Clone BS06494 Report

Search the DGRC for BS06494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG10672-RA
Protein status:BS06494.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06494.3prime Sequence

878 bp (826 high quality bases) assembled on 2005-12-03

> BS06494.3prime
ATGGTCTAGAAAGCTTTTACAAACGAGCTGTCATTCCACCGCCCGCCACA
ATGGACTCTCCGGTAATGTAGCCCGCATCCTCGGAGACCAAAAAGGAGAC
CACGCCAGCCATCTCCTCGCTGGTGCCCAGACGACCCATGGGTATTTTGC
TCAAAGCCGCTTCATTCGCCGACTCATTCTCGTACAGTGCTTTCGAGAAC
TTTGTCCTGATGACTCCTGGAGCCAGGCAGTTGACGCGAATGCCCTCGGG
CGCCAGATCCTTGGCGGCTGCCTTGGTCAAGCCAATCAGCGCGGTCTTGC
TGACGGAATAGGCTCCCAGTAGCTCAAAGGCATCATAGCCAGCAATGGAG
GAGACGAAAACGATGCTGGAGTTCTTTTGCTGGCGCAGGAGAGGCAGTGC
CTCCTTGGCCAGCAGATAGGAACTCTTCACGTTCACATCGAAGATCTTGT
CCCACACCTTCTCGTCGCACTCGAGGACACCGCCGACCGCAGGATTGGTG
GCTGCATTGCTGACCAGAATGTTAAGCTTGCCAAACTTGCTGATGGTCTC
CTCGAAGAGCTGTTTGCGATCCTCGGGTTCGCTGACATGGCACTTCAGAC
CGTGGACATTCAAGTTCAGTTTGCGCAGCTCCGCCAGAGCAGAGTCCACA
TTCTTTTGCTTGCGACTGCTGATGACCACTGCGGCGCCATCTTCGGCCAG
CCTTTTGGCAATCGCGAAACCAATGCCATCGGTGGAGGCGGTGACCACGG
CTACTTTTCCTGCCAAACGCTTCATCGTGCCGGCTGTCGAACTTTGACTA
CTGCTGGACAAGCGTTTGTGGCATTGATTGAGATTAGGGCCAACAAGTTT
TCGGCTGTAATTGTTGCTGTTTTGATCG

BS06494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 954 CG10672-RA 93..954 878..17 4160 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 189..1050 878..17 4220 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 323..726 1960 99 Plus
3L 28110227 3L 5140472..5140779 17..324 1510 99.4 Plus
3L 28110227 3L 5141306..5141458 726..878 765 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:09:47 has no hits.

BS06494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:49 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 93..954 17..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:40 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 93..954 17..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:48:38 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 189..1052 13..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:41 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 189..1052 13..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:41 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5140470..5140777 13..322 98 <- Plus
3L 5140840..5141242 323..725 99 <- Plus
3L 5141306..5141458 726..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:48:38 Download gff for BS06494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133570..5133877 13..322 98 <- Plus
arm_3L 5133940..5134342 323..725 99 <- Plus
arm_3L 5134406..5134558 726..878 100   Plus

BS06494.5prime Sequence

883 bp (847 high quality bases) assembled on 2005-12-03

> BS06494.5prime
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGC

BS06494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 954 CG10672-RA 1..867 17..883 4210 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 97..963 17..883 4260 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 664..261 1960 99 Minus
3L 28110227 3L 5141306..5141550 261..17 1225 100 Minus
3L 28110227 3L 5140559..5140779 883..663 1090 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 14:41:06 has no hits.

BS06494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:50 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:42 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:28 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 97..963 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:53 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 97..963 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:53 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5140559..5140777 665..883 99 <- Minus
3L 5140840..5141242 262..664 99 <- Minus
3L 5141306..5141550 17..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:28 Download gff for BS06494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133659..5133877 665..883 99 <- Minus
arm_3L 5133940..5134342 262..664 99 <- Minus
arm_3L 5134406..5134650 17..261 100   Minus

BS06494.complete Sequence

986 bp (986 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635523

> BS06494.complete
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGT
CTCCGAGGATGCGGGCTACATTACCGGAGAGTCCATTGTGGCGGGCGGTG
GAATGACAGCTCGTTTGTAAAAGCTTTCTAGACCAT

BS06494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 954 CG10672-PA 1..954 17..970 4680 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1082 CG10672-RA 97..1050 17..970 4680 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 664..261 1960 99 Minus
3L 28110227 3L 5140472..5140779 970..663 1510 99.4 Minus
3L 28110227 3L 5141306..5141550 261..17 1225 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:15:41 has no hits.

BS06494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:35 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:52 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 105..1060 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:14 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 102..1048 22..968 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:35 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 105..1060 17..974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:13 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 102..1048 22..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:13 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5140474..5140777 665..968 99 <- Minus
3L 5140840..5141242 262..664 99 <- Minus
3L 5141306..5141545 22..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:14 Download gff for BS06494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133574..5133877 665..968 99 <- Minus
arm_3L 5133940..5134342 262..664 99 <- Minus
arm_3L 5134406..5134645 22..261 100   Minus

BS06494.pep Sequence

Translation from 16 to 969

> BS06494.pep
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARL*

BS06494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 317 CG10672-PA 1..317 1..317 1560 100 Plus
CG31546-PA 264 CG31546-PA 12..257 70..312 329 33.7 Plus
CG3699-PA 251 CG3699-PA 3..244 69..312 328 33.1 Plus
CG3603-PB 249 CG3603-PB 6..248 69..313 311 32.8 Plus
CG3603-PA 249 CG3603-PA 6..248 69..313 311 32.8 Plus