Clone BS06492 Report

Search the DGRC for BS06492

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG11911-RA
Protein status:BS06492.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06492.3prime Sequence

864 bp (863 high quality bases) assembled on 2005-12-03

> BS06492.3prime
ATGGTCTAGAAAGCTTTTAGAAGAGCTTGTAGTAGGCACTCTGAATATTG
GTTATCCAATCAATGTAGGCCGACACCTTGGTGTAAATGGAAGGCATGTT
GGCCAGTCCGCAGGGGATGTAGCCCCAGGATACGATGCCAATCAGCTCGG
AGGGGGCGTTTGTGAACTCAACAACCAGGGGGCCGCCGGAGTCACCGTTG
CATGCAGACTTGCTCTGTTGCAGGGAAGAGGAGCAGATGTTGGACTCAGC
GATAGGAGCGCTTTCCGGCAGCTCCTCCTTGCACTCCTCGTAGTTCAAAA
TTTGGGTGGTCACAGTCTGCAGGGTCTTGGCGCCCGAGAAGATGTAGGAC
TTTGGCTGTCCCCAACCGTACAGGTGGGTCTCTCCCTCATGGACTTGTTC
ACGGCTGGGCAAGGTGGCGGGCTGCACCCACTCGTTGAAGATGAAAGACT
CGTTCACGTGCAGCAGGGCAATGTCGTAGGGCCCAACGCCACCGGTGTAC
TTCTCGTGGACGCGGCCAAAGTCAACTTGGCGCTGCTGGGTCAGCTCATC
CACCTCGGCACGGGTGTGGAGTCCGGCAATGATGCTCATGCCTACTGGCT
CGGAAATGCAATGAGCAGCAGTCACAATCCAGTCCTTGTTAATCAAGGTG
CCTCCGCAGATGTGCGAGTGCTTCAAGTAGTTGGTCGCCAGGGAAACAAT
GTACGGGGCGGAGTGGGGTTCTGCCTCCGTGCCGTTGATCACGAAGCCGG
TCGCAAAGCTAGGCACGAGTTTGGCCAGCTTGTCGGAGAGCTTGGCTCCC
TGGGCGGCGGCCACAAGGGCAATAACCAAAGTCACAGTGATCAGTTTCAT
GTCGACTGATAACT

BS06492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-PA 834 CG11911-RA 1..834 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-RA 970 CG11911-RA 28..862 850..16 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 320387..321221 16..850 4175 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:56:46 has no hits.

BS06492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:45 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:34 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:43 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 19..862 16..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:02 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 19..862 16..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:02 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 320387..321230 16..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:43 Download gff for BS06492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 320387..321230 16..860 99   Plus

BS06492.5prime Sequence

864 bp (737 high quality bases) assembled on 2005-12-03

> BS06492.5prime
GAAGTTATCAGTCGACATGAAACTGATCACTGTGACTTTGGTTATTGCCC
TTGTGGCCGCCGCCCAGGGAGCCAAGCTCTCCGACAAGCTGGCCAAACTC
GTGCCTAGCTTTGCGACCGGCTTCGTGATCAACGGCACGGAGGCAGAACC
CCACTCCGCCCCGTACATTGTTTCCCTGGCGACCAACTACTTGAAGCACT
CGCACATCTGCGGAGGCACCTTGATTAACAAGGACTGGATTGTGACTGCT
GCTCATTGCATTTCCGAGCCAGTAGGCATGAGCATCATTGCCGGACTCCA
CACCCGTGCCGAGGTGGATGAGCTGACCCAGCAGCGCCAAGTTGACTTTG
GCCGCGTCCACGAGAAGTACACCGGTGGCGTTGGGCCCTACGACATTGCC
CTGCTGCACGTGAACGAGTCTTTCATCTTCAACGAGTGGGTGCAGCCCGC
CACCTTGCCCAGCCGTGAACAAGTCCATGAGGGAGAGACCCACCTGTACG
GTTGGGGACAGCCAAAGTCCTACATCTTCTCGGGCGCCAAGACCCTGCAG
ACTGTGACCACCCAAATTTTGAACTACGAGGAGTGCAAGGAGGAGCTGCC
GGAAAGCGCTCCTATCGCTGAGTCCAACATCTGCTCCTCTTCCCTGCAAC
AGAGCAAGTCTGCATGCAACGGTGACTCCGGCGGCCCCCTGGTTGTTGAG
TTCACAAACGCCCCCTCCGAGCTGATTGGCATCGTATCCTGGGGCTACAT
CCCCTGCGGACTGGCCAACATGCCTTCCATTTACACCAAGGTGTCGGCCT
ACATTGATTGGATAACCAATATTCAGAGTGCCTACTACAAGCTCTTCTAA
AAGCTTTCTAGACC

BS06492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-PA 834 CG11911-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-RA 970 CG11911-RA 28..862 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 320387..321221 851..17 4175 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:32:14 has no hits.

