Clone BS06496 Report

Search the DGRC for BS06496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:64
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG16904-RA
Protein status:BS06496.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06496.3prime Sequence

819 bp (772 high quality bases) assembled on 2005-12-03

> BS06496.3prime
ATGGTCTAGAAAGCTTTCAGTTGACCTTGCCCTTGGACTTGACCTCTTTC
GGCCGAATGTAGGTCTTTATGTAGAACTTGGTGAACATCAGAAACATGAA
GGCGCTGGCCGAACTTATGACATAGATGACACCCCGCGACGCCGAGCAGT
TTGGCTGGAAATAGGTGTACATGCAGTGCAGGAACATCAGGAGGAACTGC
ACCAGCTGGCCCAGGGTAAGGTACTTCTTCCACCAGAGGCTCTCCTGCAC
ATTCTGGCTCTGCGACGAGGCGTAGTAGTAGCCGTACATGACGATGTGCA
CCAGAACATTGAACATGCAGATCAGGAAGACATGGCCACCAAAACCGTAG
AATCGGATCAGCATGTGCGAGGTGAAGACCATGAAGACGTGATGGAACAC
ATGGAGGAACGTGATCTGGCGCTGCTTCTTGCGCAGCACAAAGAATATGG
TGTCCATCAGGTCGAGCACCTTGTTCAGATGGTACATGTACGACAGTGTC
CTTTCCGTGGACTTTAGCTCATGATCCTGCGGCAGGACTTGCATGCAGCT
CAGGTTGTACGGCTTCTGCACGAATAACAGATGGATGCCCCACACAAAAA
TCACCGAATTGAACAGGACTTGTCCGATGTTGTAGAACTTGAGCACACCT
CGCAGCTGGAGTGCCTCATGCTTGTCCATCAGCTTCCTGCCCAGCTTGAG
CACAAACAATAGATACACCGTGATGATGATCACCGAGGTGCGGATACTGC
CCGCCAGCGGCAGCTGGACAGGATCGGCGAAGGGCTTATCGAACACCTCG
AACATGTCGACTGATAACT

BS06496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-PA 789 CG16904-RA 1..789 805..17 3945 100 Minus
CG5326-PA 834 CG5326-RA 392..446 456..402 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-RA 980 CG16904-RA 23..812 805..16 3950 100 Minus
CG5326-RA 1694 CG5326-RA 707..778 460..389 210 86.1 Minus
CG17821-RA 1073 CG17821-RA 616..713 475..378 190 80.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9816096..9816670 16..590 2875 100 Plus
3R 32079331 3R 9816741..9816957 589..805 1085 100 Plus
3R 32079331 3R 22533152..22533223 389..460 210 86.1 Plus
3R 32079331 3R 22559793..22559868 389..464 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-06 12:36:33 has no hits.

BS06496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:53 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:45 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:45:08 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 23..819 8..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:53:09 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 23..819 8..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:53:09 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9816089..9816669 8..589 99 <- Plus
3R 9816742..9816957 590..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:45:08 Download gff for BS06496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5641811..5642391 8..589 99 <- Plus
arm_3R 5642464..5642679 590..805 100   Plus

BS06496.5prime Sequence

819 bp (778 high quality bases) assembled on 2005-12-03

> BS06496.5prime
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACTGAAAGCTTTCTAGACC

BS06496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-PA 789 CG16904-RA 1..789 17..805 3945 100 Plus
CG5326-PA 834 CG5326-RA 392..446 366..420 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-RA 980 CG16904-RA 23..812 17..806 3950 100 Plus
CG5326-RA 1694 CG5326-RA 707..778 362..433 210 86.1 Plus
CG17821-RA 1073 CG17821-RA 616..713 347..444 190 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9816096..9816670 806..232 2875 100 Minus
3R 32079331 3R 9816741..9816957 233..17 1085 100 Minus
3R 32079331 3R 22533152..22533223 433..362 210 86.1 Minus
3R 32079331 3R 22559793..22559868 433..358 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-12 06:00:09 has no hits.

