Clone Sequence Records
BS06490.3prime Sequence
855 bp (854 high quality bases) assembled on 2005-12-03
> BS06490.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCGGTTTCGCTTTTGTGTCTTCATCA
TCGCCCTCGGTCTCCGTCTCGCTACTACTACTACTACTGCTGGTGGGATA
GAAGTCGCGAAGATCCCTAGGCTTATCCCGCTCCTGCTGTTCCTTCTCCA
GGTACTCATTCTGCACCTTAACAATCTCATCGCTGCTCTTGCAGGCTGCA
TAGGCATTGAGAAGCTTGTCGTTTAGCTCCAGAAAGGCATGACCCCATGA
GAACTTGCCCAGAAACCAGCGAGCCTCTTCCGTGAATCCACAGATGTATA
GAGTGGCGGCTATGGCCTCCACGCAGCTGAGCTTGCAGGGCTTTCCGTAG
TTGATGGGATTGGCGGCCACCAAGAAGGGCAGCAGTCGCGGATGTGGGCT
GCGCATCCTTCCAAAGGGCGTCTCGTCCAGCTTGGCCCACGAGCAGTCGA
TCACGGCCACGCCCGAAGAGGCCACCACATCGCGATCCAGCGGACTTACA
CACAACTGGCCAACGGGCGAGAGGACAAGGCCAGGAAACTTCTGACCCAG
TCGAAGATTTGAAATGAGTCCTAGGCGTGCCAGTTTCCTGCCCGAACACT
TCTTTGGATCGCAGTGGTTGAGGTCCCACATGGCCACCGCAAACTCCGGC
GGCTGGCCGAGATCATTTTGGGCTCCATCTCCCGAGGATTCCGAGTCGGA
ACTTTCATTTTCGCTGCTACTGCTGCTGGCCAGCTCGTTGGCCTGCTGAG
CAAAGCTGCGGGCACAATTGTGATTCGCTTTGACATTGCGGTAGGGTCCT
CCTCCACCCTTCTTTCCTTTGCCGCGGTTCCGTCCACTCATGTCGACTGA
TAACT
BS06490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 825 | CG4338-RA | 1..825 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..917 | 841..17 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276438 | 841..17 | 4125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:29:30 has no hits.
BS06490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:40 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:29 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:28 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:51 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 17..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:51 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275610..15276438 | 17..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:28 Download gff for
BS06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101332..11102160 | 17..849 | 99 | | Minus |
BS06490.5prime Sequence
855 bp (793 high quality bases) assembled on 2005-12-03
> BS06490.5prime
GAAGTTATCAGTCGACATGAGTGGACGGAACCGCGGCAAAGGAAAGAAGG
GTGGAGGAGGACCCTACCGCAATGTCAAAGCGAATCACAATTGTGCCCGC
AGCTTTGCTCAGCAGGCCAACGAGCTGGCCAGCAGCAGTAGCAGCGAAAA
TGAAAGTTCCGACTCGGAATCCTCGGGAGATGGAGCCCAAAATGATCTCG
GCCAGCCGCCGGAGTTTGCGGTGGCCATGTGGGACCTCAACCACTGCGAT
CCAAAGAAGTGTTCGGGCAGGAAACTGGCACGCCTAGGACTCATTTCAAA
TCTTCGACTGGGTCAGAAGTTTCCTGGCCTTGTCCTCTCGCCCGTTGGCC
AGTTGTGTGTAAGTCCGCTGGATCGCGATGTGGTGGCCTCTTCGGGCGTG
GCCGTGATCGACTGCTCGTGGGCCAAGCTGGACGAGACGCCCTTTGGAAG
GATGCGCAGCCCACATCCGCGACTGCTGCCCTTCTTGGTGGCCGCCAATC
CCATCAACTACGGAAAGCCCTGCAAGCTCAGCTGCGTGGAGGCCATAGCC
GCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCGCTGGTTTCTGGG
CAAGTTCTCATGGGGTCATGCCTTTCTGGAGCTAAACGACAAGCTTCTCA
ATGCCTATGCAGCCTGCAAGAGCAGCGATGAGATTGTTAAGGTGCAGAAT
GAGTACCTGGAGAAGGAACAGCAGGAGCGGGATAAGCCTAGGGATCTTCG
CGACTTCTATCCCACCAGCAGTAGTAGTAGTAGTAGCGAGACGGAGACCG
AGGGCGATGATGAAGACACAAAAGCGAAACCGAAGAACTAAAAGCTTTCT
AGACC
BS06490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 825 | CG4338-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..917 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276438 | 17..841 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:36:35 has no hits.
