Clone Sequence Records
BS06489.3prime Sequence
807 bp (782 high quality bases) assembled on 2005-12-03
> BS06489.3prime
ATGGTCTAGAAAGCTTCTACTGCGAATCGCTGGAACTGGAGCTTGAGCTA
TCCGTGGACATGACCTCCACATCGTCCTGGGCGCGCGTCTCCAGGGCCAC
TGTGTTCCCAGAGGCGCCCATGGTCATGTGCAGCTCTCCGAGATTCCAGT
TAAACTGGTTCTGGAAGGCATTGGGCACCTCGCCGCCGGCGCCACTGCCA
CTCCCACTTCCTGCGCTACCGGACAGCGTTCGCTGCTGCTCCGAGGGCAT
GCCGCTGTTCTGGTGGGTCACTGTTCCGCCGTTGATGTTCTGCTCGGATT
TACCCAGCAGCCCGTTGCGCATCTCAATGTCCGTGGGATAGGGACGCCGC
AGGTCACCTATGCACCAGGTGAGCGGAGCACTGACCGCATTGGCGGAGCT
AATCCGATGTGCGTATTTGATGAGCTCCTCGGATGAAACCGGTCGTTTGT
TGGCCTGATTGATGCTGGCCAGTTTCTGTCGCGCTTGGAAGATGGCCGTG
GACAGTATGAGCTCCGCATCCTTTAGCGACTTTTGCAGCTTCTGGATCTC
ACGGTCGTGCACCTCGACCTTAGCGCGCAGTTGGTCCATCGCCTCCTCCA
CTTTCGCCTGCTCCTCCGCCAGTTCCAGCATTTTGCGAAATTCCTCATCT
TTGGCCACCAGCAAATCCAACAGGTCCACCAATTCGGTGCTGGAGATCTT
CTGGTGCGCCTGCTCGATCAACTCCTTGGCAATCATCTCAATGTCGTCGA
TCAGGAGCAGAAGGCGCTCTTTTGTGCTCAAATGAAACGACATGTCGACT
GATAACT
BS06489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8609-PA | 777 | MED4-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..862 | 793..15 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249608..7250149 | 15..556 | 2710 | 100 | Plus |
3L | 28110227 | 3L | 7250207..7250444 | 556..793 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:52:14 has no hits.
BS06489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:38 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:27 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8609-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:07 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..864 | 11..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:27 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..864 | 11..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:27 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7250208..7250450 | 557..799 | 98 | | Plus |
3L | 7249606..7250149 | 11..556 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:07 Download gff for
BS06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7243308..7243550 | 557..799 | 98 | | Plus |
arm_3L | 7242706..7243249 | 11..556 | 99 | <- | Plus |
BS06489.5prime Sequence
774 bp (602 high quality bases) assembled on 2005-12-03
> BS06489.5prime
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGGATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAAGTCAT
GTCCACNGATAGCTCANGCTCCAG
BS06489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8609-PA | 777 | MED4-RA | 1..758 | 17..774 | 3702 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..841 | 17..774 | 3738 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249629..7250149 | 774..254 | 2553 | 99.2 | Minus |
3L | 28110227 | 3L | 7250207..7250444 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:02:18 has no hits.
BS06489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:39 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-PA | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:28 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8609-PA | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:27 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..841 | 11..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:39 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 78..841 | 11..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:39 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7249629..7250149 | 254..774 | 99 | <- | Minus |
3L | 7250208..7250450 | 11..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:27 Download gff for
BS06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7242729..7243249 | 254..774 | 99 | <- | Minus |
arm_3L | 7243308..7243550 | 11..253 | 98 | | Minus |
BS06489.complete Sequence
809 bp (809 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635520
> BS06489.complete
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGTAGAAGCTTT
CTAGACCAT
BS06489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 777 | CG8609-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-RA | 941 | CG8609-RA | 84..862 | 17..795 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7249608..7250149 | 795..254 | 2710 | 100 | Minus |
3L | 28110227 | 3L | 7250207..7250444 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:21:10 has no hits.
BS06489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:52 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:08 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 74..860 | 11..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:45 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 84..860 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:53 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 74..860 | 11..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:29 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED4-RA | 84..860 | 17..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:29 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7249610..7250149 | 254..793 | 100 | <- | Minus |
3L | 7250208..7250444 | 17..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:45 Download gff for
BS06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7243308..7243544 | 17..253 | 100 | | Minus |
arm_3L | 7242710..7243249 | 254..793 | 100 | <- | Minus |
BS06489.pep Sequence
Translation from 16 to 792
> BS06489.pep
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQ*
BS06489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED4-PA | 258 | CG8609-PA | 1..258 | 1..258 | 1281 | 100 | Plus |