Clone Sequence Records
BS06483.3prime Sequence
952 bp (823 high quality bases) assembled on 2005-12-03
> BS06483.3prime
ATGGTCTAGAAAGCTTCTAGACTTTCTTGCCATTGATGGTGGTTAGCTGC
TTGCGATTGATTTGATCGAAGAAGAGCAATCCCGCCGAGCGTTCCACGCT
CTCTGGCGGCACCTGAAACACACTGATGGGAGTGTCGTTGCTGATCACCT
GATTGGGCATCACGTACGACTCCATGTGGAGTTTGTGGTCCGCGGACTCG
CCCACAATAACCTTGTAGAAGTGGGTGGGAACAGCCACGGTGTTGGCGCC
GATGACCTCGTACTTGACATACGATTTCCCATCGTCCTCCTTGTGCGGTA
GGTACAGTGGACCCGTACAGACGTACACATTGGAGTAGGTCTTGGTCAGT
CTGCGCACGTGTGCCTCCAGCGTGTTCCAGGCATCCCGGTTGAAGCCCTG
GCCCACCTGTGGCGCCATGTTCGATAGGTAGAAGGTTTCGTCGCAGTGCT
TCTGGTGCAGTCGGTGATTTCCAGCGGCGGCCATGTGCCCGCGATCATAG
CCCGATCGTCGGTAGTCCGTGTTCTGTGACCTGAAGAACGGATGGATGCT
CTCGTCCTGCTTGAAATCGCACTTCGATCTGTCCACGGCATCGTTCTTCG
CCACCGACTCTGCCGTAAGGTGCTCGAACACCCAGTGGGGCACCCGGTTC
CTCCGATCGTAAGACAGCACGTAGTCCGAATGGGAGCGCACGTGATCGAG
TCCGGGAAATCCATACTTCATGATCTGTCCGATCCGAGACGGAGTTGCCG
TCAAGCTTACATTGTTCTCTTGGGCGGGAATCAAACTGGCAGCCGAAACA
GTTCCAAAGGTGGGCAGACCAGGCAGCCGCGGAAGGCCACTTGTGGAGCC
ATTGTGCTGGCGTTCGCGTTCCACGTGGGTGCCCAGATAAAAAGCGCCCA
GGGCGGGTGGCACCCAAAGCTTATACGCCACCCACTCGAGGAGCACTCAT
GT
BS06483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8862-PA | 933 | CG8862-RA | 44..933 | 906..17 | 4425 | 99.8 | Minus |
CG8862-PA | 933 | CG8862-RA | 1..45 | 950..906 | 200 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoG-RA | 1124 | CG8862-RA | 81..1013 | 950..17 | 4615 | 99.7 | Minus |
Tengl2-RA | 1018 | CG32463-RA | 476..576 | 487..387 | 250 | 83.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12177541..12178473 | 17..950 | 4590 | 99.7 | Plus |
2L | 23513712 | 2L | 2238746..2238846 | 387..487 | 250 | 83.2 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:28:04 has no hits.
BS06483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:25 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-PA | 1..933 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:10 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-PA | 1..933 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:53 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 79..1022 | 8..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:52 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 79..1022 | 8..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:52 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12177532..12178474 | 8..952 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:53 Download gff for
BS06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8065037..8065979 | 8..952 | 99 | | Plus |
BS06483.5prime Sequence
935 bp (848 high quality bases) assembled on 2005-12-03
> BS06483.5prime
GAAGTTATCAGTCGACATGAGTGCTCCTCGAGTGGGTGGCGTATTAGCTT
TGGGTGCCACCGCCCTGGGCGCCTTTTATCTGGGCACCCACGTGGAACGC
GAACGCCAGCACAATGGCTCCACAAGTGGCCTTCCGCGGCTGCCTGGTCT
GCCCACCTTTGGAACTGTTTCGGCTGCCAGTTTGATTCCCGCCCAAGAGA
ACAATGTAAGCTTGACGGCAACTCCGTCTCGGATCGGACAGATCATGAAG
TATGGATTTCCCGGACTCGATCACGTGCGCTCCCATTCGGACTACGTGCT
GTCTTACGATCGGAGGAACCGGGTGCCCCACTGGGTGTTCGAGCACCTTA
CGGCAGAGTCGGTGGCGAAGAACGATGCCGTGGACAGATCGAAGTGCGAT
TTCAAGCAGGACGAGAGCATCCATCCGTTCTTCAGGTCACAGAACACGGA
CTACCGACGATCGGGCTATGATCGCGGGCACATGGCCGCCGCTGGAAATC
ACCGACTGCACCAGAAGCACTGCGACGAAACCTTCTACCTATCGAACATG
GCGCCACAGGTGGGCCAGGGCTTCAACCGGGATGCCTGGAACACGCTGGA
GGCACACGTGCGCAGACTGACCAAGACCTACTCCAATGTGTACGTCTGTA
CGGGTCCACTGTACCTACCGCACAAGGAGGACGATGGGAAATCGTATGTC
AAGTACGAGGTCATCGGCGCCAACACCGTGGCTGTTCCCACCCACTTCTA
CAAGGTTATTGTGGGCGAGTCCGCGGACCACAAACTCCACATGGAGTCGT
ACGTGATGCCCAATCANGTGATCAGCAACGACACTCCCATCAGTGTGTTT
CAGGTGCCGCCAGAGAGCGTGAAACGCTCGGCGGGATTGCTCTTCTTCGA
TCAAATCAATCGCAGGCAGCTAACCACCATCAATG
BS06483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8862-PA | 933 | CG8862-RA | 1..919 | 17..935 | 4526 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoG-RA | 1124 | CG8862-RA | 81..999 | 17..935 | 4554 | 99.7 | Plus |
Tengl2-RA | 1018 | CG32463-RA | 476..576 | 479..579 | 250 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12177555..12178473 | 935..17 | 4554 | 99.7 | Minus |
2L | 23513712 | 2L | 2238746..2238846 | 579..479 | 250 | 83.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:41:22 has no hits.
