Clone Sequence Records
BS06484.3prime Sequence
774 bp (773 high quality bases) assembled on 2005-12-03
> BS06484.3prime
ATGGTCTAGAAAGCTTTTACCAGGCCAGCGGAGTGCCGTCGTAGTTGACA
AAACCGCCGTTCTGTTTCTCGCCCAGCTTGCTGATGGTCTGCACAATTTG
TCCCGTGCTGGTGGGCACGTCCAAGGGGGCACTGGAGCCACCCATGTCGG
TTTTCACCCAGCCAGGATGCAGACTGACGCACATGATGCGTTGCGGATAC
AGATCCACGCTCAACGACTTGGTGGCCGCATTCAAGGCCGACTTAGAGGT
GCGATAGGCGTACATTCCGCCGTCCGTGTTGCCCTGGATGGAGCCAAGGA
TCGAGGACATGTTAATAATGGCGGCACGGCCCACGCCCATCGGCTGGGAT
TCGTTCGCTTTGGCTGCCTTCTTAAGGAGCGGCAGACACGCCTTGGCCAG
CATGATGGGCACAACCGTGTTGGTCTGCAAGGTGTCGAGCAGCTCCTGCG
ATCGAACGGCCGTTATCCTGGCCGATTTGGGCGCTATGCCGGCATTGTTG
AAGAGCACATTGAGGCCTTGGTCCTTGGTCACGCCCTCGATGTCGGCGAC
TAGCTTGTCATAGGCATCGAAATTTCTCAAATCAATCTCAAGTATGTGTA
TGTTCGAGTGGTTCTTGGCTAGATCCTCCAGCTCCTTTGCCTGCTCGCGA
TTCCGGCAGGTGGTAAATAGATGCTGCGGCGGCTGGGGAAGATTGAGCAG
CGCCTTGACCAGGCCCAGACCCAATCCTCGATTGCAGCCGGTTATCAGGA
TGGAGTTCATGTCGACTGATAACT
BS06484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10964-PA | 744 | sni-RA | 1..744 | 760..17 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1685 | 762..16 | 3735 | 100 | Minus |
sni-RA | 1105 | CG10964-RA | 283..1029 | 762..16 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241577..8242144 | 16..583 | 2840 | 100 | Plus |
X | 23542271 | X | 8242950..8243078 | 634..762 | 645 | 100 | Plus |
X | 23542271 | X | 8242205..8242258 | 583..636 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:57:56 has no hits.
BS06484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:27 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-PA | 1..744 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:13 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10964-PA | 1..744 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:08:13 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1029 | 16..762 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:29 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1029 | 16..762 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:29 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241577..8242143 | 16..582 | 100 | <- | Plus |
X | 8242205..8242256 | 583..634 | 100 | <- | Plus |
X | 8242951..8243078 | 635..762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:08:13 Download gff for
BS06484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135610..8136176 | 16..582 | 100 | <- | Plus |
arm_X | 8136238..8136289 | 583..634 | 100 | <- | Plus |
arm_X | 8136984..8137111 | 635..762 | 100 | | Plus |
BS06484.5prime Sequence
774 bp (773 high quality bases) assembled on 2005-12-03
> BS06484.5prime
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGTAAAAGCTTTCTAGACC
BS06484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10964-PA | 744 | sni-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1685 | 15..761 | 3735 | 100 | Plus |
sni-RA | 1105 | CG10964-RA | 283..1029 | 15..761 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241577..8242144 | 761..194 | 2840 | 100 | Minus |
X | 23542271 | X | 8242950..8243078 | 143..15 | 645 | 100 | Minus |
X | 23542271 | X | 8242205..8242258 | 194..141 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:41:12 has no hits.
BS06484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:29 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:14 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10964-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:33 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1029 | 15..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:56 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 283..1029 | 15..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:56 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241577..8242143 | 195..761 | 100 | <- | Minus |
X | 8242205..8242256 | 143..194 | 100 | <- | Minus |
X | 8242951..8243078 | 15..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:33 Download gff for
BS06484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135610..8136176 | 195..761 | 100 | <- | Minus |
arm_X | 8136238..8136289 | 143..194 | 100 | <- | Minus |
arm_X | 8136984..8137111 | 15..142 | 100 | | Minus |
BS06484.complete Sequence
776 bp (776 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635518
> BS06484.complete
GAAGTTATCAGTCGACATGAACTCCATCCTGATAACCGGCTGCAATCGAG
GATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTTCCCCAGCCGCCG
CAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGCAAAGGAGCTGGA
GGATCTAGCCAAGAACCACTCGAACATACACATACTTGAGATTGATTTGA
GAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATCGAGGGCGTGACC
AAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGGCATAGCGCCCAA
ATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGCTCGACACCTTGC
AGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCGTGTCTGCCGCTC
CTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGATGGGCGTGGGCCG
TGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCATCCAGGGCAACA
CGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCGGCCTTGAATGCG
GCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACGCATCATGTGCGT
CAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTGGCTCCAGTGCCC
CCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAGACCATCAGCAAG
CTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGACGGCACTCCGCT
GGCCTGGTAAAAGCTTTCTAGACCAT
BS06484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 744 | CG10964-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
sni-RA | 744 | CG10964-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-RB | 1761 | CG10964-RB | 939..1685 | 15..761 | 3735 | 100 | Plus |
sni-RA | 1105 | CG10964-RA | 283..1029 | 15..761 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8241577..8242144 | 761..194 | 2840 | 100 | Minus |
X | 23542271 | X | 8242950..8243078 | 143..15 | 645 | 100 | Minus |
X | 23542271 | X | 8242205..8242258 | 194..141 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:50 has no hits.
BS06484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:50 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:07 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 227..973 | 15..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:58 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 285..1026 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:50 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 227..973 | 15..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:50 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sni-RA | 285..1026 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:50 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8241580..8242143 | 195..758 | 100 | <- | Minus |
X | 8242205..8242256 | 143..194 | 100 | <- | Minus |
X | 8242951..8243076 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:58 Download gff for
BS06484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8135613..8136176 | 195..758 | 100 | <- | Minus |
arm_X | 8136238..8136289 | 143..194 | 100 | <- | Minus |
arm_X | 8136984..8137109 | 17..142 | 100 | | Minus |
BS06484.pep Sequence
Translation from 16 to 759
> BS06484.pep
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*
BS06484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sni-PB | 247 | CG10964-PB | 1..247 | 1..247 | 1264 | 100 | Plus |
sni-PA | 247 | CG10964-PA | 1..247 | 1..247 | 1264 | 100 | Plus |
CG7322-PC | 242 | CG7322-PC | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PB | 242 | CG7322-PB | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PA | 242 | CG7322-PA | 10..188 | 4..210 | 166 | 30.4 | Plus |