Clone Sequence Records
BS06474.3prime Sequence
886 bp (858 high quality bases) assembled on 2005-12-03
> BS06474.3prime
ATGGTCTAGAAAGCTTTTACTCGGTCACTTTCCAAATTTTAATGGTGCCA
TCATCGCTGCATGATATCAGTTGCCCGGCCACCACAGGATTCCACTGCAC
CGAGTTTACGTCCTGATCGTGAGCGCCTTCCTCCGCGGTTATCTGCTCGA
ACGTGGGTTCGTCTGGCTTGGAGTCGCTGCTCTCCTTAAAGATACGAATG
CCGTCGTCGCCACAGGCAGTCGCTATCAGACCTGTAAGCTTGCACCAGGA
CACGTCGTAGATAGCCCGCGAGTGCTGCCCGGACACTGTGCACACGCACT
TCCACACGGTTTGCTGGTCGGGCGTAGCCACTCCGGCTGTATTTCCGGGA
TGGTAGGCCCTCCAAATCTTTATTGTGGTGTCATCGCTACAGGAAACCAG
GCGCTCGCCATCAGCATCGAAGTCAATGCCCCAAACCGTGCTTGTGTGTG
AAGTAAGAGTGGCTGTGCAATCCCAGTCGTTGTCTATGGGCTCCTCTGCG
AACATTTTTATGGTATTGTCGTACGAGGCGGAGGCCAAAATGTCCTTGGT
TGGATGCCACACCACTCTCTTCACGTCCTGTGTGTGCGGGTTCAAAACGG
CGGCGCACTCGAACTCATCATCGCCGGCAACCTCCCAGATCCACACGGAC
TTGTCCCGCGAACAGGTGGCCAGTAGTCCGCCGGATCGCGACCAGCTAAC
GCTCTTCACCTCGTTTTCGTGACCCTCCAATGTTGCGTTGCATTCGAATT
CTCCCGAGGATTTCGACCAGATCGCCGTGGTGGCATCAAAGCTGGCCGAG
GCCAAGTACTGACCGCATGGAGACCATCGGATCTCGCGAATAGTGCGCTT
GTGGCCATCGGATAGGATGGTCTTTGTGCTCAAGTG
BS06474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12797-PA | 1008 | CG12797-RA | 144..1008 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 227..1097 | 886..17 | 4330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14853952..14854816 | 17..881 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:32:11 has no hits.
BS06474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:09 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 138..1008 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:47 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 138..1008 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:25 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 227..1097 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:20 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 227..1097 | 17..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:20 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14853952..14854822 | 17..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:25 Download gff for
BS06474.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741457..10742327 | 17..886 | 99 | | Plus |
BS06474.5prime Sequence
956 bp (833 high quality bases) assembled on 2005-12-03
> BS06474.5prime
GAAGTTATCAGTCGACATGGGACGTTTAATTCTGGAACACACGCTGCAGG
GCCACAAGGGGCGCATCTGGGGAGTGGCATGGCATCCTAAGGGCAACGTA
TTCGCCTCGTGCGGCGAGGACAAAGCCATCCGCATTTGGTCGCTGACCGG
GAACACTTGGAGCACAAAGACCATCCTATCCGATGGCCACAAGCGCACTA
TTCGCGAGATCCGATGGTCTCCATGCGGTCAGTACTTGGCCTCGGCCAGC
TTTGATGCCACCACGGCGATCTGGTCGAAATCCTCGGGAGAATTCGAATG
CAACGCAACATTGGAGGGTCACGAAAACGAGGTGAAGAGCGTTAGCTGGT
CGCGATCCGGCGGACTACTGGCCACCTGTTCGCGGGACAAGTCCGTGTGG
ATCTGGGAGGTTGCCGGCGATGATGAGTTCGAGTGCGCCGCCGTTTTGAA
CCCGCACACACAGGACGTGAAGAGAGTGGTGTGGCATCCAACCAAGGACA
TTTTGGCCTCCGCCTCGTACGACAATACCATAAAAATGTTCGCAGAGGAG
CCCATAGACAACGACTGGGATTGCACAGCCACTCTTACTTCACACACAAG
CACGGTTTGGGGCATTGACTTCGATGCTGATGGCGAGCGCCTGGTTTCCT
GTAGCGATGACACCACAATAAAGATTTGGAGGGCCTACCATCCCGGAAAT
ACAGCCGGAGTGGCTACGCCCGACCAGCAAACCGTGTGGAAGTGCGTGTG
CACAGTGTCCGGGCAGCACTCGCGGGCTATCTACGACGTGTCCTGGTGCA
AGCTTACAGGTCTGATAGCGACTGCCTGTGGCGACGACGGCATTCGTATC
TTTAAGGAGAGCAGCGACTCCAAGCCAGACGAACCCACGTTCGAGCAGAT
AACCGCGGAGGAAGGCGCTCACGATCAGGACGTAAACTCGGTGCAATGGA
ATCCTG
BS06474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12797-PA | 1008 | CG12797-RA | 1..940 | 17..956 | 4675 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 90..1029 | 17..956 | 4685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14854020..14854959 | 956..17 | 4685 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:21:58 has no hits.
