Clone Sequence Records
BS06495.3prime Sequence
567 bp (566 high quality bases) assembled on 2005-12-03
> BS06495.3prime
ATGGTCTAGAAAGCTTTTAGCAATTGCAGGCGGGGCACACGGGCTTGTCC
CCGTCGATGGTGAAAGTCTGCGAGGTTATAGGATTCTCGCACTTGTTGCA
CCGGAAGCAATCGCGATGCCACTTCACGTTCATGGCGAGCACCGCTGAGT
CCGTTATAGGCTTCTCGCACTTGGCGCACCTGGCAGCAAAGAGGTCCTCG
TAATCCTTTTTGCAATAGGGCTTGCCGTCGCGCTCATAGAACGTTTGATT
GGCGAGCGGCTTTTTGCAGGCACCGCCGCAGCAAAAGCAATCTTCGTGCC
AGCTCTCCCCCATGGCGCAGATGGTTTTTTCAAGGATCGGCTTCTTGCAG
CCGGCACAGGTGTAGGTGTACCGCTCCACGAAGCACTTGTTGCACACTGG
TTCTCCGCTCTGAACATTGAAGGTGGCATCCAGGATCTGCTCATCGCAGT
GGTGGCACAGGAAGTGCTCCGGGTGCCACGTCTTGCCCAGGGCGGTGATC
ATACGCTTGGTGATGGCCTCCTGGCACTTGTGACACACAATGCTCTCAGT
CATGTCGACTGATAACT
BS06495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PA | 537 | CG31988-RA | 1..537 | 553..17 | 2685 | 100 | Minus |
CG31624-PA | 537 | CG31624-RA | 1..537 | 553..17 | 2435 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..926 | 553..17 | 2685 | 100 | Minus |
CG31988-RA | 1014 | CG31988-RA | 297..833 | 553..17 | 2685 | 100 | Minus |
CG31624-RC | 979 | CG31624-RC | 87..623 | 553..17 | 2535 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201716..21202252 | 17..553 | 2685 | 100 | Plus |
2L | 23513712 | 2L | 21199401..21199937 | 17..553 | 2535 | 98.1 | Plus |
2L | 23513712 | 2L | 19404347..19404402 | 446..501 | 190 | 89.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:58 has no hits.
BS06495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:51 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:43 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..553 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:43:56 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 17..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:13 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 17..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:13 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201716..21202259 | 17..560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:43:56 Download gff for
BS06495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201716..21202259 | 17..560 | 99 | | Plus |
BS06495.5prime Sequence
567 bp (566 high quality bases) assembled on 2005-12-03
> BS06495.5prime
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
TAAAAGCTTTCTAGACC
BS06495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PA | 537 | CG31988-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG31624-PA | 537 | CG31624-RA | 1..537 | 17..553 | 2435 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..926 | 17..553 | 2685 | 100 | Plus |
CG31988-RA | 1014 | CG31988-RA | 297..833 | 17..553 | 2685 | 100 | Plus |
CG31624-RC | 979 | CG31624-RC | 87..623 | 17..553 | 2535 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201716..21202252 | 553..17 | 2685 | 100 | Minus |
2L | 23513712 | 2L | 21199401..21199937 | 553..17 | 2535 | 98.1 | Minus |
2L | 23513712 | 2L | 19404347..19404402 | 124..69 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:00:47 has no hits.
BS06495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:51 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:44 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:22 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 10..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:15 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 290..833 | 10..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:15 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201716..21202259 | 10..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:22 Download gff for
BS06495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201716..21202259 | 10..553 | 99 | | Minus |
BS06495.complete Sequence
569 bp (569 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635524
> BS06495.complete
GAAGTTATCAGTCGACATGACTGAGAGCATTGTGTGTCACAAGTGCCAGG
AGGCCATCACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCG
GAGCACTTCCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTT
CAATGTTCAGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGT
ACACCTACACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATC
TGCGCCATGGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGC
CTGCAAAAAGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGC
CCTATTGCAAAAAGGATTACGAGGACCTCTTTGCTGCCAGGTGCGCCAAG
TGCGAGAAGCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTG
GCATCGCGATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGC
AGACTTTCACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGC
TAAAAGCTTTCTAGACCAT
BS06495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 537 | CG31988-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
CG31988-RA | 537 | CG31988-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG31624-RC | 537 | CG31624-PC | 1..537 | 17..553 | 2535 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-RB | 1149 | CG31988-RB | 390..926 | 17..553 | 2685 | 100 | Plus |
CG31988-RA | 1014 | CG31988-RA | 297..833 | 17..553 | 2685 | 100 | Plus |
CG31624-RC | 979 | CG31624-RC | 87..623 | 17..553 | 2535 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21201716..21202252 | 553..17 | 2685 | 100 | Minus |
2L | 23513712 | 2L | 21199401..21199937 | 553..17 | 2535 | 98.1 | Minus |
2L | 23513712 | 2L | 19404347..19404402 | 124..69 | 190 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:57 has no hits.
BS06495.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:27 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:48 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 323..866 | 10..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:07 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 297..831 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:27 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 323..866 | 10..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:21 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31988-RA | 297..831 | 17..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:21 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21201718..21202252 | 17..551 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:07 Download gff for
BS06495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21201718..21202252 | 17..551 | 100 | | Minus |
BS06495.pep Sequence
Translation from 16 to 552
> BS06495.pep
MTESIVCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSG
EPVCNKCFVERYTYTCAGCKKPILEKTICAMGESWHEDCFCCGGACKKPL
ANQTFYERDGKPYCKKDYEDLFAARCAKCEKPITDSAVLAMNVKWHRDCF
RCNKCENPITSQTFTIDGDKPVCPACNC*
BS06495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31988-PB | 178 | CG31988-PB | 1..178 | 1..178 | 1037 | 100 | Plus |
CG31988-PA | 178 | CG31988-PA | 1..178 | 1..178 | 1037 | 100 | Plus |
CG31624-PC | 178 | CG31624-PC | 1..178 | 1..178 | 1001 | 96.1 | Plus |
CG31624-PB | 178 | CG31624-PB | 1..178 | 1..178 | 1001 | 96.1 | Plus |
CG31624-PA | 178 | CG31624-PA | 1..178 | 1..178 | 1001 | 96.1 | Plus |