Clone Sequence Records
BS06475.3prime Sequence
882 bp (881 high quality bases) assembled on 2005-12-03
> BS06475.3prime
ATGGTCTAGAAAGCTTTTATTTGGCCTTCCTTTCGGTGGCGTACAGATCT
AGACGTCTTTGCCCAAAGACGGGAATCTGCTGACGCACCTGCTCCACCTC
GGAGAAATCTATATCGGCCACCACGATTTCCTCGCCTTCACTGGCACTCT
GCTGCACCTTGGCCCATGGATTCACCACCATGGAATGGCCATAGGCTACA
TACTCGGCGCTTGTGTCACGGGCTGGTGATGTTGTGACCACAAAGAGTTG
GTTGTCATTGGCACGGGATCGCTGCAATAGCTCCCAGTGCAGTGGACCAG
TGGTCATGTTGAATGCAGCCGGATAGATGATCATCTCGCAGCCTGCGTTG
CGATAGAGCCTCGCCATCTCCTCGAATCGAATATCGTAGCAGATGCCGAT
GCCAATCTTGTGGCCATCTACGTTGATGATGGTGAAATCATTGCCTGCGG
ACAGCGTTTCCGACTCCTTGAAGCGAATGCCACCCTTGACATCTATGTCA
AAGAGATGCATCTTGCGATGCTTGGCCACAAGGTCACCAGTGGGTGACCA
AACCGTGCAGGTGTTGTAGATGGCATCGTTTTCGCCCAGTTCAGGGATTG
TTCCGCCCACGATGTACACCTGGTGCTTCCTGGCCAAATTGGAGAGCTGT
TGCGAGGTATAGCCATCGGGAATGGTCTCGGAGTACTCCCGAAAGTACTT
GGTGCCGTATGGAGCATTAAAGCACTCCGGCAGAGTGATCAATCGGGGTT
TATGCTCCTTGACCGCCGCCTCGATTTTGGTGACGGCGTTTTGGACATTG
GCCACTTTGTCCTTGGAACCCTTGAGCTGCAGCAGCGCCAAACGCATGAT
GTTGCTAGTTTTGCTCATGTCGACTGATAACT
BS06475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 852 | CG8132-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..925 | 868..16 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402474 | 849..16 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:00:53 has no hits.
BS06475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:11 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:51 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:25 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..933 | 8..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:42 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..933 | 8..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:42 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401641..9402482 | 8..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:25 Download gff for
BS06475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227363..5228204 | 8..849 | 99 | | Minus |
BS06475.5prime Sequence
881 bp (791 high quality bases) assembled on 2005-12-03
> BS06475.5prime
GAAGTTATCAGTCGACATGAGCAAAACTAGCAACATCATGCGTTTGGCGC
TGCTGCAGCTCAAGGGTTCCAAGGACAAAGTGGCCAATGTCCAAAACGCC
GTCACCAAAATCGAGGCGGCGGTCAAGGAGCATAAACCCCGATTGATCAC
TCTGCCGGAGTGCTTTAATGCTCCATACGGCACCAAGTACTTTCGGGAGT
ACTCCGAGACCATTCCCGATGGCTATACCTCGCAACAGCTCTCCAATTTG
GCCAGGAAGCACCAGGTGTACATCGTGGGCGGAACAATCCCTGAACTGGG
CGAAAACGATGCCATCTACAACACCTGCACGGTTTGGTCACCCACTGGTG
ACCTTGTGGCCAAGCATCGCAAGATGCATCTCTTTGACATAGATGTCAAG
GGTGGCATTCGCTTCAAGGAGTCGGAAACGCTGTCCGCAGGCAATGATTT
CACCATCATCAACGTAGATGGCCACAAGATTGGCATCGGCATCTGCTACG
ATATTCGATTCGAGGAGATGGCGAGGCTCTATCGCAACGCAGGCTGCGAG
ATGATCATCTATCCGGCTGCATTCAACATGACCACTGGTCCACTGCACTG
GGAGCTATTGCAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCA
CAACATCACCAGCCCGTGACACAAGCGCCGAGTATGTAGCCTATGGCCAT
TCCATGGTGGTGAATCCATGGGCCAAGGTGCAGCAGAGTGCCAGTGAAGG
CGAGGAAATCGTGGTGGCCGATATAGATTTCTCCGAGGTGGAGCAGGTGC
GTCAGCAGATTCCCGTCTTTGGGCAAAGACGTCTAGATCTGTACGCCACC
GAAAGGAAGGCCAATAAAAGCTTTCTAGACC
BS06475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 852 | CG8132-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..920 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402469 | 36..864 | 4145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:50:50 has no hits.
