Clone Sequence Records
BS06477.3prime Sequence
906 bp (846 high quality bases) assembled on 2005-12-03
> BS06477.3prime
ATGGTCTAGAAAGCTTTCAGTTGGAATCCTCTGAGCTGTCACTGTAGGCA
GCCAAGAGGGAAAGTCCAGCTGGAGCGGCAGCTGGCTGATTTGTAGCTTT
AGTTTCCGCTGGTGCAGACACAACTGAGGGCGTGGTTGCGGCTGGTTTGG
ATTCAACTTGCGTCGTTCCAGTGGCTACCGTGGGCTTTGCTACTGCGGTT
GCCTTGGGCTTGACCAGCACCAATGGTGTCTTCCTTTTAACCATTGACTG
CGCTGCGGATGCTTTGCTGGAGGATGTGGCGGAAAGACTGATCGTGCTGG
GCTTGGCCTGTTTGGCTGGTGGAGGAGCTGACGGTGTGTCCAACGGTTCA
TCCTTGATCTCCTCAATGATTTCCTCAGCGACAACACGAGAGCTTCCTTC
TGGCTTGTTCTTAAAGTTTACGGACTTAATAAAATCCTCGTCTTCGCGCT
CCTCCCGCTCCTGGCGCTCTCTCTCCGTCTCCACCGTGTTGTACTGCTGC
AGCAGAGTGTTGTAGTCCACTGTCTGCTGACGCCGGTTGAGATCACGCAA
CTCCTCCAGGCTCTCGATCGTTTCGATCTCGTTGCGCGACTGTTGGGTGC
GATTCTCGAGCAGCTTCATCGGATTGTTGGCCTCCTCATCGCGCAATTCC
TGCTCCTCGCGACGTGCCTGTTCCTCGGCCAACTTGAGTGCCATGAAATT
CCTGGTGGCCCCCGCCTCAATCTCGTAGTCCGTGTTCTGTGGATCTGTCT
TGAAGGAGATCTCCTGCAGGCAGCGCGTGCACTTGATGTAGAACCGATAG
ATCCTGATGCCCAGGTACGTTTCGTTCTCCACGTCCTCCTTGCGAGCGTT
GAATTTCTTGCCCTTGTATATGTATTCCCCACACGTTTTGCAGCGCATAT
TAAATG
BS06477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 1002 | CG8435-RA | 113..1002 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 191..1080 | 906..17 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170617 | 424..906 | 2415 | 100 | Plus |
| 2R | 25286936 | 2R | 16169668..16170080 | 17..429 | 2050 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:59:09 has no hits.
BS06477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:15 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 113..1002 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:56 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 113..1002 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:35 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 191..1091 | 7..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:30 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 191..1091 | 7..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:30 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169657..16170076 | 7..425 | 99 | <- | Plus |
| 2R | 16170137..16170617 | 426..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:35 Download gff for
BS06477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057162..12057581 | 7..425 | 99 | <- | Plus |
| arm_2R | 12057642..12058122 | 426..906 | 100 | | Plus |
BS06477.5prime Sequence
873 bp (785 high quality bases) assembled on 2005-12-03
> BS06477.5prime
GAAGTTATCAGTCGACATGTCCGAGCGAAAGGTCTTAAACAAATACTATC
CCCCGGACTTCGATCCATCGAAGATTCCGCGCATGAAACTGGCCAAAAAC
CGGCAGTACACCGTGAGATTGATGGCTCCATTTAATATGCGCTGCAAAAC
GTGTGGGGAATACATATACAAGGGCAAGAAATTCAACGCTCGCAAGGAGG
ACGTGGAGAACGAAACGTACCTGGGCATCAGGATCTATCGGTTCTACATC
AAGTGCACGCGCTGCCTGCAGGAGATCTCCTTCAAGACAGATCCACAGAA
CACGGACTACGAGATTGAGGCGGGGGCCACCAGGAATTTCATGGCACTCA
AGTTGGCCGAGGAACAGGCACGTCGCGAGGAGCAGGAATTGCGCGATGAG
GAGGCCAACAATCCGATGAAGCTGCTCGAGAATCGCACCCAACAGTCGCG
CAACGAGATCGAAACGATCGAGAGCCTGGAGGAGTTGCGTGATCTCAACC
GGCGTCAGCAGACAGTGGACTACAACACTCTGCTGCAGCAGTACAACACG
GTGGAGACGGAGAGAGAGCGCCAGGAGCGGGAGGAGCGCGAAGACGAGGA
TTTTATTAAGTCCGTAAACTTTAAGAACAAGCCAGAAGGAAGCTCTCGTG
TTGTCGCTGAGGAAATCATTGAGGAGATCAAGGATGAACCGTTGGACACA
CCGTCAGCTCCTCCACCAGCCAAACAGGCCAAGCCCAGCACGATCAGTCT
TTCCGCCACATCCTCCAGCAAAGCATCCGCAGCGCAGTCAATGGTTAAAA
GGAAGACACCATTGGTGCTGGTCAAGCCCAAGGCAACCGCAGTAGCAAAG
CCCACGGTAGCCACTGGGACGAC
BS06477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 1002 | CG8435-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 79..935 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170705 | 611..41 | 2855 | 100 | Minus |
| 2R | 25286936 | 2R | 16169813..16170080 | 873..606 | 1310 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:35:39 has no hits.
