | 89..967 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16327157..16328035 | 17..895 | 4395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:50:13 has no hits.
BS06472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:24 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:44 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 83..969 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:43 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 89..965 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:24 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 83..969 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:17 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4278-RA | 89..965 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:17 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16327157..16328033 | 17..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:43 Download gff for
BS06472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16327157..16328033 | 17..893 | 100 | | Plus |
BS06472.pep Sequence
Translation from 16 to 894
> BS06472.pep
MLRRMNTFSGQKLAAVVKELENFAPTSWAEKWDNVGLLIEPHREKQIKKI
LLTNDLTEPVVKEALEKEAELIISYHPPIFKPLTRITQSHWKERVVAACL
ANDIALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEPELGAPPGTGSGR
YIETKMELSQVVESLQKRIRNSVHVALAVGHTPKTLIQSVGICAGSGASL
LKGIQADLIITGEMSHHEVLEFTHNNTTVLLCNHSNSERGFLHEFCPILA
KSLNEECLVFVSEVDKDPLVTVASDINKELSAFVDVYKSTSK*
BS06472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4278-PA | 292 | CG4278-PA | 1..292 | 1..292 | 1505 | 100 | Plus |
