Clone BS06495 Report

Search the DGRC for BS06495

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG31988-RA
Protein status:BS06495.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06495.3prime Sequence

567 bp (566 high quality bases) assembled on 2005-12-03

> BS06495.3prime
ATGGTCTAGAAAGCTTTTAGCAATTGCAGGCGGGGCACACGGGCTTGTCC
CCGTCGATGGTGAAAGTCTGCGAGGTTATAGGATTCTCGCACTTGTTGCA
CCGGAAGCAATCGCGATGCCACTTCACGTTCATGGCGAGCACCGCTGAGT
CCGTTATAGGCTTCTCGCACTTGGCGCACCTGGCAGCAAAGAGGTCCTCG
TAATCCTTTTTGCAATAGGGCTTGCCGTCGCGCTCATAGAACGTTTGATT
GGCGAGCGGCTTTTTGCAGGCACCGCCGCAGCAAAAGCAATCTTCGTGCC
AGCTCTCCCCCATGGCGCAGATGGTTTTTTCAAGGATCGGCTTCTTGCAG
CCGGCACAGGTGTAGGTGTACCGCTCCACGAAGCACTTGTTGCACACTGG
TTCTCCGCTCTGAACATTGAAGGTGGCATCCAGGATCTGCTCATCGCAGT
GGTGGCACAGGAAGTGCTCCGGGTGCCACGTCTTGCCCAGGGCGGTGATC
ATACGCTTGGTGATGGCCTCCTGGCACTTGTGACACACAATGCTCTCAGT
CATGTCGACTGATAACT

BS06495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PA 537 CG31988-RA 1..537 553..17 2685 100 Minus
CG31624-PA 537 CG31624-RA 1..537 553..17 2435 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..926 553..17 2685 100 Minus
CG31988-RA 1014 CG31988-RA 297..833 553..17 2685 100 Minus
CG31624-RC 979 CG31624-RC 87..623 553..17 2535 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201716..21202252 17..553 2685 100 Plus
2L 23513712 2L 21199401..21199937 17..553 2535 98.1 Plus
2L 23513712 2L 19404347..19404402 446..501 190 89.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:58 has no hits.

BS06495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:51 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..553 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:43 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..553 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:56 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 17..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:13 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 17..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:13 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21201716..21202259 17..560 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:56 Download gff for BS06495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201716..21202259 17..560 99   Plus

BS06495.5prime Sequence

567 bp (566 high quality bases) assembled on 2005-12-03

> BS06495.5prime
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
TAAAAGCTTTCTAGACC

BS06495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PA 537 CG31988-RA 1..537 17..553 2685 100 Plus
CG31624-PA 537 CG31624-RA 1..537 17..553 2435 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..926 17..553 2685 100 Plus
CG31988-RA 1014 CG31988-RA 297..833 17..553 2685 100 Plus
CG31624-RC 979 CG31624-RC 87..623 17..553 2535 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201716..21202252 553..17 2685 100 Minus
2L 23513712 2L 21199401..21199937 553..17 2535 98.1 Minus
2L 23513712 2L 19404347..19404402 124..69 190 89.3 Minus
Blast to na_te.dros performed on 2015-02-12 06:00:47 has no hits.

BS06495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:51 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:44 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:22 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 10..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:15 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 290..833 10..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:15 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21201716..21202259 10..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:22 Download gff for BS06495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201716..21202259 10..553 99   Minus

BS06495.complete Sequence

569 bp (569 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635524

> BS06495.complete
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
TAAAAGCTTTCTAGACCAT

BS06495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 537 CG31988-PB 1..537 17..553 2685 100 Plus
CG31988-RA 537 CG31988-PA 1..537 17..553 2685 100 Plus
CG31624-RC 537 CG31624-PC 1..537 17..553 2535 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..926 17..553 2685 100 Plus
CG31988-RA 1014 CG31988-RA 297..833 17..553 2685 100 Plus
CG31624-RC 979 CG31624-RC 87..623 17..553 2535 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201716..21202252 553..17 2685 100 Minus
2L 23513712 2L 21199401..21199937 553..17 2535 98.1 Minus
2L 23513712 2L 19404347..19404402 124..69 190 89.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:57 has no hits.

BS06495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:27 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:48 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 323..866 10..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:07 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 297..831 17..551 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:27 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 323..866 10..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:21 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 297..831 17..551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:21 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21201718..21202252 17..551 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:07 Download gff for BS06495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201718..21202252 17..551 100   Minus

BS06495.pep Sequence

Translation from 16 to 552

> BS06495.pep
MTESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSG
EPVCNKCFVERYTYTCAGCKKPILEKTICAMGESWHEDCFCCGGACKKPL
ANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITDSAVLAMNVKWHRDCF
RCNKCENPITSQTFTIDGDKPVCPACNC*

BS06495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PB 178 CG31988-PB 1..178 1..178 1037 100 Plus
CG31988-PA 178 CG31988-PA 1..178 1..178 1037 100 Plus
CG31624-PC 178 CG31624-PC 1..178 1..178 1001 96.1 Plus
CG31624-PB 178 CG31624-PB 1..178 1..178 1001 96.1 Plus
CG31624-PA 178 CG31624-PA 1..178 1..178 1001 96.1 Plus