BS06475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:12 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:52 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:44:36 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..933 | 5..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:13 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 63..933 | 5..876 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:13 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401641..9402482 | 36..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:44:36 Download gff for
BS06475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227363..5228204 | 36..876 | 99 | | Plus |
BS06475.complete Sequence
884 bp (884 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635512
> BS06475.complete
GAAGTTATCAGTCGACATGAGCAAAACTAGCAACATCATGCGTTTGGCGC
TGCTGCAGCTCAAGGGTTCCAAGGACAAAGTGGCCAATGTCCAAAACGCC
GTCACCAAAATCGAGGCGGCGGTCAAGGAGCATAAACCCCGATTGATCAC
TCTGCCGGAGTGCTTTAATGCTCCATACGGCACCAAGTACTTTCGGGAGT
ACTCCGAGACCATTCCCGATGGCTATACCTCGCAACAGCTCTCCAATTTG
GCCAGGAAGCACCAGGTGTACATCGTGGGCGGAACAATCCCTGAACTGGG
CGAAAACGATGCCATCTACAACACCTGCACGGTTTGGTCACCCACTGGTG
ACCTTGTGGCCAAGCATCGCAAGATGCATCTCTTTGACATAGATGTCAAG
GGTGGCATTCGCTTCAAGGAGTCGGAAACGCTGTCCGCAGGCAATGATTT
CACCATCATCAACGTAGATGGCCACAAGATTGGCATCGGCATCTGCTACG
ATATTCGATTCGAGGAGATGGCGAGGCTCTATCGCAACGCAGGCTGCGAG
ATGATCATCTATCCGGCTGCATTCAACATGACCACTGGTCCACTGCACTG
GGAGCTATTGCAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCA
CAACATCACCAGCCCGTGACACAAGCGCCGAGTATGTAGCCTATGGCCAT
TCCATGGTGGTGAATCCATGGGCCAAGGTGCAGCAGAGTGCCAGTGAAGG
CGAGGAAATCGTGGTGGCCGATATAGATTTCTCCGAGGTGGAGCAGGTGC
GTCAGCAGATTCCCGTCTTTGGGCAAAGACGTCTAGATCTGTACGCCACC
GAAAGGAAGGCCAAATAAAAGCTTTCTAGACCAT
BS06475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 852 | CG8132-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..925 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402474 | 36..869 | 4170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:10:28 has no hits.
BS06475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:02 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:22 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 38..908 | 5..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:33 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 73..922 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:02 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 38..908 | 5..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:27 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 73..922 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:27 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401567..9401585 | 17..35 | 100 | -> | Plus |
| 3R | 9401641..9402471 | 36..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:33 Download gff for
BS06475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227289..5227307 | 17..35 | 100 | -> | Plus |
| arm_3R | 5227363..5228193 | 36..866 | 100 | | Plus |
BS06475.pep Sequence
Translation from 16 to 867
> BS06475.pep
MSKTSNIMRLALLQLKGSKDKVANVQNAVTKIEAAVKEHKPRLITLPECF
NAPYGTKYFREYSETIPDGYTSQQLSNLARKHQVYIVGGTIPELGENDAI
YNTCTVWSPTGDLVAKHRKMHLFDIDVKGGIRFKESETLSAGNDFTIINV
DGHKIGIGICYDIRFEEMARLYRNAGCEMIIYPAAFNMTTGPLHWELLQR
SRANDNQLFVVTTSPARDTSAEYVAYGHSMVVNPWAKVQQSASEGEEIVV
ADIDFSEVEQVRQQIPVFGQRRLDLYATERKAK*
BS06475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 283 | CG8132-PA | 1..283 | 1..283 | 1473 | 100 | Plus |
| NitFhit-PA | 460 | CG7067-PA | 35..301 | 10..277 | 383 | 34.6 | Plus |
