Clone Sequence Records
BS06496.3prime Sequence
819 bp (772 high quality bases) assembled on 2005-12-03
> BS06496.3prime
ATGGTCTAGAAAGCTTTCAGTTGACCTTGCCCTTGGACTTGACCTCTTTC
GGCCGAATGTAGGTCTTTATGTAGAACTTGGTGAACATCAGAAACATGAA
GGCGCTGGCCGAACTTATGACATAGATGACACCCCGCGACGCCGAGCAGT
TTGGCTGGAAATAGGTGTACATGCAGTGCAGGAACATCAGGAGGAACTGC
ACCAGCTGGCCCAGGGTAAGGTACTTCTTCCACCAGAGGCTCTCCTGCAC
ATTCTGGCTCTGCGACGAGGCGTAGTAGTAGCCGTACATGACGATGTGCA
CCAGAACATTGAACATGCAGATCAGGAAGACATGGCCACCAAAACCGTAG
AATCGGATCAGCATGTGCGAGGTGAAGACCATGAAGACGTGATGGAACAC
ATGGAGGAACGTGATCTGGCGCTGCTTCTTGCGCAGCACAAAGAATATGG
TGTCCATCAGGTCGAGCACCTTGTTCAGATGGTACATGTACGACAGTGTC
CTTTCCGTGGACTTTAGCTCATGATCCTGCGGCAGGACTTGCATGCAGCT
CAGGTTGTACGGCTTCTGCACGAATAACAGATGGATGCCCCACACAAAAA
TCACCGAATTGAACAGGACTTGTCCGATGTTGTAGAACTTGAGCACACCT
CGCAGCTGGAGTGCCTCATGCTTGTCCATCAGCTTCCTGCCCAGCTTGAG
CACAAACAATAGATACACCGTGATGATGATCACCGAGGTGCGGATACTGC
CCGCCAGCGGCAGCTGGACAGGATCGGCGAAGGGCTTATCGAACACCTCG
AACATGTCGACTGATAACT
BS06496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 789 | CG16904-RA | 1..789 | 805..17 | 3945 | 100 | Minus |
CG5326-PA | 834 | CG5326-RA | 392..446 | 456..402 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..812 | 805..16 | 3950 | 100 | Minus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 460..389 | 210 | 86.1 | Minus |
CG17821-RA | 1073 | CG17821-RA | 616..713 | 475..378 | 190 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816096..9816670 | 16..590 | 2875 | 100 | Plus |
3R | 32079331 | 3R | 9816741..9816957 | 589..805 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 22533152..22533223 | 389..460 | 210 | 86.1 | Plus |
3R | 32079331 | 3R | 22559793..22559868 | 389..464 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:36:33 has no hits.
BS06496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:53 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:45 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:08 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..819 | 8..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:09 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..819 | 8..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:09 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816089..9816669 | 8..589 | 99 | <- | Plus |
3R | 9816742..9816957 | 590..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:08 Download gff for
BS06496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641811..5642391 | 8..589 | 99 | <- | Plus |
arm_3R | 5642464..5642679 | 590..805 | 100 | | Plus |
BS06496.5prime Sequence
819 bp (778 high quality bases) assembled on 2005-12-03
> BS06496.5prime
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACTGAAAGCTTTCTAGACC
BS06496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 789 | CG16904-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5326-PA | 834 | CG5326-RA | 392..446 | 366..420 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..812 | 17..806 | 3950 | 100 | Plus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 362..433 | 210 | 86.1 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..713 | 347..444 | 190 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816096..9816670 | 806..232 | 2875 | 100 | Minus |
3R | 32079331 | 3R | 9816741..9816957 | 233..17 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 22533152..22533223 | 433..362 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 22559793..22559868 | 433..358 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:00:09 has no hits.
BS06496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:54 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:47 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:20 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..819 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:11 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 23..819 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:11 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816089..9816669 | 233..814 | 99 | <- | Minus |
3R | 9816742..9816957 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:20 Download gff for
BS06496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641811..5642391 | 233..814 | 99 | <- | Minus |
arm_3R | 5642464..5642679 | 17..232 | 100 | | Minus |
BS06496.complete Sequence
821 bp (821 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635525
> BS06496.complete
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACTGAAAGCTTTCTAGACCAT
BS06496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 789 | CG16904-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG5326-RA | 834 | CG5326-PA | 388..459 | 362..433 | 210 | 86.1 | Plus |
CG5278-RA | 888 | CG5278-PA | 369..444 | 358..433 | 185 | 82.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-RA | 980 | CG16904-RA | 23..812 | 17..806 | 3950 | 100 | Plus |
CG5326-RA | 1694 | CG5326-RA | 707..778 | 362..433 | 210 | 86.1 | Plus |
CG5278-RA | 1722 | CG5278-RA | 537..612 | 358..433 | 185 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9816096..9816670 | 806..232 | 2875 | 100 | Minus |
3R | 32079331 | 3R | 9816741..9816957 | 233..17 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 22533152..22533223 | 433..362 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 22559793..22559868 | 433..358 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:47:05 has no hits.
BS06496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:26 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:46 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 31..827 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:13 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 28..810 | 22..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:26 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 31..827 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:31 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16904-RA | 28..810 | 22..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:31 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9816098..9816669 | 233..804 | 100 | <- | Minus |
3R | 9816742..9816952 | 22..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:13 Download gff for
BS06496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5641820..5642391 | 233..804 | 100 | <- | Minus |
arm_3R | 5642464..5642674 | 22..232 | 100 | | Minus |
BS06496.pep Sequence
Translation from 16 to 804
> BS06496.pep
MFEVFDKPFADPVQLPLAGSIRTSVIIITVYLLFVLKLGRKLMDKHEALQ
LRGVLKFYNIGQVLFNSVIFVWGIHLLFVQKPYNLSCMQVLPQDHELKST
ERTLSYMYHLNKVLDLMDTIFFVLRKKQRQITFLHVFHHVFMVFTSHMLI
RFYGFGGHVFLICMFNVLVHIVMYGYYYASSQSQNVQESLWWKKYLTLGQ
LVQFLLMFLHCMYTYFQPNCSASRGVIYVISSASAFMFLMFTKFYIKTYI
RPKEVKSKGKVN*
BS06496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16904-PA | 262 | CG16904-PA | 1..262 | 1..262 | 1375 | 100 | Plus |
CG31141-PA | 253 | CG31141-PA | 1..249 | 1..253 | 701 | 50.6 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..252 | 11..250 | 682 | 54.6 | Plus |
eloF-PA | 257 | CG16905-PA | 6..257 | 11..262 | 670 | 48.4 | Plus |
CG9458-PA | 264 | CG9458-PA | 15..262 | 11..258 | 645 | 46 | Plus |