BS06483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:26 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:12 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:41 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 81..999 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:03 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 81..999 | 17..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:03 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12177555..12178468 | 22..935 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:41 Download gff for
BS06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8065060..8065973 | 22..935 | 99 | <- | Minus |
BS06483.complete Sequence
965 bp (965 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635517
> BS06483.complete
GAAGTTATCAGTCGACATGAGTGCTCCTCGAGTGGGTGGCGTATTAGCTT
TGGGTGCCACCGCCCTGGGCGCCTTTTATCTGGGCACCCACGTGGAACGC
GAACGCCAGCACAATGGCTCCACAAGTGGCCTTCCGCGGCTGCCTGGTCT
GCCCACCTTTGGAACTGTTTCGGCTGCCAGTTTGATTCCCGCCCAAGAGA
ACAATGTAAGCTTGACGGCAACTCCGTCTCGGATCGGACAGATCATGAAG
TATGGATTTCCCGGACTCGATCACGTGCGCTCCCATTCGGACTACGTGCT
GTCTTACGATCGGAGGAACCGGGTGCCCCACTGGGTGTTCGAGCACCTTA
CGGCAGAGTCGGTGGCGAAGAACGATGCCGTGGACAGATCGAAGTGCGAT
TTCAAGCAGGACGAGAGCATCCATCCGTTCTTCAGGTCACAGAACACGGA
CTACCGACGATCGGGCTATGATCGCGGGCACATGGCCGCCGCTGGAAATC
ACCGACTGCACCAGAAGCACTGCGACGAAACCTTCTACCTATCGAACATG
GCGCCACAGGTGGGCCAGGGCTTCAACCGGGATGCCTGGAACACGCTGGA
GGCACACGTGCGCAGACTGACCAAGACCTACTCCAATGTGTACGTCTGTA
CGGGTCCACTGTACCTACCGCACAAGGAGGACGATGGGAAATCGTATGTC
AAGTACGAGGTCATCGGCGCCAACACCGTGGCTGTTCCCACCCACTTCTA
CAAGGTTATTGTGGGCGAGTCCGCGGACCACAAACTCCACATGGAGTCGT
ACGTGATGCCCAATCAGGTGATCAGCAACGACACTCCCATCAGTGTGTTT
CAGGTGCCGCCAGAGAGCGTGGAACGCTCGGCGGGATTGCTCTTCTTCGA
TCAAATCAATCGCAAGCAGCTAACCACCATCAATGGCAAGAAAGTCTAGA
AGCTTTCTAGACCAT
BS06483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoG-RA | 933 | CG8862-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Tengl2-RA | 957 | CG32463-PA | 457..557 | 479..579 | 250 | 83.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoG-RA | 1124 | CG8862-RA | 81..1013 | 17..949 | 4665 | 100 | Plus |
Tengl2-RA | 1018 | CG32463-RA | 476..576 | 479..579 | 250 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12177541..12178473 | 949..17 | 4665 | 100 | Minus |
2L | 23513712 | 2L | 2238746..2238846 | 579..479 | 250 | 83.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:20:28 has no hits.
BS06483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:48 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-RA | 1..933 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:05 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-RA | 58..999 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:28 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 81..1013 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:48 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8862-RA | 58..999 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:32 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoG-RA | 81..1013 | 17..949 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:32 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12177541..12178473 | 17..949 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:28 Download gff for
BS06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8065046..8065978 | 17..949 | 100 | | Minus |
BS06483.pep Sequence
Translation from 16 to 948
> BS06483.pep
MSAPRVGGVLALGATALGAFYLGTHVERERQHNGSTSGLPRLPGLPTFGT
VSAASLIPAQENNVSLTATPSRIGQIMKYGFPGLDHVRSHSDYVLSYDRR
NRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIHPFFRSQNTDYRRSG
YDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEAHVRR
LTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVG
ESADHKLHMESYVMPNQVISNDTPISVFQVPPESVERSAGLLFFDQINRK
QLTTINGKKV*
BS06483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoG-PA | 310 | CG8862-PA | 1..310 | 1..310 | 1647 | 100 | Plus |
Tengl2-PA | 318 | CG32463-PA | 15..302 | 8..302 | 675 | 47.8 | Plus |
Tengl4-PA | 378 | CG4683-PA | 133..364 | 73..302 | 398 | 36.1 | Plus |
Tengl1-PA | 319 | CG31682-PA | 1..280 | 1..304 | 260 | 27.1 | Plus |
Tengl3-PA | 337 | CG31679-PA | 102..292 | 67..293 | 218 | 28.4 | Plus |