Clone BS06476 Report

Search the DGRC for BS06476

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG14103-RA
Protein status:BS06476.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06476.3prime Sequence

936 bp (760 high quality bases) assembled on 2005-12-03

> BS06476.3prime
ATGGTCTAGAAAGCTTTTAACTCAAATGGAGCACCTGATCAGTAACTCGA
GTAATTAAAGGATCCAGCTCGTGGTCCCCCAACTCCTGGTCCCACAGATC
GTACAGAGTATCCGTGGCTAGATTGACGGAGTTGTTCACGGCGGTTGTGT
TGAATGTTCGAAGGGAGAGGAAGATGACTGCATCCTCCACCAGAGGGCTG
TAGGTATCGCAGATTGTGTGCAGGGCTCGAGCTCCATTCGGCGCAATTTC
ATTTAGGTTCACTATTAAAAAAACCTTTCCATCGTTGATTTTTGATTTGA
ATTGTTCAATCGCCAAACCGTATTCCTTCATGTGCTCCTTCTTCATGTGA
ATCAGCTTTCGGGGACCACCAAAGCACATTGAAGCCTCAATGGCAATTTC
ATCGATCAGTTTCTCCAGCTTTGGATCCTGGTGCAGGAACAAAAATACAC
TGGGGTGCTTGTCCTTTTTGTTAATCAGCCCCTCGATCCCCTTTTGCAGG
GCTCTCCATACTTTTTCCTGCTGCTGGGGATACTTTGTCCTGAGATCCTT
AAAGTCACACTGTTTCTCCTCTATAATGCTGGATCCGTACCCATAGACAA
CCAATAAACCAAATAGAACACCGGCAAGCGCTAGTTTAATACCGATGCCG
TTGTGATGTTCATTGATAGAATTGTGCTGCTCCTGCCTTGAACTCGGCCT
AGAAGTTGAAATACTGCGTCTTCTGGACTGATCGGTGGGTTTGGGAATAC
TGGGTTCGTCATGGGATTCACTTTCTTCCAGTTCGTCGGCCGAAGATGTC
CCTTCCTCGTAGCTTTGTACCGGCTGCCTATTGTAGGAGTGGTCCTGGTC
CACATCGTCCTTTGACTGGGAAAGAGCCCCANGTTCGTTACCATGCAGTG
GTCGTCTCGCCAGATTACTCATGTCGACTGATAACT

BS06476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PA 906 CG14103-RA 1..906 922..17 4511 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..958 922..16 4524 99.9 Minus
CG14103-RA 1036 CG14103-RA 52..958 922..16 4524 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 368..922 2764 99.8 Plus
3L 28110227 3L 19804001..19804232 16..247 1160 100 Plus
3L 28110227 3L 19804288..19804410 248..370 615 100 Plus
Blast to na_te.dros performed 2015-02-10 21:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 799..760 110 75 Minus

BS06476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:13 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:54 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:26 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 12..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:31 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 12..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:31 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19803999..19804232 12..247 99 <- Plus
3L 19804288..19804409 248..369 100 <- Plus
3L 19804477..19805029 370..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:26 Download gff for BS06476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797388..19797509 248..369 100 <- Plus
arm_3L 19797099..19797332 12..247 99 <- Plus
arm_3L 19797577..19798129 370..922 99   Plus

BS06476.5prime Sequence

932 bp (847 high quality bases) assembled on 2005-12-03

> BS06476.5prime
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGNAGTTGGGGGACACGAGCTGGATCCTTTAATACTCGAGTACTGATCA
GGTGCTCCATTTGAGTTAAAGCTTTCTAGACC

BS06476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PA 906 CG14103-RA 1..849 17..865 4226 99.8 Plus
CG14103-PA 906 CG14103-RA 879..906 892..919 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..958 17..920 4449 99.6 Plus
CG14103-RA 1036 CG14103-RA 52..958 17..920 4449 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 571..17 2775 100 Minus
3L 28110227 3L 19804001..19804232 920..692 999 98.3 Minus
3L 28110227 3L 19804288..19804410 691..569 615 100 Minus
Blast to na_te.dros performed 2015-02-04 02:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 140..179 110 75 Plus

BS06476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:14 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:55 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-PA 1..906 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:52:24 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 17..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:04 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..960 17..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:04 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19803999..19804232 692..923 97 <- Minus
3L 19804288..19804409 570..691 100 <- Minus
3L 19804477..19805029 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:52:24 Download gff for BS06476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797099..19797332 692..923 97 <- Minus
arm_3L 19797388..19797509 570..691 100 <- Minus
arm_3L 19797577..19798129 17..569 100   Minus

BS06476.complete Sequence

938 bp (938 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635513

> BS06476.complete
GAAGTTATCAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTA
ACGAACCTGGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCAC
TCCTACAATAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGC
CGACGAACTGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAAC
CCACCGATCAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCA
AGGCAGGAGCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTAT
TAAACTAGCGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGT
ACGGATCCAGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGG
ACAAAGTATCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGG
GATCGAGGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGT
TCCTGCACCAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATT
GAGGCTTCAATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAA
GGAGCACATGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAA
TCAACGATGGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCG
AATGGAGCTCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGT
GGAGGATGCAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCG
TGAACAACTCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGAC
CAGGAGTTGGGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGA
TCAGGTGCTCCATTTGAGTTAAAAGCTTTCTAGACCAT

BS06476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 906 CG14103-PB 1..906 17..922 4530 100 Plus
CG14103-RA 906 CG14103-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RB 1221 CG14103-RB 52..958 17..923 4535 100 Plus
CG14103-RA 1036 CG14103-RA 52..958 17..923 4535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805029 571..17 2775 100 Minus
3L 28110227 3L 19804001..19804232 923..692 1160 100 Minus
3L 28110227 3L 19804288..19804410 691..569 615 100 Minus
Blast to na_te.dros performed 2014-11-27 10:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 140..179 110 75 Plus

BS06476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:15:03 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:23 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 41..949 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:28:30 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..955 17..920 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:15:04 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 41..949 17..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:27 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 52..955 17..920 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:27 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19804004..19804232 692..920 100 <- Minus
3L 19804288..19804409 570..691 100 <- Minus
3L 19804477..19805029 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:28:30 Download gff for BS06476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797104..19797332 692..920 100 <- Minus
arm_3L 19797388..19797509 570..691 100 <- Minus
arm_3L 19797577..19798129 17..569 100   Minus

BS06476.pep Sequence

Translation from 16 to 921

> BS06476.pep
MSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQSYEEGTSSADELEE
SESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSINEHHNGIGIKLALA
GVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEKVWRALQKGIEGLI
NKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGPRKLIHMKKEHMKE
YGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTICDTYSPLVEDAVI
FLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELDPLITRVTDQVLHL
S*

BS06476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PB 301 CG14103-PB 1..301 1..301 1566 100 Plus
CG14103-PA 301 CG14103-PA 1..301 1..301 1566 100 Plus