Clone Sequence Records
BS06494.3prime Sequence
878 bp (826 high quality bases) assembled on 2005-12-03
> BS06494.3prime
ATGGTCTAGAAAGCTTTTACAAACGAGCTGTCATTCCACCGCCCGCCACA
ATGGACTCTCCGGTAATGTAGCCCGCATCCTCGGAGACCAAAAAGGAGAC
CACGCCAGCCATCTCCTCGCTGGTGCCCAGACGACCCATGGGTATTTTGC
TCAAAGCCGCTTCATTCGCCGACTCATTCTCGTACAGTGCTTTCGAGAAC
TTTGTCCTGATGACTCCTGGAGCCAGGCAGTTGACGCGAATGCCCTCGGG
CGCCAGATCCTTGGCGGCTGCCTTGGTCAAGCCAATCAGCGCGGTCTTGC
TGACGGAATAGGCTCCCAGTAGCTCAAAGGCATCATAGCCAGCAATGGAG
GAGACGAAAACGATGCTGGAGTTCTTTTGCTGGCGCAGGAGAGGCAGTGC
CTCCTTGGCCAGCAGATAGGAACTCTTCACGTTCACATCGAAGATCTTGT
CCCACACCTTCTCGTCGCACTCGAGGACACCGCCGACCGCAGGATTGGTG
GCTGCATTGCTGACCAGAATGTTAAGCTTGCCAAACTTGCTGATGGTCTC
CTCGAAGAGCTGTTTGCGATCCTCGGGTTCGCTGACATGGCACTTCAGAC
CGTGGACATTCAAGTTCAGTTTGCGCAGCTCCGCCAGAGCAGAGTCCACA
TTCTTTTGCTTGCGACTGCTGATGACCACTGCGGCGCCATCTTCGGCCAG
CCTTTTGGCAATCGCGAAACCAATGCCATCGGTGGAGGCGGTGACCACGG
CTACTTTTCCTGCCAAACGCTTCATCGTGCCGGCTGTCGAACTTTGACTA
CTGCTGGACAAGCGTTTGTGGCATTGATTGAGATTAGGGCCAACAAGTTT
TCGGCTGTAATTGTTGCTGTTTTGATCG
BS06494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 954 | CG10672-RA | 93..954 | 878..17 | 4160 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 189..1050 | 878..17 | 4220 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 323..726 | 1960 | 99 | Plus |
3L | 28110227 | 3L | 5140472..5140779 | 17..324 | 1510 | 99.4 | Plus |
3L | 28110227 | 3L | 5141306..5141458 | 726..878 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:09:47 has no hits.
BS06494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:49 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 93..954 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:40 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 93..954 | 17..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:48:38 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 189..1052 | 13..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:41 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 189..1052 | 13..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:41 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140470..5140777 | 13..322 | 98 | <- | Plus |
3L | 5140840..5141242 | 323..725 | 99 | <- | Plus |
3L | 5141306..5141458 | 726..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:48:38 Download gff for
BS06494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133570..5133877 | 13..322 | 98 | <- | Plus |
arm_3L | 5133940..5134342 | 323..725 | 99 | <- | Plus |
arm_3L | 5134406..5134558 | 726..878 | 100 | | Plus |
BS06494.5prime Sequence
883 bp (847 high quality bases) assembled on 2005-12-03
> BS06494.5prime
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGC
BS06494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 954 | CG10672-RA | 1..867 | 17..883 | 4210 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 97..963 | 17..883 | 4260 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 664..261 | 1960 | 99 | Minus |
3L | 28110227 | 3L | 5141306..5141550 | 261..17 | 1225 | 100 | Minus |
3L | 28110227 | 3L | 5140559..5140779 | 883..663 | 1090 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:41:06 has no hits.
BS06494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:50 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:42 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:45:28 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 97..963 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:53 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 97..963 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:53 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140559..5140777 | 665..883 | 99 | <- | Minus |
3L | 5140840..5141242 | 262..664 | 99 | <- | Minus |
3L | 5141306..5141550 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:45:28 Download gff for
BS06494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133659..5133877 | 665..883 | 99 | <- | Minus |
arm_3L | 5133940..5134342 | 262..664 | 99 | <- | Minus |
arm_3L | 5134406..5134650 | 17..261 | 100 | | Minus |
BS06494.complete Sequence
986 bp (986 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635523
> BS06494.complete
GAAGTTATCAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGG
CGCCCAAGATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGT
TCAAGTTTCGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCC
TAATCTCAATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGA
CAGCCGGCACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCC
TCCACCGATGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGG
CGCCGCAGTGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTC
TGGCGGAGCTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCAT
GTCAGCGAACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAA
GTTTGGCAAGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGG
TCGGCGGTGTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGAT
GTGAACGTGAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCT
GCGCCAGCAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCT
ATGATGCCTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTG
ATTGGCTTGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCG
CGTCAACTGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCAC
TGTACGAGAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATG
GGTCGTCTGGGCACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGT
CTCCGAGGATGCGGGCTACATTACCGGAGAGTCCATTGTGGCGGGCGGTG
GAATGACAGCTCGTTTGTAAAAGCTTTCTAGACCAT
BS06494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 954 | CG10672-PA | 1..954 | 17..970 | 4680 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-RA | 1082 | CG10672-RA | 97..1050 | 17..970 | 4680 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5140840..5141243 | 664..261 | 1960 | 99 | Minus |
3L | 28110227 | 3L | 5140472..5140779 | 970..663 | 1510 | 99.4 | Minus |
3L | 28110227 | 3L | 5141306..5141550 | 261..17 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:15:41 has no hits.
BS06494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:35 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:52 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 105..1060 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:14 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 102..1048 | 22..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:35 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 105..1060 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:13 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10672-RA | 102..1048 | 22..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:13 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5140474..5140777 | 665..968 | 99 | <- | Minus |
3L | 5140840..5141242 | 262..664 | 99 | <- | Minus |
3L | 5141306..5141545 | 22..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:14 Download gff for
BS06494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5133574..5133877 | 665..968 | 99 | <- | Minus |
arm_3L | 5133940..5134342 | 262..664 | 99 | <- | Minus |
arm_3L | 5134406..5134645 | 22..261 | 100 | | Minus |
BS06494.pep Sequence
Translation from 16 to 969
> BS06494.pep
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARL*
BS06494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10672-PA | 317 | CG10672-PA | 1..317 | 1..317 | 1560 | 100 | Plus |
CG31546-PA | 264 | CG31546-PA | 12..257 | 70..312 | 329 | 33.7 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 69..312 | 328 | 33.1 | Plus |
CG3603-PB | 249 | CG3603-PB | 6..248 | 69..313 | 311 | 32.8 | Plus |
CG3603-PA | 249 | CG3603-PA | 6..248 | 69..313 | 311 | 32.8 | Plus |