Clone BS06488 Report

Search the DGRC for BS06488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG6674-RA
Protein status:BS06488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06488.3prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-03

> BS06488.3prime
ATGGTCTAGAAAGCTTCTAATCATCCTGCTCATCCTCCTCCGCCAAGTGG
GACAGTTGTAGTTTTCCCGCTGCACGGCTCTGTTCCGATTTGGTTTTGCA
TTTCTTTGGCTTATGCGGCTTTTGGCCAATTACATACTCAGGCATCACCA
GCTTGGAACCTCTTAACTGCGGCTTATCCAGCTCCACATCATCCACCTCC
TGCTGTTTGAGGCTCTTGAGCTTGCGGCTGAGTTTGCTGGTCCTCTTGAA
CTCGATCTTGCCATCTGTAGGTGGAGATTCGTTATCGACGCCCTCAGCCT
CGCGCTGTGCATCCATTTGTCGCAGGAAGGACAAGGCGGCGGCGGAGTTG
CTCTGTTCGGAAATGTCCACATCAGACAGGGAGTACTTCTTCCATTTGTG
CGGGTTTACCTGGTAATCTGGCGTTTTTCTTGGCTTCAAACAGCGTCCAA
TGGGGAGTTCGGGCTTCTTGAAAATGCTCTCCTTGCCGCGCATTCGTCGC
AGTCTTCCATCCTCCGCATCGAGGCCAGTAACAATGCTGCGACCCTGGCG
GTAGTTCATCACCTGTCCGGATTCGTTTCCGGATTTGTTTCCTCGATCGA
GGGCATTGATGGAAAACGCCTTGGCCTTGCTCTGATCCAAGGCAGTTCCC
CGCAACTCTTTGCTCGCATCGTCGAGACATGCGAAAAGAGCGTCTCGTTT
GGCTGAAAATTCCTGCATGTCGACTGATAACT

BS06488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 702 CG6674-RA 1..702 718..17 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..784 718..17 3510 100 Minus
CG6674-RB 786 CG6674-RB 389..727 355..17 1695 100 Minus
CG6674-RB 786 CG6674-RB 83..391 718..410 1545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971210..9971604 17..411 1975 100 Plus
3L 28110227 3L 9971662..9971972 408..718 1555 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:37:00 has no hits.

BS06488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:36 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:24 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:11 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 11..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:11 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 11..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:11 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9971207..9971602 11..409 99 <- Plus
3L 9971664..9971978 410..725 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:11 Download gff for BS06488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964307..9964702 11..409 99 <- Plus
arm_3L 9964764..9965078 410..725 99   Plus

BS06488.5prime Sequence

732 bp (731 high quality bases) assembled on 2005-12-03

> BS06488.5prime
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATTAGAAGCTTTCTAGACC

BS06488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 702 CG6674-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..784 17..718 3510 100 Plus
CG6674-RB 786 CG6674-RB 389..727 380..718 1695 100 Plus
CG6674-RB 786 CG6674-RB 83..391 17..325 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971210..9971604 718..324 1975 100 Minus
3L 28110227 3L 9971662..9971972 327..17 1555 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:23:34 has no hits.

BS06488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:37 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:25 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:37 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 10..724 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:29 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 77..787 10..724 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:29 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9971207..9971602 326..724 99 <- Minus
3L 9971664..9971978 10..325 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:37 Download gff for BS06488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964307..9964702 326..724 99 <- Minus
arm_3L 9964764..9965078 10..325 99   Minus

BS06488.complete Sequence

734 bp (734 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635519

> BS06488.complete
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATTAGAAGCTTTCTAGACCAT

BS06488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 702 CG6674-PA 1..702 17..718 3510 100 Plus
CG6674-RB 645 CG6674-PB 307..645 380..718 1695 100 Plus
CG6674-RB 645 CG6674-PB 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-RA 843 CG6674-RA 83..784 17..718 3510 100 Plus
CG6674-RB 786 CG6674-RB 389..727 380..718 1695 100 Plus
CG6674-RB 786 CG6674-RB 83..391 17..325 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9971210..9971604 718..324 1975 100 Minus
3L 28110227 3L 9971662..9971972 327..17 1555 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:09:41 has no hits.

BS06488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:51 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:16 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 73..783 10..724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:43 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 83..784 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:51 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 73..783 10..724 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:33 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG6674-RA 83..784 17..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:33 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9971210..9971602 326..718 100 <- Minus
3L 9971664..9971972 17..325 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:43 Download gff for BS06488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9964310..9964702 326..718 100 <- Minus
arm_3L 9964764..9965072 17..325 100   Minus

BS06488.pep Sequence

Translation from 16 to 717

> BS06488.pep
MQEFSAKRDALFACLDDASKELRGTALDQSKAKAFSINALDRGNKSGNES
GQVMNYRQGRSIVTGLDAEDGRLRRMRGKESIFKKPELPIGRCLKPRKTP
DYQVNPHKWKKYSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPP
TDGKIEFKRTSKLSRKLKSLKQQEVDDVELDKPQLRGSKLVMPEYVIGQK
PHKPKKCKTKSEQSRAAGKLQLSHLAEEDEQDD*

BS06488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6674-PA 233 CG6674-PA 1..233 1..233 1192 100 Plus
CG6674-PB 214 CG6674-PB 1..214 1..233 1058 91.8 Plus