BS06474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:10 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:49 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:24 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..1029 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:19 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..1029 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:19 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14854020..14854964 | 9..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:24 Download gff for
BS06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741525..10742469 | 9..956 | 99 | | Minus |
BS06474.complete Sequence
1040 bp (1040 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635511
> BS06474.complete
GAAGTTATCAGTCGACATGGGACGTTTAATTCTGGAACACACGCTGCAGG
GCCACAAGGGGCGCATCTGGGGAGTGGCATGGCATCCTAAGGGCAACGTA
TTCGCCTCGTGCGGCGAGGACAAAGCCATCCGCATTTGGTCGCTGACCGG
GAACACTTGGAGCACAAAGACCATCCTATCCGATGGCCACAAGCGCACTA
TTCGCGAGATCCGATGGTCTCCATGCGGTCAGTACTTGGCCTCGGCCAGC
TTTGATGCCACCACGGCGATCTGGTCGAAATCCTCGGGAGAATTCGAATG
CAACGCAACATTGGAGGGTCACGAAAACGAGGTGAAGAGCGTTAGCTGGT
CGCGATCCGGCGGACTACTGGCCACCTGTTCGCGGGACAAGTCCGTGTGG
ATCTGGGAGGTTGCCGGCGATGATGAGTTCGAGTGCGCCGCCGTTTTGAA
CCCGCACACACAGGACGTGAAGAGAGTGGTGTGGCATCCAACCAAGGACA
TTTTGGCCTCCGCCTCGTACGACAATACCATAAAAATGTTCGCAGAGGAG
CCCATAGACAACGACTGGGATTGCACAGCCACTCTTACTTCACACACAAG
CACGGTTTGGGGCATTGACTTCGATGCTGATGGCGAGCGCCTGGTTTCCT
GTAGCGATGACACCACAATAAAGATTTGGAGGGCCTACCATCCCGGAAAT
ACAGCCGGAGTGGCTACGCCCGACCAGCAAACCGTGTGGAAGTGCGTGTG
CACAGTGTCCGGGCAGCACTCGCGGGCTATCTACGACGTGTCCTGGTGCA
AGCTTACAGGTCTGATAGCGACTGCCTGTGGCGACGACGGCATTCGTATC
TTTAAGGAGAGCAGCGACTCCAAGCCAGACGAACCCACGTTCGAGCAGAT
AACCGCGGAGGAAGGCGCTCACGATCAGGACGTAAACTCGGTGCAGTGGA
ATCCTGTGGTGGCCGGGCAACTGATATCATGCAGCGATGATGGCACCATT
AAAATTTGGAAAGTGACCGAGTAAAAGCTTTCTAGACCAT
BS06474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1008 | CG12797-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 90..1097 | 17..1024 | 5040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14853952..14854959 | 1024..17 | 5040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:50:41 has no hits.
BS06474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:01 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:20 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 105..1117 | 9..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:34 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 90..1095 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:01 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 105..1117 | 9..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:52 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 90..1095 | 17..1022 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:52 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14853954..14854959 | 17..1022 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:34 Download gff for
BS06474.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741459..10742464 | 17..1022 | 100 | | Minus |
BS06474.pep Sequence
Translation from 16 to 1023
> BS06474.pep
MGRLILEHTLQGHKGRIWGVAWHPKGNVFASCGEDKAIRIWSLTGNTWST
KTILSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLE
GHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQD
VKRVVWHPTKDILASASYDNTIKMFAEEPIDNDWDCTATLTSHTSTVWGI
DFDADGERLVSCSDDTTIKIWRAYHPGNTAGVATPDQQTVWKCVCTVSGQ
HSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTFEQITAEEG
AHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVTE*
BS06474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-PA | 335 | CG12797-PA | 1..335 | 1..335 | 1838 | 100 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PA | 411 | CG8440-PA | 143..366 | 7..221 | 284 | 30.4 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 103..409 | 9..332 | 247 | 25.6 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 103..409 | 9..332 | 247 | 25.6 | Plus |
| Lis-1-PB | 411 | CG8440-PB | 103..409 | 9..332 | 247 | 25.6 | Plus |