BS06492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:45 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:35 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:56 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 19..862 7..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:53 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 19..862 7..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:53 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 320387..321230 7..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:56 Download gff for BS06492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 320387..321230 7..851 99   Minus

BS06492.complete Sequence

866 bp (866 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635522

> BS06492.complete
GAAGTTATCAGTCGACATGAAACTGATCACTGTGACTTTGGTTATTGCCC
TTGTGGCCGCCGCCCAGGGAGCCAAGCTCTCCGACAAGCTGGCCAAACTC
GTGCCTAGCTTTGCGACCGGCTTCGTGATCAACGGCACGGAGGCAGAACC
CCACTCCGCCCCGTACATTGTTTCCCTGGCGACCAACTACTTGAAGCACT
CGCACATCTGCGGAGGCACCTTGATTAACAAGGACTGGATTGTGACTGCT
GCTCATTGCATTTCCGAGCCAGTAGGCATGAGCATCATTGCCGGACTCCA
CACCCGTGCCGAGGTGGATGAGCTGACCCAGCAGCGCCAAGTTGACTTTG
GCCGCGTCCACGAGAAGTACACCGGTGGCGTTGGGCCCTACGACATTGCC
CTGCTGCACGTGAACGAGTCTTTCATCTTCAACGAGTGGGTGCAGCCCGC
CACCTTGCCCAGCCGTGAACAAGTCCATGAGGGAGAGACCCACCTGTACG
GTTGGGGACAGCCAAAGTCCTACATCTTCTCGGGCGCCAAGACCCTGCAG
ACTGTGACCACCCAAATTTTGAACTACGAGGAGTGCAAGGAGGAGCTGCC
GGAAAGCGCTCCTATCGCTGAGTCCAACATCTGCTCCTCTTCCCTGCAAC
AGAGCAAGTCTGCATGCAACGGTGACTCCGGCGGCCCCCTGGTTGTTGAG
TTCACAAACGCCCCCTCCGAGCTGATTGGCATCGTATCCTGGGGCTACAT
CCCCTGCGGACTGGCCAACATGCCTTCCATTTACACCAAGGTGTCGGCCT
ACATTGATTGGATAACCAATATTCAGAGTGCCTACTACAAGCTCTTCTAA
AAGCTTTCTAGACCAT

BS06492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-RA 834 CG11911-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-RA 970 CG11911-RA 28..862 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 320387..321221 851..17 4175 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:27:29 has no hits.

BS06492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:55 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:55:12 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 17..860 7..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:43 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 28..859 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:55 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 17..860 7..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:14 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
CG11911-RA 28..859 17..848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:14 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
2L 320390..321221 17..848 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:43 Download gff for BS06492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 320390..321221 17..848 100   Minus

BS06492.pep Sequence

Translation from 16 to 849

> BS06492.pep
MKLITVTLVIALVAAAQGAKLSDKLAKLVPSFATGFVINGTEAEPHSAPY
IVSLATNYLKHSHICGGTLINKDWIVTAAHCISEPVGMSIIAGLHTRAEV
DELTQQRQVDFGRVHEKYTGGVGPYDIALLHVNESFIFNEWVQPATLPSR
EQVHEGETHLYGWGQPKSYIFSGAKTLQTVTTQILNYEECKEELPESAPI
AESNICSSSLQQSKSACNGDSGGPLVVEFTNAPSELIGIVSWGYIPCGLA
NMPSIYTKVSAYIDWITNIQSAYYKLF*

BS06492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11911-PA 277 CG11911-PA 1..277 1..277 1451 100 Plus
CG7142-PA 334 CG7142-PA 85..328 42..271 467 41.6 Plus
CG11912-PA 271 CG11912-PA 23..270 30..272 459 39.9 Plus
CG33127-PA 284 CG33127-PA 35..283 26..276 451 37.8 Plus
Phae1-PB 270 CG16996-PB 34..264 35..267 409 37.2 Plus