Clone Sequence Records
BS06488.3prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-03
> BS06488.3prime
ATGGTCTAGAAAGCTTCTAATCATCCTGCTCATCCTCCTCCGCCAAGTGG
GACAGTTGTAGTTTTCCCGCTGCACGGCTCTGTTCCGATTTGGTTTTGCA
TTTCTTTGGCTTATGCGGCTTTTGGCCAATTACATACTCAGGCATCACCA
GCTTGGAACCTCTTAACTGCGGCTTATCCAGCTCCACATCATCCACCTCC
TGCTGTTTGAGGCTCTTGAGCTTGCGGCTGAGTTTGCTGGTCCTCTTGAA
CTCGATCTTGCCATCTGTAGGTGGAGATTCGTTATCGACGCCCTCAGCCT
CGCGCTGTGCATCCATTTGTCGCAGGAAGGACAAGGCGGCGGCGGAGTTG
CTCTGTTCGGAAATGTCCACATCAGACAGGGAGTACTTCTTCCATTTGTG
CGGGTTTACCTGGTAATCTGGCGTTTTTCTTGGCTTCAAACAGCGTCCAA
TGGGGAGTTCGGGCTTCTTGAAAATGCTCTCCTTGCCGCGCATTCGTCGC
AGTCTTCCATCCTCCGCATCGAGGCCAGTAACAATGCTGCGACCCTGGCG
GTAGTTCATCACCTGTCCGGATTCGTTTCCGGATTTGTTTCCTCGATCGA
GGGCATTGATGGAAAACGCCTTGGCCTTGCTCTGATCCAAGGCAGTTCCC
CGCAACTCTTTGCTCGCATCGTCGAGACATGCGAAAAGAGCGTCTCGTTT
GGCTGAAAATTCCTGCATGTCGACTGATAACT
BS06488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 702 | CG6674-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..784 | 718..17 | 3510 | 100 | Minus |
CG6674-RB | 786 | CG6674-RB | 389..727 | 355..17 | 1695 | 100 | Minus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 718..410 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971210..9971604 | 17..411 | 1975 | 100 | Plus |
3L | 28110227 | 3L | 9971662..9971972 | 408..718 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:37:00 has no hits.
BS06488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:36 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:24 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:11 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 11..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:11 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 11..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:11 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971207..9971602 | 11..409 | 99 | <- | Plus |
3L | 9971664..9971978 | 410..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:11 Download gff for
BS06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964307..9964702 | 11..409 | 99 | <- | Plus |
arm_3L | 9964764..9965078 | 410..725 | 99 | | Plus |
BS06488.5prime Sequence
732 bp (731 high quality bases) assembled on 2005-12-03
> BS06488.5prime
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATTAGAAGCTTTCTAGACC
BS06488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 702 | CG6674-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..784 | 17..718 | 3510 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 389..727 | 380..718 | 1695 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971210..9971604 | 718..324 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 9971662..9971972 | 327..17 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:23:34 has no hits.
BS06488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:37 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:25 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:37 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 10..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:29 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 77..787 | 10..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:29 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971207..9971602 | 326..724 | 99 | <- | Minus |
3L | 9971664..9971978 | 10..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:37 Download gff for
BS06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964307..9964702 | 326..724 | 99 | <- | Minus |
arm_3L | 9964764..9965078 | 10..325 | 99 | | Minus |
BS06488.complete Sequence
734 bp (734 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635519
> BS06488.complete
GAAGTTATCAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTT
TCGCATGTCTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGAT
CAGAGCAAGGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAA
ATCCGGAAACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCA
TTGTTACTGGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGC
AAGGAGAGCATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAA
GCCAAGAAAAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGT
ACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCC
TTGTCCTTCCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGA
TAACGAATCTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCA
AACTCAGCCGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTG
GAGCTGGATAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTA
TGTAATTGGCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGG
AACAGAGCCGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAG
GATGAGCAGGATGATTAGAAGCTTTCTAGACCAT
BS06488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 702 | CG6674-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
CG6674-RB | 645 | CG6674-PB | 307..645 | 380..718 | 1695 | 100 | Plus |
CG6674-RB | 645 | CG6674-PB | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-RA | 843 | CG6674-RA | 83..784 | 17..718 | 3510 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 389..727 | 380..718 | 1695 | 100 | Plus |
CG6674-RB | 786 | CG6674-RB | 83..391 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9971210..9971604 | 718..324 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 9971662..9971972 | 327..17 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:41 has no hits.
BS06488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:51 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:16 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 73..783 | 10..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:43 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 83..784 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:51 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 73..783 | 10..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:33 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6674-RA | 83..784 | 17..718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:33 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9971210..9971602 | 326..718 | 100 | <- | Minus |
3L | 9971664..9971972 | 17..325 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:43 Download gff for
BS06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9964310..9964702 | 326..718 | 100 | <- | Minus |
arm_3L | 9964764..9965072 | 17..325 | 100 | | Minus |
BS06488.pep Sequence
Translation from 16 to 717
> BS06488.pep
MQEFSAKRDALFACLDDASKELRGTALDQSKAKAFSINALDRGNKSGNES
GQVMNYRQGRSIVTGLDAEDGRLRRMRGKESIFKKPELPIGRCLKPRKTP
DYQVNPHKWKKYSLSDVDISEQSNSAAALSFLRQMDAQREAEGVDNESPP
TDGKIEFKRTSKLSRKLKSLKQQEVDDVELDKPQLRGSKLVMPEYVIGQK
PHKPKKCKTKSEQSRAAGKLQLSHLAEEDEQDD*
BS06488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6674-PA | 233 | CG6674-PA | 1..233 | 1..233 | 1192 | 100 | Plus |
CG6674-PB | 214 | CG6674-PB | 1..214 | 1..233 | 1058 | 91.8 | Plus |