BS06496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:42:54 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:22:47 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:17:20 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 23..819 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:11 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 23..819 17..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:11 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9816089..9816669 233..814 99 <- Minus
3R 9816742..9816957 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:17:20 Download gff for BS06496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5641811..5642391 233..814 99 <- Minus
arm_3R 5642464..5642679 17..232 100   Minus

BS06496.complete Sequence

821 bp (821 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635525

> BS06496.complete
GAAGTTATCAGTCGACATGTTCGAGGTGTTCGATAAGCCCTTCGCCGATC
CTGTCCAGCTGCCGCTGGCGGGCAGTATCCGCACCTCGGTGATCATCATC
ACGGTGTATCTATTGTTTGTGCTCAAGCTGGGCAGGAAGCTGATGGACAA
GCATGAGGCACTCCAGCTGCGAGGTGTGCTCAAGTTCTACAACATCGGAC
AAGTCCTGTTCAATTCGGTGATTTTTGTGTGGGGCATCCATCTGTTATTC
GTGCAGAAGCCGTACAACCTGAGCTGCATGCAAGTCCTGCCGCAGGATCA
TGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACA
AGGTGCTCGACCTGATGGACACCATATTCTTTGTGCTGCGCAAGAAGCAG
CGCCAGATCACGTTCCTCCATGTGTTCCATCACGTCTTCATGGTCTTCAC
CTCGCACATGCTGATCCGATTCTACGGTTTTGGTGGCCATGTCTTCCTGA
TCTGCATGTTCAATGTTCTGGTGCACATCGTCATGTACGGCTACTACTAC
GCCTCGTCGCAGAGCCAGAATGTGCAGGAGAGCCTCTGGTGGAAGAAGTA
CCTTACCCTGGGCCAGCTGGTGCAGTTCCTCCTGATGTTCCTGCACTGCA
TGTACACCTATTTCCAGCCAAACTGCTCGGCGTCGCGGGGTGTCATCTAT
GTCATAAGTTCGGCCAGCGCCTTCATGTTTCTGATGTTCACCAAGTTCTA
CATAAAGACCTACATTCGGCCGAAAGAGGTCAAGTCCAAGGGCAAGGTCA
ACTGAAAGCTTTCTAGACCAT

BS06496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-RA 789 CG16904-PA 1..789 17..805 3945 100 Plus
CG5326-RA 834 CG5326-PA 388..459 362..433 210 86.1 Plus
CG5278-RA 888 CG5278-PA 369..444 358..433 185 82.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-RA 980 CG16904-RA 23..812 17..806 3950 100 Plus
CG5326-RA 1694 CG5326-RA 707..778 362..433 210 86.1 Plus
CG5278-RA 1722 CG5278-RA 537..612 358..433 185 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9816096..9816670 806..232 2875 100 Minus
3R 32079331 3R 9816741..9816957 233..17 1085 100 Minus
3R 32079331 3R 22533152..22533223 433..362 210 86.1 Minus
3R 32079331 3R 22559793..22559868 433..358 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 15:47:05 has no hits.

BS06496.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:26 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:46 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 31..827 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:13 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 28..810 22..804 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:26 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 31..827 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:31 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
CG16904-RA 28..810 22..804 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:31 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9816098..9816669 233..804 100 <- Minus
3R 9816742..9816952 22..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:13 Download gff for BS06496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5641820..5642391 233..804 100 <- Minus
arm_3R 5642464..5642674 22..232 100   Minus

BS06496.pep Sequence

Translation from 16 to 804

> BS06496.pep
MFEVFDKPFADPVQLPLAGSIRTSVIIITVYLLFVLKLGRKLMDKHEALQ
LRGVLKFYNIGQVLFNSVIFVWGIHLLFVQKPYNLSCMQVLPQDHELKST
ERTLSYMYHLNKVLDLMDTIFFVLRKKQRQITFLHVFHHVFMVFTSHMLI
RFYGFGGHVFLICMFNVLVHIVMYGYYYASSQSQNVQESLWWKKYLTLGQ
LVQFLLMFLHCMYTYFQPNCSASRGVIYVISSASAFMFLMFTKFYIKTYI
RPKEVKSKGKVN*

BS06496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG16904-PA 262 CG16904-PA 1..262 1..262 1375 100 Plus
CG31141-PA 253 CG31141-PA 1..249 1..253 701 50.6 Plus
CG8534-PA 265 CG8534-PA 14..252 11..250 682 54.6 Plus
eloF-PA 257 CG16905-PA 6..257 11..262 670 48.4 Plus
CG9458-PA 264 CG9458-PA 15..262 11..258 645 46 Plus