Clone BS06484 Report

Search the DGRC for BS06484

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptsni-RA
Protein status:BS06484.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06484.3prime Sequence

774 bp (773 high quality bases) assembled on 2005-12-03

> BS06484.3prime
ATGGTCTAGAAAGCTTTTACCAGGCCAGCGGAGTGCCGTCGTAGTTGACA
AAACCGCCGTTCTGTTTCTCGCCCAGCTTGCTGATGGTCTGCACAATTTG
TCCCGTGCTGGTGGGCACGTCCAAGGGGGCACTGGAGCCACCCATGTCGG
TTTTCACCCAGCCAGGATGCAGACTGACGCACATGATGCGTTGCGGATAC
AGATCCACGCTCAACGACTTGGTGGCCGCATTCAAGGCCGACTTAGAGGT
GCGATAGGCGTACATTCCGCCGTCCGTGTTGCCCTGGATGGAGCCAAGGA
TCGAGGACATGTTAATAATGGCGGCACGGCCCACGCCCATCGGCTGGGAT
TCGTTCGCTTTGGCTGCCTTCTTAAGGAGCGGCAGACACGCCTTGGCCAG
CATGATGGGCACAACCGTGTTGGTCTGCAAGGTGTCGAGCAGCTCCTGCG
ATCGAACGGCCGTTATCCTGGCCGATTTGGGCGCTATGCCGGCATTGTTG
AAGAGCACATTGAGGCCTTGGTCCTTGGTCACGCCCTCGATGTCGGCGAC
TAGCTTGTCATAGGCATCGAAATTTCTCAAATCAATCTCAAGTATGTGTA
TGTTCGAGTGGTTCTTGGCTAGATCCTCCAGCTCCTTTGCCTGCTCGCGA
TTCCGGCAGGTGGTAAATAGATGCTGCGGCGGCTGGGGAAGATTGAGCAG
CGCCTTGACCAGGCCCAGACCCAATCCTCGATTGCAGCCGGTTATCAGGA
TGGAGTTCATGTCGACTGATAACT

BS06484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10964-PA 744 sni-RA 1..744 760..17 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1685 762..16 3735 100 Minus
sni-RA 1105 CG10964-RA 283..1029 762..16 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241577..8242144 16..583 2840 100 Plus
X 23542271 X 8242950..8243078 634..762 645 100 Plus
X 23542271 X 8242205..8242258 583..636 270 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:57:56 has no hits.

BS06484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:27 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-PA 1..744 17..760 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:13 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10964-PA 1..744 17..760 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:08:13 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1029 16..762 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:29 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1029 16..762 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:29 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8241577..8242143 16..582 100 <- Plus
X 8242205..8242256 583..634 100 <- Plus
X 8242951..8243078 635..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:08:13 Download gff for BS06484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135610..8136176 16..582 100 <- Plus
arm_X 8136238..8136289 583..634 100 <- Plus
arm_X 8136984..8137111 635..762 100   Plus

BS06484.5prime Sequence

774 bp (773 high quality bases) assembled on 2005-12-03

> BS06484.5prime
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGTAAAAGCTTTCTAGACC

BS06484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10964-PA 744 sni-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1685 15..761 3735 100 Plus
sni-RA 1105 CG10964-RA 283..1029 15..761 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241577..8242144 761..194 2840 100 Minus
X 23542271 X 8242950..8243078 143..15 645 100 Minus
X 23542271 X 8242205..8242258 194..141 270 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:41:12 has no hits.

BS06484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:29 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:14 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10964-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:33 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1029 15..761 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:56 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
sni-RA 283..1029 15..761 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:56 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8241577..8242143 195..761 100 <- Minus
X 8242205..8242256 143..194 100 <- Minus
X 8242951..8243078 15..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:33 Download gff for BS06484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135610..8136176 195..761 100 <- Minus
arm_X 8136238..8136289 143..194 100 <- Minus
arm_X 8136984..8137111 15..142 100   Minus

BS06484.complete Sequence

776 bp (776 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635518

> BS06484.complete
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGTAAAAGCTTTCTAGACCAT

BS06484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 744 CG10964-PB 1..744 17..760 3720 100 Plus
sni-RA 744 CG10964-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RB 1761 CG10964-RB 939..1685 15..761 3735 100 Plus
sni-RA 1105 CG10964-RA 283..1029 15..761 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241577..8242144 761..194 2840 100 Minus
X 23542271 X 8242950..8243078 143..15 645 100 Minus
X 23542271 X 8242205..8242258 194..141 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:08:50 has no hits.

BS06484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:50 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:07 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 227..973 15..761 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:58 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 285..1026 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:50 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 227..973 15..761 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:50 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 285..1026 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:50 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
X 8241580..8242143 195..758 100 <- Minus
X 8242205..8242256 143..194 100 <- Minus
X 8242951..8243076 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:58 Download gff for BS06484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135613..8136176 195..758 100 <- Minus
arm_X 8136238..8136289 143..194 100 <- Minus
arm_X 8136984..8137109 17..142 100   Minus

BS06484.pep Sequence

Translation from 16 to 759

> BS06484.pep
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*

BS06484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
sni-PB 247 CG10964-PB 1..247 1..247 1264 100 Plus
sni-PA 247 CG10964-PA 1..247 1..247 1264 100 Plus
CG7322-PC 242 CG7322-PC 10..188 4..210 166 30.4 Plus
CG7322-PB 242 CG7322-PB 10..188 4..210 166 30.4 Plus
CG7322-PA 242 CG7322-PA 10..188 4..210 166 30.4 Plus