Clone BS06483 Report

Search the DGRC for BS06483

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptEndoG-RA
Protein status:BS06483.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06483.3prime Sequence

952 bp (823 high quality bases) assembled on 2005-12-03

> BS06483.3prime
ATGGTCTAGAAAGCTTCTAGACTTTCTTGCCATTGATGGTGGTTAGCTGC
TTGCGATTGATTTGATCGAAGAAGAGCAATCCCGCCGAGCGTTCCACGCT
CTCTGGCGGCACCTGAAACACACTGATGGGAGTGTCGTTGCTGATCACCT
GATTGGGCATCACGTACGACTCCATGTGGAGTTTGTGGTCCGCGGACTCG
CCCACAATAACCTTGTAGAAGTGGGTGGGAACAGCCACGGTGTTGGCGCC
GATGACCTCGTACTTGACATACGATTTCCCATCGTCCTCCTTGTGCGGTA
GGTACAGTGGACCCGTACAGACGTACACATTGGAGTAGGTCTTGGTCAGT
CTGCGCACGTGTGCCTCCAGCGTGTTCCAGGCATCCCGGTTGAAGCCCTG
GCCCACCTGTGGCGCCATGTTCGATAGGTAGAAGGTTTCGTCGCAGTGCT
TCTGGTGCAGTCGGTGATTTCCAGCGGCGGCCATGTGCCCGCGATCATAG
CCCGATCGTCGGTAGTCCGTGTTCTGTGACCTGAAGAACGGATGGATGCT
CTCGTCCTGCTTGAAATCGCACTTCGATCTGTCCACGGCATCGTTCTTCG
CCACCGACTCTGCCGTAAGGTGCTCGAACACCCAGTGGGGCACCCGGTTC
CTCCGATCGTAAGACAGCACGTAGTCCGAATGGGAGCGCACGTGATCGAG
TCCGGGAAATCCATACTTCATGATCTGTCCGATCCGAGACGGAGTTGCCG
TCAAGCTTACATTGTTCTCTTGGGCGGGAATCAAACTGGCAGCCGAAACA
GTTCCAAAGGTGGGCAGACCAGGCAGCCGCGGAAGGCCACTTGTGGAGCC
ATTGTGCTGGCGTTCGCGTTCCACGTGGGTGCCCAGATAAAAAGCGCCCA
GGGCGGGTGGCACCCAAAGCTTATACGCCACCCACTCGAGGAGCACTCAT
GT

BS06483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8862-PA 933 CG8862-RA 44..933 906..17 4425 99.8 Minus
CG8862-PA 933 CG8862-RA 1..45 950..906 200 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
EndoG-RA 1124 CG8862-RA 81..1013 950..17 4615 99.7 Minus
Tengl2-RA 1018 CG32463-RA 476..576 487..387 250 83.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12177541..12178473 17..950 4590 99.7 Plus
2L 23513712 2L 2238746..2238846 387..487 250 83.2 Plus
Blast to na_te.dros performed on 2015-02-09 01:28:04 has no hits.

BS06483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:25 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8862-PA 1..933 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:10 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8862-PA 1..933 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:53 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 79..1022 8..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:52 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 79..1022 8..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:52 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12177532..12178474 8..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:53 Download gff for BS06483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8065037..8065979 8..952 99   Plus

BS06483.5prime Sequence

935 bp (848 high quality bases) assembled on 2005-12-03

> BS06483.5prime
GAAGTTATCAGTCGACATGAGTGCTCCTCGAGTGGGTGGCGTATTAGCTT
TGGGTGCCACCGCCCTGGGCGCCTTTTATCTGGGCACCCACGTGGAACGC
GAACGCCAGCACAATGGCTCCACAAGTGGCCTTCCGCGGCTGCCTGGTCT
GCCCACCTTTGGAACTGTTTCGGCTGCCAGTTTGATTCCCGCCCAAGAGA
ACAATGTAAGCTTGACGGCAACTCCGTCTCGGATCGGACAGATCATGAAG
TATGGATTTCCCGGACTCGATCACGTGCGCTCCCATTCGGACTACGTGCT
GTCTTACGATCGGAGGAACCGGGTGCCCCACTGGGTGTTCGAGCACCTTA
CGGCAGAGTCGGTGGCGAAGAACGATGCCGTGGACAGATCGAAGTGCGAT
TTCAAGCAGGACGAGAGCATCCATCCGTTCTTCAGGTCACAGAACACGGA
CTACCGACGATCGGGCTATGATCGCGGGCACATGGCCGCCGCTGGAAATC
ACCGACTGCACCAGAAGCACTGCGACGAAACCTTCTACCTATCGAACATG
GCGCCACAGGTGGGCCAGGGCTTCAACCGGGATGCCTGGAACACGCTGGA
GGCACACGTGCGCAGACTGACCAAGACCTACTCCAATGTGTACGTCTGTA
CGGGTCCACTGTACCTACCGCACAAGGAGGACGATGGGAAATCGTATGTC
AAGTACGAGGTCATCGGCGCCAACACCGTGGCTGTTCCCACCCACTTCTA
CAAGGTTATTGTGGGCGAGTCCGCGGACCACAAACTCCACATGGAGTCGT
ACGTGATGCCCAATCANGTGATCAGCAACGACACTCCCATCAGTGTGTTT
CAGGTGCCGCCAGAGAGCGTGAAACGCTCGGCGGGATTGCTCTTCTTCGA
TCAAATCAATCGCAGGCAGCTAACCACCATCAATG

BS06483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8862-PA 933 CG8862-RA 1..919 17..935 4526 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
EndoG-RA 1124 CG8862-RA 81..999 17..935 4554 99.7 Plus
Tengl2-RA 1018 CG32463-RA 476..576 479..579 250 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12177555..12178473 935..17 4554 99.7 Minus
2L 23513712 2L 2238746..2238846 579..479 250 83.2 Minus
Blast to na_te.dros performed on 2015-02-11 14:41:22 has no hits.

