Clone BS06489 Report

Search the DGRC for BS06489

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptMED4-RA
Protein status:BS06489.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06489.3prime Sequence

807 bp (782 high quality bases) assembled on 2005-12-03

> BS06489.3prime
ATGGTCTAGAAAGCTTCTACTGCGAATCGCTGGAACTGGAGCTTGAGCTA
TCCGTGGACATGACCTCCACATCGTCCTGGGCGCGCGTCTCCAGGGCCAC
TGTGTTCCCAGAGGCGCCCATGGTCATGTGCAGCTCTCCGAGATTCCAGT
TAAACTGGTTCTGGAAGGCATTGGGCACCTCGCCGCCGGCGCCACTGCCA
CTCCCACTTCCTGCGCTACCGGACAGCGTTCGCTGCTGCTCCGAGGGCAT
GCCGCTGTTCTGGTGGGTCACTGTTCCGCCGTTGATGTTCTGCTCGGATT
TACCCAGCAGCCCGTTGCGCATCTCAATGTCCGTGGGATAGGGACGCCGC
AGGTCACCTATGCACCAGGTGAGCGGAGCACTGACCGCATTGGCGGAGCT
AATCCGATGTGCGTATTTGATGAGCTCCTCGGATGAAACCGGTCGTTTGT
TGGCCTGATTGATGCTGGCCAGTTTCTGTCGCGCTTGGAAGATGGCCGTG
GACAGTATGAGCTCCGCATCCTTTAGCGACTTTTGCAGCTTCTGGATCTC
ACGGTCGTGCACCTCGACCTTAGCGCGCAGTTGGTCCATCGCCTCCTCCA
CTTTCGCCTGCTCCTCCGCCAGTTCCAGCATTTTGCGAAATTCCTCATCT
TTGGCCACCAGCAAATCCAACAGGTCCACCAATTCGGTGCTGGAGATCTT
CTGGTGCGCCTGCTCGATCAACTCCTTGGCAATCATCTCAATGTCGTCGA
TCAGGAGCAGAAGGCGCTCTTTTGTGCTCAAATGAAACGACATGTCGACT
GATAACT

BS06489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8609-PA 777 MED4-RA 1..777 793..17 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..862 793..15 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249608..7250149 15..556 2710 100 Plus
3L 28110227 3L 7250207..7250444 556..793 1190 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:52:14 has no hits.

BS06489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:38 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:27 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8609-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:07 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..864 11..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:27 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..864 11..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:27 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7250208..7250450 557..799 98   Plus
3L 7249606..7250149 11..556 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:07 Download gff for BS06489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7243308..7243550 557..799 98   Plus
arm_3L 7242706..7243249 11..556 99 <- Plus

BS06489.5prime Sequence

774 bp (602 high quality bases) assembled on 2005-12-03

> BS06489.5prime
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGGATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAAGTCAT
GTCCACNGATAGCTCANGCTCCAG

BS06489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8609-PA 777 MED4-RA 1..758 17..774 3702 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..841 17..774 3738 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249629..7250149 774..254 2553 99.2 Minus
3L 28110227 3L 7250207..7250444 254..17 1190 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:02:18 has no hits.

BS06489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:39 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-PA 1..758 17..774 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:28 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8609-PA 1..758 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:27 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..841 11..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:39 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 78..841 11..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:39 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7249629..7250149 254..774 99 <- Minus
3L 7250208..7250450 11..253 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:27 Download gff for BS06489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7242729..7243249 254..774 99 <- Minus
arm_3L 7243308..7243550 11..253 98   Minus

BS06489.complete Sequence

809 bp (809 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635520

> BS06489.complete
GAAGTTATCAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTC
TGCTCCTGATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAG
GCGCACCAGAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCT
GGTGGCCAAAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGC
AGGCGAAAGTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTG
CACGACCGTGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCT
CATACTGTCCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCA
ATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCA
CATCGGATTAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCAT
AGGTGACCTGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGC
TGCTGGGTAAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAG
AACAGCGGCATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGG
AAGTGGGAGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGA
ACCAGTTTAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCT
GGGAACACAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCAT
GTCCACGGATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGTAGAAGCTTT
CTAGACCAT

BS06489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 777 CG8609-PA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-RA 941 CG8609-RA 84..862 17..795 3895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7249608..7250149 795..254 2710 100 Minus
3L 28110227 3L 7250207..7250444 254..17 1190 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:21:10 has no hits.

BS06489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:52 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:08 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 74..860 11..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:45 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 84..860 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:53 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 74..860 11..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:29 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
MED4-RA 84..860 17..793 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:29 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7249610..7250149 254..793 100 <- Minus
3L 7250208..7250444 17..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:45 Download gff for BS06489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7243308..7243544 17..253 100   Minus
arm_3L 7242710..7243249 254..793 100 <- Minus

BS06489.pep Sequence

Translation from 16 to 792

> BS06489.pep
MSFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDE
EFRKMLELAEEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTA
IFQARQKLASINQANKRPVSSEELIKYAHRISSANAVSAPLTWCIGDLRR
PYPTDIEMRNGLLGKSEQNINGGTVTHQNSGMPSEQQRTLSGSAGSGSGS
GAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALETRAQDDVEVMSTDSS
SSSSSDSQ*

BS06489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
MED4-PA 258 CG8609-PA 1..258 1..258 1281 100 Plus