Clone BS06482 Report

Search the DGRC for BS06482

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS7-RA
Protein status:BS06482.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06482.3prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-03

> BS06482.3prime
ATGGTCTAGAAAGCTTTTAGCTCCATCGGTAATGTGCGTAGGCGCGGTTG
CTTTCGCACAGCCTGTGCAGATCGTCCTTTCGCTTGATGACCCTTCCCTG
GCCATGGGCTGCGTCGAGAATCTCCCAGGCCAACTTTTCCGGCAGGGACA
CCTTACGCTCCTTCTCGCGGGCAGCTTCCAAGAGCCACTTCATGGCCAGA
AAATATGACCGCTTCGTGGTGATGGGAACAGGGACTTGATAGGTGACACC
ACCACGTTTTATGGCGGTCACTTGAAGGAGCGGTCGGCAGTTTTCAACCG
CTTGTTTCAGAAGCGTTTCGGGATTGGTGTTTATGGTTGTCTTCTCCCCT
TTGGCCAGATTCATGTGCTCCGTCTGGGTTCGTTTTATTAGCTCCAGCGT
CTTGGACAAAAGCGTTCTGGCCAAGGCACTGTTCCCCTTTTTCGTTATAT
AATTGATCATTTTATGTTTTGTATCGTCGTGAAAGATGGTATCAGACGAT
TTGTTGACCGCCGCCTTGATGGGCACATGGTAAAGCTTGGACAGATCATT
CTTTTGCTCTAGTTGTTTATATTTTTGTACAATTGGTTCGACATAGTGTG
TGGGATACACCGACATCAATCGAAGGCAGCTGAGCCTTGAAGTTTTCTCT
GCAATCCTACCTAAAAGCGACATGTCGACTGATAACT

BS06482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5108-PA 657 mRpS7-RA 1..657 673..17 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..740 675..16 3300 100 Minus
mRpS7-RA 789 CG5108-RA 81..740 675..16 3300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387475 631..16 3080 100 Minus
2L 23513712 2L 10386742..10386787 675..630 230 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:21:09 has no hits.

BS06482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:23 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:08 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5108-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:35:53 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..743 13..683 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:08 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..743 13..683 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:08 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10386736..10386787 630..683 92 -> Minus
2L 10386862..10387478 13..629 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:35:53 Download gff for BS06482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386736..10386787 630..683 92 -> Minus
arm_2L 10386862..10387478 13..629 99   Minus

BS06482.5prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-03

> BS06482.5prime
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCTAAAAGCTTTCTAGACC

BS06482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5108-PA 657 mRpS7-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..740 15..674 3300 100 Plus
mRpS7-RA 789 CG5108-RA 81..740 15..674 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387475 59..674 3080 100 Plus
2L 23513712 2L 10386742..10386787 15..60 230 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:32:32 has no hits.

BS06482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:24 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:09 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5108-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:01 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..743 7..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:44 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 75..743 7..677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:44 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10386736..10386787 7..60 92 -> Plus
2L 10386862..10387478 61..677 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:01 Download gff for BS06482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386736..10386787 7..60 92 -> Plus
arm_2L 10386862..10387478 61..677 99   Plus

BS06482.complete Sequence

689 bp (689 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635516

> BS06482.complete
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCTAAAAGCTTTCTAGACCAT

BS06482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 657 CG5108-PB 1..657 17..673 3285 100 Plus
mRpS7-RA 657 CG5108-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-RB 917 CG5108-RB 81..740 15..674 3300 100 Plus
mRpS7-RA 789 CG5108-RA 81..740 15..674 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10386860..10387475 59..674 3080 100 Plus
2L 23513712 2L 10386742..10386787 15..60 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:55:02 has no hits.

BS06482.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:47 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:04 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 73..741 7..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:10 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 83..737 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:47 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 73..741 7..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:25 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS7-RA 83..737 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:25 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10386744..10386787 17..60 100 -> Plus
2L 10386862..10387472 61..671 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:10 Download gff for BS06482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10386744..10386787 17..60 100 -> Plus
arm_2L 10386862..10387472 61..671 100   Plus

BS06482.pep Sequence

Translation from 16 to 672

> BS06482.pep
MSLLGRIAEKTSRLSCLRLMSVYPTHYVEPIVQKYKQLEQKNDLSKLYHV
PIKAAVNKSSDTIFHDDTKHKMINYITKKGNSALARTLLSKTLELIKRTQ
TEHMNLAKGEKTTINTNPETLLKQAVENCRPLLQVTAIKRGGVTYQVPVP
ITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHGQGRVIKRKD
DLHRLCESNRAYAHYRWS*

BS06482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS7-PB 218 CG5108-PB 1..218 1..218 1124 100 Plus
mRpS7-PA 218 CG5108-PA 1..218 1..218 1124 100 Plus