BS06483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:26 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8862-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:12 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8862-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:41 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 81..999 17..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:03 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 81..999 17..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:03 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12177555..12178468 22..935 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:41 Download gff for BS06483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8065060..8065973 22..935 99 <- Minus

BS06483.complete Sequence

965 bp (965 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635517

> BS06483.complete
GAAGTTATCAGTCGACATGAGTGCTCCTCGAGTGGGTGGCGTATTAGCTT
TGGGTGCCACCGCCCTGGGCGCCTTTTATCTGGGCACCCACGTGGAACGC
GAACGCCAGCACAATGGCTCCACAAGTGGCCTTCCGCGGCTGCCTGGTCT
GCCCACCTTTGGAACTGTTTCGGCTGCCAGTTTGATTCCCGCCCAAGAGA
ACAATGTAAGCTTGACGGCAACTCCGTCTCGGATCGGACAGATCATGAAG
TATGGATTTCCCGGACTCGATCACGTGCGCTCCCATTCGGACTACGTGCT
GTCTTACGATCGGAGGAACCGGGTGCCCCACTGGGTGTTCGAGCACCTTA
CGGCAGAGTCGGTGGCGAAGAACGATGCCGTGGACAGATCGAAGTGCGAT
TTCAAGCAGGACGAGAGCATCCATCCGTTCTTCAGGTCACAGAACACGGA
CTACCGACGATCGGGCTATGATCGCGGGCACATGGCCGCCGCTGGAAATC
ACCGACTGCACCAGAAGCACTGCGACGAAACCTTCTACCTATCGAACATG
GCGCCACAGGTGGGCCAGGGCTTCAACCGGGATGCCTGGAACACGCTGGA
GGCACACGTGCGCAGACTGACCAAGACCTACTCCAATGTGTACGTCTGTA
CGGGTCCACTGTACCTACCGCACAAGGAGGACGATGGGAAATCGTATGTC
AAGTACGAGGTCATCGGCGCCAACACCGTGGCTGTTCCCACCCACTTCTA
CAAGGTTATTGTGGGCGAGTCCGCGGACCACAAACTCCACATGGAGTCGT
ACGTGATGCCCAATCAGGTGATCAGCAACGACACTCCCATCAGTGTGTTT
CAGGTGCCGCCAGAGAGCGTGGAACGCTCGGCGGGATTGCTCTTCTTCGA
TCAAATCAATCGCAAGCAGCTAACCACCATCAATGGCAAGAAAGTCTAGA
AGCTTTCTAGACCAT

BS06483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
EndoG-RA 933 CG8862-PA 1..933 17..949 4665 100 Plus
Tengl2-RA 957 CG32463-PA 457..557 479..579 250 83.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
EndoG-RA 1124 CG8862-RA 81..1013 17..949 4665 100 Plus
Tengl2-RA 1018 CG32463-RA 476..576 479..579 250 83.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12177541..12178473 949..17 4665 100 Minus
2L 23513712 2L 2238746..2238846 579..479 250 83.2 Minus
Blast to na_te.dros performed on 2014-11-27 01:20:28 has no hits.

BS06483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:48 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG8862-RA 1..933 17..949 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:05 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG8862-RA 58..999 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:28 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 81..1013 17..949 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:48 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG8862-RA 58..999 17..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:32 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
EndoG-RA 81..1013 17..949 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:32 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12177541..12178473 17..949 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:28 Download gff for BS06483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8065046..8065978 17..949 100   Minus

BS06483.pep Sequence

Translation from 16 to 948

> BS06483.pep
MSAPRVGGVLALGATALGAFYLGTHVERERQHNGSTSGLPRLPGLPTFGT
VSAASLIPAQENNVSLTATPSRIGQIMKYGFPGLDHVRSHSDYVLSYDRR
NRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIHPFFRSQNTDYRRSG
YDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEAHVRR
LTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVG
ESADHKLHMESYVMPNQVISNDTPISVFQVPPESVERSAGLLFFDQINRK
QLTTINGKKV*

BS06483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
EndoG-PA 310 CG8862-PA 1..310 1..310 1647 100 Plus
Tengl2-PA 318 CG32463-PA 15..302 8..302 675 47.8 Plus
Tengl4-PA 378 CG4683-PA 133..364 73..302 398 36.1 Plus
Tengl1-PA 319 CG31682-PA 1..280 1..304 260 27.1 Plus
Tengl3-PA 337 CG31679-PA 102..292 67..293 218 28.4 Plus