BS06477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:16 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:21:58 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:23:31 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 71..935 | 8..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:22 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 71..935 | 8..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:22 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169813..16170076 | 610..873 | 99 | <- | Minus |
| 2R | 16170137..16170705 | 41..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:23:31 Download gff for
BS06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057318..12057581 | 610..873 | 99 | <- | Minus |
| arm_2R | 12057642..12058210 | 41..609 | 100 | <- | Minus |
BS06477.complete Sequence
1034 bp (1034 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635514
> BS06477.complete
GAAGTTATCAGTCGACATGTCCGAGCGAAAGGTCTTAAACAAATACTATC
CCCCGGACTTCGATCCATCGAAGATTCCGCGCATGAAACTGGCCAAAAAC
CGGCAGTACACCGTGAGATTGATGGCTCCATTTAATATGCGCTGCAAAAC
GTGTGGGGAATACATATACAAGGGCAAGAAATTCAACGCTCGCAAGGAGG
ACGTGGAGAACGAAACGTACCTGGGCATCAGGATCTATCGGTTCTACATC
AAGTGCACGCGCTGCCTGCAGGAGATCTCCTTCAAGACAGATCCACAGAA
CACGGACTACGAGATTGAGGCGGGGGCCACCAGGAATTTCATGGCACTCA
AGTTGGCCGAGGAACAGGCACGTCGCGAGGAGCAGGAATTGCGCGATGAG
GAGGCCAACAATCCGATGAAGCTGCTCGAGAATCGCACCCAACAGTCGCG
CAACGAGATCGAAACGATCGAGAGCCTGGAGGAGTTGCGTGATCTCAACC
GGCGTCAGCAGACAGTGGACTACAACACTCTGCTGCAGCAGTACAACACG
GTGGAGACGGAGAGAGAGCGCCAGGAGCGGGAGGAGCGCGAAGACGAGGA
TTTTATTAAGTCCGTAAACTTTAAGAACAAGCCAGAAGGAAGCTCTCGTG
TTGTCGCTGAGGAAATCATTGAGGAGATCAAGGATGAACCGTTGGACACA
CCGTCAGCTCCTCCACCAGCCAAACAGGCCAAGCCCAGCACGATCAGTCT
TTCCGCCACATCCTCCAGCAAAGCATCCGCAGCGCAGTCAATGGTTAAAA
GGAAGACACCATTGGTGCTGGTCAAGCCCAAGGCAACCGCAGTAGCAAAG
CCCACGGTAGCCACTGGAACGACGCAAGTTGAATCCAAACCAGCCGCAAC
CACGCCCTCAGTTGTGTCTGCACCAGCGGAAACTAAAGCTACAAATCAGC
CAGCTGCCGCTCCAGCTGGACTTTCCCTCTTGGCTGCCTACAGTGACAGC
TCAGAGGATTCCAACTGAAAGCTTTCTAGACCAT
BS06477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1002 | CG8435-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-RA | 1148 | CG8435-RA | 79..1080 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16170135..16170705 | 611..41 | 2855 | 100 | Minus |
| 2R | 25286936 | 2R | 16169668..16170080 | 1018..606 | 2050 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:27 has no hits.
BS06477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:45 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 1..1002 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:02 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 59..1079 | 8..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:20 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 79..1079 | 17..1017 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:46 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 59..1079 | 8..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:02 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8435-RA | 79..1079 | 17..1017 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:02 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16169669..16170076 | 610..1017 | 100 | <- | Minus |
| 2R | 16170137..16170705 | 41..609 | 100 | <- | Minus |
| 2R | 16170760..16170783 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:20 Download gff for
BS06477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12057174..12057581 | 610..1017 | 100 | <- | Minus |
| arm_2R | 12057642..12058210 | 41..609 | 100 | <- | Minus |
| arm_2R | 12058265..12058288 | 17..40 | 100 | | Minus |
BS06477.pep Sequence
Translation from 16 to 1017
> BS06477.pep
MSERKVLNKYYPPDFDPSKIPRMKLAKNRQYTVRLMAPFNMRCKTCGEYI
YKGKKFNARKEDVENETYLGIRIYRFYIKCTRCLQEISFKTDPQNTDYEI
EAGATRNFMALKLAEEQARREEQELRDEEANNPMKLLENRTQQSRNEIET
IESLEELRDLNRRQQTVDYNTLLQQYNTVETERERQEREEREDEDFIKSV
NFKNKPEGSSRVVAEEIIEEIKDEPLDTPSAPPPAKQAKPSTISLSATSS
SKASAAQSMVKRKTPLVLVKPKATAVAKPTVATGTTQVESKPAATTPSVV
SAPAETKATNQPAAAPAGLSLLAAYSDSSEDSN*
BS06477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8435-PA | 333 | CG8435-PA | 1..333 | 1..333 | 1687 | 100 | Plus |
| CG15084-PA | 316 | CG15084-PA | 1..204 | 1..195 | 185 | 26.9 | Plus |
