Clone Sequence Records
BS06480.3prime Sequence
615 bp (563 high quality bases) assembled on 2005-12-03
> BS06480.3prime
ATGGTCTAGAAAGCTTTTAGGATGGGGTAGTGGCGGTGGTCTTGGTAGCG
GCCTGCCGCTTTTTCACGCCCCAGTTGTAGACCCGCGCCATGTTCACCTC
CGTAGTTGTGATTTGATCCCTCAGAAAATCCTGATCGTGCTCCACGGACT
TTAGGTTGCCCACGGCCGATGTGATGTTCTGGTTCAGCAGAGCCTCCGCC
TCGTCTAGCGGATACTCCAGCATCACGCTGGCCCCCAGCCAGAGGTATAC
TGTTTTCGTGGGCGGCACCAGTGTCTTGATGAACACCTGGTCGCTGAGCA
GGAATTGCGTCTCGCGCTCCTCGTCCTCCTTGCGAAGCACATTGACCATT
TCCAGGGAGCGCTCCAGGTCCGGAATTTGAGACTTCAACTTGCGCCGCCG
CGCCTCCAGATTGCAGGCCATGAATCGATACTTGCCGTGCTGCTCGTCCA
GTCGCTGCAGCACCTTTTCGCAATTTTCGTTCTCCGGCTGCGACATGAAG
GTGTCGATCTCCTCCAGGAACACTGCCTCCGGGATGCCGGCGAAGGTCTT
CTGGTTTTCCGGTAATAGGGGCATTTCCACCGAGTCCATTATTCCTGTCA
TGTCGACTGATAACT
BS06480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6719-PA | 585 | CG6719-RA | 1..585 | 601..17 | 2875 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..692 | 601..17 | 2895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 119..515 | 1985 | 100 | Plus |
3R | 32079331 | 3R | 11409046..11409150 | 17..121 | 525 | 100 | Plus |
3R | 32079331 | 3R | 11409681..11409768 | 514..601 | 410 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:01:03 has no hits.
BS06480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:21 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..601 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:05 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:44:27 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..692 | 17..609 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..692 | 17..609 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409046..11409148 | 17..119 | 100 | <- | Plus |
3R | 11409210..11409604 | 120..514 | 100 | <- | Plus |
3R | 11409682..11409772 | 515..609 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:44:27 Download gff for
BS06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7235404..7235494 | 515..609 | 93 | | Plus |
arm_3R | 7234768..7234870 | 17..119 | 100 | <- | Plus |
arm_3R | 7234932..7235326 | 120..514 | 100 | <- | Plus |
BS06480.5prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-03
> BS06480.5prime
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCTA
AAAGCTTTCTAGACC
BS06480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6719-PA | 585 | CG6719-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..692 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 499..103 | 1985 | 100 | Minus |
3R | 32079331 | 3R | 11409046..11409150 | 601..497 | 525 | 100 | Minus |
3R | 32079331 | 3R | 11409681..11409768 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:44:10 has no hits.
BS06480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:22 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:06 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:09:35 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..692 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:51 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 104..692 | 9..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:51 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409046..11409148 | 499..601 | 100 | <- | Minus |
3R | 11409210..11409604 | 104..498 | 100 | <- | Minus |
3R | 11409682..11409772 | 9..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:09:35 Download gff for
BS06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7234932..7235326 | 104..498 | 100 | <- | Minus |
arm_3R | 7235404..7235494 | 9..103 | 95 | | Minus |
arm_3R | 7234768..7234870 | 499..601 | 100 | <- | Minus |
BS06480.complete Sequence
617 bp assembled on 2007-10-17
GenBank Submission: FJ635515
> BS06480.complete
GAAGTTATCAGTCGACATGACAGGAATAATGGACTCGGTGGAAATGCCCA
AATTACCGGAAAACCAGAAGACCTTCGCCGGCATCCCGGAGGCAGTGTTC
CTGGAGGAGATCGACACCTTCATGTCGCAGCCGGAGAACGAAAATTGCGA
AAAGGTGCTGCAGCGACTGGACGAGCAGCACGGCAAGTATCGATTCATGG
CCTGCAATCTGGAGGCGCGGCGGCGCAAGTTGAAGTCTCAAATTCCGGAC
CTGGAGCGCTCCCTGGAAATGGTCAATGTGCTTCGCAAGGAGGACGAGGA
GCGCGAGACGCAATTCCTGCTCAGCGACCAGGTGTTCATCAAGACACTGG
TGCCGCCCACGAAAACAGTATACCTCTGGCTGGGGGCCAGCGTGATGCTG
GAGTATCCGCTAGACGAGGCGGAGGCTCTGCTGAACCAGAACATCACATC
GGCCGTGGGCAACCTAAAGTCCGTGGAGCACGATCAGGATTTTCTGAGGG
ATCAAATCACAACTACGGAGGTGAACATGGCGCGGGTCTACAACTGGGGC
GTGAAAAAGCGGCAGGCCGCTACCAAGACCACCGCCACTACCCCATCCTA
AAAGCTTTCTAGACCAT
BS06480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 585 | CG6719-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-RA | 946 | CG6719-RA | 108..692 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11409209..11409605 | 499..103 | 1985 | 100 | Minus |
3R | 32079331 | 3R | 11409046..11409150 | 601..497 | 525 | 100 | Minus |
3R | 32079331 | 3R | 11409681..11409768 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:37:36 has no hits.
BS06480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:03 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:53 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 106..694 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:50 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 108..690 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:13 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6719-RA | 110..692 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:23 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mgr-RA | 108..690 | 17..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:23 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11409048..11409148 | 499..599 | 100 | <- | Minus |
3R | 11409210..11409604 | 104..498 | 100 | <- | Minus |
3R | 11409682..11409768 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:50 Download gff for
BS06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7234770..7234870 | 499..599 | 100 | <- | Minus |
arm_3R | 7234932..7235326 | 104..498 | 100 | <- | Minus |
arm_3R | 7235404..7235490 | 17..103 | 100 | | Minus |
BS06480.pep Sequence
Translation from 16 to 600
> BS06480.pep
MTGIMDSVEMPKLPENQKTFAGIPEAVFLEEIDTFMSQPENENCEKVLQR
LDEQHGKYRFMACNLEARRRKLKSQIPDLERSLEMVNVLRKEDEERETQF
LLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNL
KSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQAATKTTATTPS*
BS06480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mgr-PA | 194 | CG6719-PA | 1..194 | 1..194 | 993 | 100 | Plus |
CG15676-PB | 182 | CG15676-PB | 1..181 | 1..180 | 209 | 28.6 | Plus |
CG15676-PA | 182 | CG15676-PA | 1..181 | 1..180 | 209 | 28.6 | Plus |