BS06490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:41 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:30 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:28 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:56:38 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 89..917 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:56:38 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275610..15276438 | 9..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:28 Download gff for
BS06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101332..11102160 | 9..841 | 99 | | Plus |
BS06490.complete Sequence
857 bp (857 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635521
> BS06490.complete
GAAGTTATCAGTCGACATGAGTGGACGGAACCGCGGCAAAGGAAAGAAGG
GTGGAGGAGGACCCTACCGCAATGTCAAAGCGAATCACAATTGTGCCCGC
AGCTTTGCTCAGCAGGCCAACGAGCTGGCCAGCAGCAGTAGCAGCGAAAA
TGAAAGTTCCGACTCGGAATCCTCGGGAGATGGAGCCCAAAATGATCTCG
GCCAGCCGCCGGAGTTTGCGGTGGCCATGTGGGACCTCAACCACTGCGAT
CCAAAGAAGTGTTCGGGCAGGAAACTGGCACGCCTAGGACTCATTTCAAA
TCTTCGACTGGGTCAGAAGTTTCCTGGCCTTGTCCTCTCGCCCGTTGGCC
AGTTGTGTGTAAGTCCGCTGGATCGCGATGTGGTGGCCTCTTCGGGCGTG
GCCGTGATCGACTGCTCGTGGGCCAAGCTGGACGAGACGCCCTTTGGAAG
GATGCGCAGCCCACATCCGCGACTGCTGCCCTTCTTGGTGGCCGCCAATC
CCATCAACTACGGAAAGCCCTGCAAGCTCAGCTGCGTGGAGGCCATAGCC
GCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCGCTGGTTTCTGGG
CAAGTTCTCATGGGGTCATGCCTTTCTGGAGCTAAACGACAAGCTTCTCA
ATGCCTATGCAGCCTGCAAGAGCAGCGATGAGATTGTTAAGGTGCAGAAT
GAGTACCTGGAGAAGGAACAGCAGGAGCGGGATAAGCCTAGGGATCTTCG
CGACTTCTATCCCACCAGCAGTAGTAGTAGTAGTAGCGAGACGGAGACCG
AGGGCGATGATGAAGACACAAAAGCGAAACCGAAGAACTAAAAGCTTTCT
AGACCAT
BS06490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 825 | CG4338-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-RA | 953 | CG4338-RA | 93..917 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15275614..15276438 | 17..841 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:53 has no hits.
BS06490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:54 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:10 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 75..903 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:31 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 93..915 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:54 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 75..903 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:42 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4338-RA | 93..915 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:42 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15275614..15276436 | 17..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:31 Download gff for
BS06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11101336..11102158 | 17..839 | 100 | | Plus |
BS06490.pep Sequence
Translation from 16 to 840
> BS06490.pep
MSGRNRGKGKKGGGGPYRNVKANHNCARSFAQQANELASSSSSENESSDS
ESSGDGAQNDLGQPPEFAVAMWDLNHCDPKKCSGRKLARLGLISNLRLGQ
KFPGLVLSPVGQLCVSPLDRDVVASSGVAVIDCSWAKLDETPFGRMRSPH
PRLLPFLVAANPINYGKPCKLSCVEAIAATLYICGFTEEARWFLGKFSWG
HAFLELNDKLLNAYAACKSSDEIVKVQNEYLEKEQQERDKPRDLRDFYPT
SSSSSSSETETEGDDEDTKAKPKN*
BS06490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4338-PA | 274 | CG4338-PA | 1..274 | 1..274 | 1452 | 100 | Plus |
