Clone BS06480 Report

Search the DGRC for BS06480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptmgr-RA
Protein status:BS06480.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06480.3prime Sequence

615 bp (563 high quality bases) assembled on 2005-12-03

> BS06480.3prime
ATGGTCTAGAAAGCTTTTAGGATGGGGTAGTGGCGGTGGTCTTGGTAGCG
GCCTGCCGCTTTTTCACGCCCCAGTTGTAGACCCGCGCCATGTTCACCTC
CGTAGTTGTGATTTGATCCCTCAGAAAATCCTGATCGTGCTCCACGGACT
TTAGGTTGCCCACGGCCGATGTGATGTTCTGGTTCAGCAGAGCCTCCGCC
TCGTCTAGCGGATACTCCAGCATCACGCTGGCCCCCAGCCAGAGGTATAC
TGTTTTCGTGGGCGGCACCAGTGTCTTGATGAACACCTGGTCGCTGAGCA
GGAATTGCGTCTCGCGCTCCTCGTCCTCCTTGCGAAGCACATTGACCATT
TCCAGGGAGCGCTCCAGGTCCGGAATTTGAGACTTCAACTTGCGCCGCCG
CGCCTCCAGATTGCAGGCCATGAATCGATACTTGCCGTGCTGCTCGTCCA
GTCGCTGCAGCACCTTTTCGCAATTTTCGTTCTCCGGCTGCGACATGAAG
GTGTCGATCTCCTCCAGGAACACTGCCTCCGGGATGCCGGCGAAGGTCTT
CTGGTTTTCCGGTAATAGGGGCATTTCCACCGAGTCCATTATTCCTGTCA
TGTCGACTGATAACT

BS06480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6719-PA 585 CG6719-RA 1..585 601..17 2875 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..692 601..17 2895 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 119..515 1985 100 Plus
3R 32079331 3R 11409046..11409150 17..121 525 100 Plus
3R 32079331 3R 11409681..11409768 514..601 410 97.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:01:03 has no hits.

BS06480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:21 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..601 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:05 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..601 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:27 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..692 17..609 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..692 17..609 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11409046..11409148 17..119 100 <- Plus
3R 11409210..11409604 120..514 100 <- Plus
3R 11409682..11409772 515..609 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:27 Download gff for BS06480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7235404..7235494 515..609 93   Plus
arm_3R 7234768..7234870 17..119 100 <- Plus
arm_3R 7234932..7235326 120..514 100 <- Plus

BS06480.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS06480.5prime
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCTA
AAAGCTTTCTAGACC

BS06480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6719-PA 585 CG6719-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..692 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 499..103 1985 100 Minus
3R 32079331 3R 11409046..11409150 601..497 525 100 Minus
3R 32079331 3R 11409681..11409768 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:44:10 has no hits.

BS06480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:22 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:06 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6719-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:09:35 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..692 9..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:51 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 104..692 9..601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:51 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11409046..11409148 499..601 100 <- Minus
3R 11409210..11409604 104..498 100 <- Minus
3R 11409682..11409772 9..103 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:09:35 Download gff for BS06480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7234932..7235326 104..498 100 <- Minus
arm_3R 7235404..7235494 9..103 95   Minus
arm_3R 7234768..7234870 499..601 100 <- Minus

BS06480.complete Sequence

617 bp assembled on 2007-10-17

GenBank Submission: FJ635515

> BS06480.complete
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCTA
AAAGCTTTCTAGACCAT

BS06480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 585 CG6719-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-RA 946 CG6719-RA 108..692 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11409209..11409605 499..103 1985 100 Minus
3R 32079331 3R 11409046..11409150 601..497 525 100 Minus
3R 32079331 3R 11409681..11409768 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:37:36 has no hits.

BS06480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:03 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:53 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 106..694 9..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:50 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 108..690 17..599 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:13 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG6719-RA 110..692 17..599 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:23 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
mgr-RA 108..690 17..599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:23 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11409048..11409148 499..599 100 <- Minus
3R 11409210..11409604 104..498 100 <- Minus
3R 11409682..11409768 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:50 Download gff for BS06480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7234770..7234870 499..599 100 <- Minus
arm_3R 7234932..7235326 104..498 100 <- Minus
arm_3R 7235404..7235490 17..103 100   Minus

BS06480.pep Sequence

Translation from 16 to 600

> BS06480.pep
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPS*

BS06480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
mgr-PA 194 CG6719-PA 1..194 1..194 993 100 Plus
CG15676-PB 182 CG15676-PB 1..181 1..180 209 28.6 Plus
CG15676-PA 182 CG15676-PA 1..181 1..180 209 28.6 Plus