Clone Sequence Records
BS06482.3prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-03
> BS06482.3prime
ATGGTCTAGAAAGCTTTTAGCTCCATCGGTAATGTGCGTAGGCGCGGTTG
CTTTCGCACAGCCTGTGCAGATCGTCCTTTCGCTTGATGACCCTTCCCTG
GCCATGGGCTGCGTCGAGAATCTCCCAGGCCAACTTTTCCGGCAGGGACA
CCTTACGCTCCTTCTCGCGGGCAGCTTCCAAGAGCCACTTCATGGCCAGA
AAATATGACCGCTTCGTGGTGATGGGAACAGGGACTTGATAGGTGACACC
ACCACGTTTTATGGCGGTCACTTGAAGGAGCGGTCGGCAGTTTTCAACCG
CTTGTTTCAGAAGCGTTTCGGGATTGGTGTTTATGGTTGTCTTCTCCCCT
TTGGCCAGATTCATGTGCTCCGTCTGGGTTCGTTTTATTAGCTCCAGCGT
CTTGGACAAAAGCGTTCTGGCCAAGGCACTGTTCCCCTTTTTCGTTATAT
AATTGATCATTTTATGTTTTGTATCGTCGTGAAAGATGGTATCAGACGAT
TTGTTGACCGCCGCCTTGATGGGCACATGGTAAAGCTTGGACAGATCATT
CTTTTGCTCTAGTTGTTTATATTTTTGTACAATTGGTTCGACATAGTGTG
TGGGATACACCGACATCAATCGAAGGCAGCTGAGCCTTGAAGTTTTCTCT
GCAATCCTACCTAAAAGCGACATGTCGACTGATAACT
BS06482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5108-PA | 657 | mRpS7-RA | 1..657 | 673..17 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..740 | 675..16 | 3300 | 100 | Minus |
mRpS7-RA | 789 | CG5108-RA | 81..740 | 675..16 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387475 | 631..16 | 3080 | 100 | Minus |
2L | 23513712 | 2L | 10386742..10386787 | 675..630 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:21:09 has no hits.
BS06482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:23 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:08 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5108-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:35:53 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..743 | 13..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:08 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..743 | 13..683 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:08 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386736..10386787 | 630..683 | 92 | -> | Minus |
2L | 10386862..10387478 | 13..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:35:53 Download gff for
BS06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386736..10386787 | 630..683 | 92 | -> | Minus |
arm_2L | 10386862..10387478 | 13..629 | 99 | | Minus |
BS06482.5prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-03
> BS06482.5prime
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCTAAAAGCTTTCTAGACC
BS06482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5108-PA | 657 | mRpS7-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..740 | 15..674 | 3300 | 100 | Plus |
mRpS7-RA | 789 | CG5108-RA | 81..740 | 15..674 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387475 | 59..674 | 3080 | 100 | Plus |
2L | 23513712 | 2L | 10386742..10386787 | 15..60 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:32:32 has no hits.
BS06482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:24 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:09 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5108-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:17:01 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..743 | 7..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:44 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 75..743 | 7..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:44 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386736..10386787 | 7..60 | 92 | -> | Plus |
2L | 10386862..10387478 | 61..677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:17:01 Download gff for
BS06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386736..10386787 | 7..60 | 92 | -> | Plus |
arm_2L | 10386862..10387478 | 61..677 | 99 | | Plus |
BS06482.complete Sequence
689 bp (689 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635516
> BS06482.complete
GAAGTTATCAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTT
CAAGGCTCAGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTC
GAACCAATTGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTC
CAAGCTTTACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATA
CCATCTTTCACGACGATACAAAACATAAAATGATCAATTATATAACGAAA
AAGGGGAACAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCT
AATAAAACGAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGA
CAACCATAAACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAAC
TGCCGACCGCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTA
TCAAGTCCCTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGA
AGTGGCTCTTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCG
GAAAAGTTGGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGT
CATCAAGCGAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCT
ACGCACATTACCGATGGAGCTAAAAGCTTTCTAGACCAT
BS06482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 657 | CG5108-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
mRpS7-RA | 657 | CG5108-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-RB | 917 | CG5108-RB | 81..740 | 15..674 | 3300 | 100 | Plus |
mRpS7-RA | 789 | CG5108-RA | 81..740 | 15..674 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10386860..10387475 | 59..674 | 3080 | 100 | Plus |
2L | 23513712 | 2L | 10386742..10386787 | 15..60 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:55:02 has no hits.
BS06482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:47 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:04 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 73..741 | 7..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:10 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 83..737 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:47 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 73..741 | 7..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:25 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS7-RA | 83..737 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:25 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10386744..10386787 | 17..60 | 100 | -> | Plus |
2L | 10386862..10387472 | 61..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:10 Download gff for
BS06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10386744..10386787 | 17..60 | 100 | -> | Plus |
arm_2L | 10386862..10387472 | 61..671 | 100 | | Plus |
BS06482.pep Sequence
Translation from 16 to 672
> BS06482.pep
MSLLGRIAEKTSRLSCLRLMSVYPTHYVEPIVQKYKQLEQKNDLSKLYHV
PIKAAVNKSSDTIFHDDTKHKMINYITKKGNSALARTLLSKTLELIKRTQ
TEHMNLAKGEKTTINTNPETLLKQAVENCRPLLQVTAIKRGGVTYQVPVP
ITTKRSYFLAMKWLLEAAREKERKVSLPEKLAWEILDAAHGQGRVIKRKD
DLHRLCESNRAYAHYRWS*
BS06482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS7-PB | 218 | CG5108-PB | 1..218 | 1..218 | 1124 | 100 | Plus |
mRpS7-PA | 218 | CG5108-PA | 1..218 | 1..218 | 1124 | 100 | Plus |