Clone Sequence Records
BS06476.3prime Sequence
936 bp (760 high quality bases) assembled on 2005-12-03
> BS06476.3prime
ATGGTCTAGAAAGCTTTTAACTCAAATGGAGCACCTGATCAGTAACTCGA
GTAATTAAAGGATCCAGCTCGTGGTCCCCCAACTCCTGGTCCCACAGATC
GTACAGAGTATCCGTGGCTAGATTGACGGAGTTGTTCACGGCGGTTGTGT
TGAATGTTCGAAGGGAGAGGAAGATGACTGCATCCTCCACCAGAGGGCTG
TAGGTATCGCAGATTGTGTGCAGGGCTCGAGCTCCATTCGGCGCAATTTC
ATTTAGGTTCACTATTAAAAAAACCTTTCCATCGTTGATTTTTGATTTGA
ATTGTTCAATCGCCAAACCGTATTCCTTCATGTGCTCCTTCTTCATGTGA
ATCAGCTTTCGGGGACCACCAAAGCACATTGAAGCCTCAATGGCAATTTC
ATCGATCAGTTTCTCCAGCTTTGGATCCTGGTGCAGGAACAAAAATACAC
TGGGGTGCTTGTCCTTTTTGTTAATCAGCCCCTCGATCCCCTTTTGCAGG
GCTCTCCATACTTTTTCCTGCTGCTGGGGATACTTTGTCCTGAGATCCTT
AAAGTCACACTGTTTCTCCTCTATAATGCTGGATCCGTACCCATAGACAA
CCAATAAACCAAATAGAACACCGGCAAGCGCTAGTTTAATACCGATGCCG
TTGTGATGTTCATTGATAGAATTGTGCTGCTCCTGCCTTGAACTCGGCCT
AGAAGTTGAAATACTGCGTCTTCTGGACTGATCGGTGGGTTTGGGAATAC
TGGGTTCGTCATGGGATTCACTTTCTTCCAGTTCGTCGGCCGAAGATGTC
CCTTCCTCGTAGCTTTGTACCGGCTGCCTATTGTAGGAGTGGTCCTGGTC
CACATCGTCCTTTGACTGGGAAAGAGCCCCANGTTCGTTACCATGCAGTG
GTCGTCTCGCCAGATTACTCATGTCGACTGATAACT
BS06476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PA | 906 | CG14103-RA | 1..906 | 922..17 | 4511 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..958 | 922..16 | 4524 | 99.9 | Minus |
CG14103-RA | 1036 | CG14103-RA | 52..958 | 922..16 | 4524 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 368..922 | 2764 | 99.8 | Plus |
3L | 28110227 | 3L | 19804001..19804232 | 16..247 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 19804288..19804410 | 248..370 | 615 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 799..760 | 110 | 75 | Minus |
BS06476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:13 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:54 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:26 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 12..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:31 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 12..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:31 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19803999..19804232 | 12..247 | 99 | <- | Plus |
3L | 19804288..19804409 | 248..369 | 100 | <- | Plus |
3L | 19804477..19805029 | 370..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:26 Download gff for
BS06476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797388..19797509 | 248..369 | 100 | <- | Plus |
arm_3L | 19797099..19797332 | 12..247 | 99 | <- | Plus |
arm_3L | 19797577..19798129 | 370..922 | 99 | | Plus |
BS06476.5prime Sequence
932 bp (847 high quality bases) assembled on 2005-12-03
> BS06476.5prime
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGNAGTTGGGGGACACGAGCTGGATCCTTTAATACTCGAGTACTGATCA
GGTGCTCCATTTGAGTTAAAGCTTTCTAGACC
BS06476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PA | 906 | CG14103-RA | 1..849 | 17..865 | 4226 | 99.8 | Plus |
CG14103-PA | 906 | CG14103-RA | 879..906 | 892..919 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..958 | 17..920 | 4449 | 99.6 | Plus |
CG14103-RA | 1036 | CG14103-RA | 52..958 | 17..920 | 4449 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 571..17 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 19804001..19804232 | 920..692 | 999 | 98.3 | Minus |
3L | 28110227 | 3L | 19804288..19804410 | 691..569 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 02:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 140..179 | 110 | 75 | Plus |
BS06476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:14 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:55 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-PA | 1..906 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:24 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:04 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..960 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:04 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19803999..19804232 | 692..923 | 97 | <- | Minus |
3L | 19804288..19804409 | 570..691 | 100 | <- | Minus |
3L | 19804477..19805029 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:24 Download gff for
BS06476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797099..19797332 | 692..923 | 97 | <- | Minus |
arm_3L | 19797388..19797509 | 570..691 | 100 | <- | Minus |
arm_3L | 19797577..19798129 | 17..569 | 100 | | Minus |
BS06476.complete Sequence
938 bp (938 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635513
> BS06476.complete
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGA
TCAGGTGCTCCATTTGAGTTAAAAGCTTTCTAGACCAT
BS06476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 906 | CG14103-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
CG14103-RA | 906 | CG14103-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-RB | 1221 | CG14103-RB | 52..958 | 17..923 | 4535 | 100 | Plus |
CG14103-RA | 1036 | CG14103-RA | 52..958 | 17..923 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19804475..19805029 | 571..17 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 19804001..19804232 | 923..692 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 19804288..19804410 | 691..569 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 140..179 | 110 | 75 | Plus |
BS06476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:03 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:23 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 41..949 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:28:30 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..955 | 17..920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:04 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 41..949 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:27 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14103-RA | 52..955 | 17..920 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:27 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19804004..19804232 | 692..920 | 100 | <- | Minus |
3L | 19804288..19804409 | 570..691 | 100 | <- | Minus |
3L | 19804477..19805029 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:28:30 Download gff for
BS06476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19797104..19797332 | 692..920 | 100 | <- | Minus |
arm_3L | 19797388..19797509 | 570..691 | 100 | <- | Minus |
arm_3L | 19797577..19798129 | 17..569 | 100 | | Minus |
BS06476.pep Sequence
Translation from 16 to 921
> BS06476.pep
MSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQSYEEGTSSADELEE
SESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSINEHHNGIGIKLALA
GVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEKVWRALQKGIEGLI
NKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGPRKLIHMKKEHMKE
YGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTICDTYSPLVEDAVI
FLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELDPLITRVTDQVLHL
S*
BS06476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14103-PB | 301 | CG14103-PB | 1..301 | 1..301 | 1566 | 100 | Plus |
CG14103-PA | 301 | CG14103-PA | 1..301 | 1..301 | 1566 | 100 | Plus |